Genetic relationships among Stylosanthes species revealed by RFLP and STS analyses

Genetic relationships between 6 unclassified taxa and 24 known species of the genus Stylosanthes were investigated by RFLP and STS analyses. This allowed the diploid taxa used in this study to be classified into nine basal (genome) groups. Representative species in these groups included ’S. seabrana’/S. hamata (Group A), S. viscosa (Group B), S. humilis (Group C), S. macrocephala/S. bracteata (Group D), S. pilosa (Group E), S. leiocarpa (Group F), S. guianensis (Group G), S. tomentosa (Group H) and S. calcicola (Group I). Polyploid taxa used were grouped into five classes based on their putative genomic structures. These are AABB for S. scabra, S. aff. scabra, S. sericeiceps, S. aff. hamata and S. tuberculata; AACC for S. mexicana, S. subsericea, S. sundaica and S. sp.A; DDEE for S. capitata; AAFF for S. sympodialis; and AABBXX for S. erecta, with XX representing an unknown genome. Of the 6 unclassified taxa, three were diploids and 3 tetraploids. Of the 3 diploids, the genome of S. sp. was markedly distinct from those of all other diploids analysed in this study, with that of S. leiocarpa being the closest. The genome of S. sp.B was similar to that of S. humilis, with an average dissimilarity value of 15% between them. The genome of S. aff. viscosa was very similar to that of S. viscosa. Genetic variation between these 2 taxa was not larger than that within each of the 2 taxa. Of the 3 tetraploids, the genomic structure of S. sp.A was similar to those of S. mexicana, S. sundaica and S. subsericea, and the genomic structures of S. aff. scabra and S. aff. hamata were similar to those of S. scabra and S. sericeiceps. Received: 18 September 1998 / Accepted: 23 March 1999     

A Middle and Late Cambrian age for the Booley Bay Formation,County Wexford,Ireland: New acritarch data and its implications

A well preserved Ediacara-type fauna was recorded for the first time a few years ago from the bases of seven sandstone beds in the type section of the Lower Palaeozoic Booley Bay Formation in County Wexford, Ireland. Four microfossil samples from mudstones interbedded with the sandstones yielded an acritarch microflora considered indicative of a late Late Cambrian age for the Ediacara fauna, thus suggesting extension of its range from the Neoproterozoic to the Late Cambrian, rather than to the Middle Cambrian as had been previously suggested. The current study examines the microfossils in more detail, with 18 samples, all of which were productive. One additional Ediacara bed approximately 100 m above those recorded earlier was also observed. The exceptionally well preserved acritarch assemblages indicate a clear Middle Cambrian age for the Ediacara beds, thus predating the previously suggested upper limit for Ediacara faunas. The uppermost part of the formation, above known occurrences of Ediacara beds, is younger; that is, early Late Cambrian, probably coeval with the Olenus trilobite zone. In addition, the age now proposed for the Booley Bay Formation shows that it is part of the Lower Palaeozoic Ribband Group of southeast Ireland, and not part of the Cahore Group as has recently been suggested by the Irish Geological Survey. Thirty-seven acritarch species (or species groups) are distinguished and illustrated. One new species, Stellechinatum ? mariatheresae Vanguestaine, is established.     

Ediacaran acanthomorphic acritarchs from the Outer Krol Belt,Lesser Himalaya,India: Their significance for global correlation

Large acanthomorphic acritarchs have been previously reported from the Ediacaran successions of the Pachmunda and Krol Hill synclines in the Outer Krol Belt of Lesser Himalaya, India. Thin sections of chert from Krol ‘A’ Formation in Khanog and Rajgarh synclines, Outer Krol Belt, record an equally well developed and diversified assemblage of Ediacaran large acanthomorphic acritarchs. This assemblage contains specimens belonging to seven genera and ten species, identified as: Appendisphaera fragilis, A. grandis, Asterocapsoides sp. A, Asterocapsoides sp. B, Cavaspina acuminata, C. basiconica, Eotylotopalla dactylos, Knollisphaeridium sp., Papillomembrana sp., and Weissiella cf. grandistella. It also contains five unnamed forms, viz. A, B, C, D, and E. The Krol acritarch assemblage shows a close resemblance with the Upper Doushantuo or Tanarium anozos–Tanarium conoideum assemblage of China. However, the absence of biostratigraphically important markers such as Tanarium anozos and T. conoideum from the Krol assemblage, so far, makes it difficult to establish a definite biostratigraphic correlation between the two assemblages. The current observations from this new locality provide additional data for regional and global biostratigraphic correlation, and significantly increase the purview of Ediacaran sequences for global biostratigraphic zonation.     

Discovery of a Charophyte locality and Biostratigraphy of the continental Eocene deposits of Oued Méridja (southwestern Algeria)

The continental deposits of Oued Méridja area (west of Bechar, southwestern Algeria) have been assigned by previous authors to the early Eocene on the basis of lacustrine gastropod fauna (Pseudoceratodes). This study reports new paleontological and biostratigraphic data from the Oued Méridja section. Recent field investigations resulted in the discovery of an important charophyte assemblage, composed of five species belonging to four genera: Maedleriella cristellata, Maedleriella aff. cristellata, Harrisichara aff. leptocera, Peckichara disermas and? Gyrogona sp. This association allows to suggest a late Thanetian to early Ypresian age for this locality.     

Identification of Anion Channels Responsible for Fluoride Resistance in Oral Streptococci

Recently, it has been reported that eriC and crcB are involved in bacterial fluoride resistance. However, the fluoride-resistance mechanism in oral streptococci remains unclear. BLAST studies showed that two types of eriCs (eriC1 and eriC2) and two types of crcBs (crcB1 and crcB2) are present across 18 oral streptococci, which were identified in ≥ 10% of 166 orally healthy subjects with ≥ 0.01% of the mean relative abundance. They were divided into three groups based on the distribution of these four genes: group I, only eriC1; group II, eriC1 and eriC2; and group III, eriC2, crcB1, and crcB2. Group I consisted of Streptococcus mutans, in which one of the two eriC1s predominantly affected fluoride resistance. Group II consisted of eight species, and eriC1 was responsible for fluoride resistance, but eriC2 was not, in Streptococcus anginosus as a representative species. Group III consisted of nine species, and both crcB1 and crcB2 were crucial for fluoride resistance, but eriC2 was not, in Streptococcus sanguinis as a representative species. Based on these results, either EriC1 or CrcBs play a role in fluoride resistance in oral streptococci. Complementation between S. mutans EriC1 and S. sanguinis CrcB1/CrcB2 was confirmed in both S. mutans and S. sanguinis. However, neither transfer of S. sanguinis CrcB1/CrcB2 into wild-type S. mutans nor S. mutans EriC1 into wild-type S. sanguinis increased the fluoride resistance of the wild-type strain. Co-existence of different F⁻ channels (EriC and CrcB) did not cause the additive effect on fluoride resistance in oral Streptococcus species.     

Upper Ordovician microphytoplankton of the Bill's Creek Shale and Stonington Formation,Upper Peninsula of Michigan,U.S.A.: Biostratigraphy and paleogeographic significance

An abundant, diverse, and well-preserved organic-walled microphytoplankton assemblage is described from the Upper Ordovician Bill's Creek Shale and the lower Stonington Formation (Bay de Noc Member) in the Upper Peninsula of Michigan, U.S.A. Based on graptolite and conodont evidence, the Bill's Creek Shale and Stonington Formation are Richmondian (=Ashgill) in age. The assemblage is dominated by acritarchs, which comprise 29 species (including the enigmatic palynomorph Gloeocapsomorpha prisca) assigned to 20 genera. The prasinophyte phycomata are represented by undifferentiated species of Leiosphaeridia and Tasmanites. In addition, chitinozoans are abundant, and scolecodonts and graptolite fragments are common. Paleontologic-palynologic and sedimentologic evidence indicates that the Bill's Creek Shale was deposited in a low-energy, shallow, nearshore marine environment. The overlying Bay de Noc Member of the Stonington Formation also accumulated in a low-energy, normal marine environment, but in a more offshore, somewhat deeper water setting. Both formations experienced minor transgressive and regressive episodes as indicated by fluctuations in the composition of the palynoflora. The combined Bill's Creek/Stonington acritarch assemblage closely resembles those described from the Richmondian-aged Maquoketa Shale (Missouri and Kansas), Sylvan Shale (Oklahoma), and Vauréal Formation (Anticosti Island, Québec, Canada). The overall composition of the acritarch assemblage from these four formations reflects a distinctive, recognizably Laurentian character. Nonetheless, many of the Bill's Creek/Stonington acritarchs have been reported from Upper Ordovician localities elsewhere, providing additional evidence for Late Ordovician cosmopolitanism of the marine microphytoplankton community. Additionally, the restricted stratigraphic range of many of the taxa further enhances their biostratigraphic application, both regionally and globally, and reaffirms the Richmondian (=Ashgill) age of the Bill's Creek Shale and Stonington Formation.     

Cytogenetic analyses of eight species in the genus <Emphasis Type="Italic">Leptodactylus</Emphasis> Fitzinger, 1843 (Amphibia,Anura, Leptodactylidae), including a new diploid number and a karyotype with multiple translocations

Background

The karyotypes of Leptodactylus species usually consist of 22 bi-armed chromosomes, but morphological variations in some chromosomes and even differences in the 2n have been reported. To better understand the mechanisms responsible for these differences, eight species were analysed using classical and molecular cytogenetic techniques, including replication banding with BrdU incorporation.

Results

Distinct chromosome numbers were found: 2n = 22 in Leptodactylus chaquensis, L. labyrinthicus, L. pentadactylus, L. petersii, L. podicipinus, and L. rhodomystax; 2n = 20 in Leptodactylus sp. (aff. podicipinus); and 2n = 24 in L. marmoratus. Among the species with 2n = 22, only three had the same basic karyotype. Leptodactylus pentadactylus presented multiple translocations, L. petersii displayed chromosome morphological discrepancy, and L. podicipinus had four pairs of telocentric chromosomes. Replication banding was crucial for characterising this variability and for explaining the reduced 2n in Leptodactylus sp. (aff. podicipinus). Leptodactylus marmoratus had few chromosomes with a similar banding patterns to the 2n = 22 karyotypes. The majority of the species presented a single NOR-bearing pair, which was confirmed using Ag-impregnation and FISH with an rDNA probe. In general, the NOR-bearing chromosomes corresponded to chromosome 8, but NORs were found on chromosome 3 or 4 in some species. Leptodactylus marmoratus had NORs on chromosome pairs 6 and 8. The data from C-banding, fluorochrome staining, and FISH using the telomeric probe helped in characterising the repetitive sequences. Even though hybridisation did occur on the chromosome ends, telomere-like repetitive sequences outside of the telomere region were identified. Metaphase I cells from L. pentadactylus confirmed its complex karyotype constitution because 12 chromosomes appeared as ring-shaped chain in addition to five bivalents.

Conclusions

Species of Leptodactylus exhibited both major and minor karyotypic differences which were identified by classical and molecular cytogenetic techniques. Replication banding, which is a unique procedure that has been used to obtain longitudinal multiple band patterns in amphibian chromosomes, allowed us to outline the general mechanisms responsible for these karyotype differences. The findings also suggested that L. marmoratus, which was formerly included in the genus Adenomera, may have undergone great chromosomal repatterning.

     

A new Ruscinian site in Europe: Baza-1 (Baza basin,Andalusia, Spain)

The Guadix–Baza depression (southeastern Spain) preserves one of the best continental Plio-Pleistocene records of the European continent. The new site, Baza-1, is the first Ruscinian locality with fauna of large vertebrates known in the basin. During the summer seasons of 2001, 2002, 2015 and 2016, systematic excavations were undertaken in the site over an area of 25 m², which provided > 400 fossil remains of Ruscinian mammals. The faunal assemblage is diverse, comprising 17 genera. Rodentia are represented by Ruscinomys sp., Apocricetus barrierei, Debruijnimys julii, Apodemus gorafensis, Castillomys gracilis, Occitanomys cf. brailloni, Paraethomys meini, Paraethomys aff. abaigari, Stephanomys cordii, Trilophomys cf. castroi and Eliomys aff. intermedius. Large mammals are represented by two proboscideans, Anancus arvernensis and Mammut borsoni, the rhino Stephanorhinus sp. cf. S. jeanvireti, the equid cf. Hipparion sp., two bovids, a large sized Alephis sp. and a small-to-middle sized Bovidae indet. (cf. Antilope sp.), and a middle sized deer, Cervinae indet. This record is completed by the presence of a chelonid, Testudinae indet. Biostratigraphic data from micro and macromammals suggest an age for the assemblage between 4 and 4.5 Ma.     

Early Triassic bivalves from the Feixianguan Formation in Xingyi,Guizhou and the Ximatang Formation in Qiubei,Yunnan (southern China)

Based on newly collected materials from the Lower Triassic Feixianguan Formation of Xiongwu section in Xingyi, Guizhou and the Ximatang Formation of Ximatang section in Qiubei, Yunnan, southern China, nine species belonging to seven genera are described. Two bivalve assemblages are recognized and regionally correlated in South China. The bivalve assemblage from the Feixianguan Formation of Xiongwu exhibits a higher diversity including seven species belonging to seven genera: Claraia griesbachi, Leptochondria virgalensis, Entolium (Entolium) microtis, Towapteria scythicum, Bakevillia exporrecta, Bositra sp., and Unionites? fassaensis. In contrast, the bivalve assemblage from the Ximatang Formation of Ximatang has a much lower diversity, consisting of only two species, i.e., Claraia griesbachi and Claraia radialis. Additionally, C. griesbachi and C. radialis, as the most common species of Claraia in the Early Triassic, are revised.     

Aeronian (Llandovery, Lower Silurian) palynomorphs and graptolites from the Lipeón Formation, Eastern Cordillera, north-west Argentina

The lower levels of the Lipeón Formation, in the Eastern Cordillera, north-west Argentina, yield a marine-dominated palynomorph assemblage, together with graptolites of mid to late mid Llandovery age (Demirastrites convolutus and probably Stimulograptus sedgwickii zones). The palynomorph assemblage is dominated by acritarchs, but also contains algae and terrestrial cryptospores. Crassiangulina variacornuta, considered a potentially good global biostratigraphical marker for the Upper Llandovery is recovered for the first time from the Silurian of Argentina. The occurrence of this species in strata not younger than late Aeronian, and independently dated by graptolites, indicates an early first appearance for Crassiangulina variacornuta, in the Lipeón Formation, below the Aeronian/Telychian boundary. The lower part of the unit corresponds to a quiet marine environment; thus supporting that Crassiangulina variacornuta is a facies-sensitive acritarch.     

Prevalence and Genotype Allocation of Pathogenic Leptospira Species in Small Mammals from Various Habitat Types in Germany

Small mammals serve as most important reservoirs for Leptospira spp., the causative agents of Leptospirosis, which is one of the most neglected and widespread zoonotic diseases worldwide. The knowledge about Leptospira spp. occurring in small mammals from Germany is scarce. Thus, this study’s objectives were to investigate the occurrence of Leptospira spp. and the inherent sequence types in small mammals from three different study sites: a forest in southern Germany (site B1); a National Park in south-eastern Germany (site B2) and a renaturalised area, in eastern Germany (site S) where small mammals were captured. DNA was extracted from kidneys of small mammals and tested for Leptospira spp. by real-time PCR. Positive samples were further analysed by duplex and conventional PCRs. For 14 positive samples, multi locus sequence typing (MLST) was performed. Altogether, 1213 small mammals were captured: 216 at site B1, 456 at site B2 and 541 at site S belonging to following species: Sorex (S.) araneus, S. coronatus, Apodemus (A.) flavicollis, Myodes glareolus, Microtus (Mi.) arvalis, Crocidura russula, Arvicola terrestris, A. agrarius, Mustela nivalis, Talpa europaea, and Mi. agrestis. DNA of Leptospira spp. was detected in 6% of all small mammals. At site B1, 25 small mammals (11.6%), at site B2, 15 small mammals (3.3%) and at site S, 33 small mammals (6.1%) were positive for Leptospira spp. Overall, 54 of the positive samples were further determined as L. kirschneri, nine as L. interrogans and four as L. borgpetersenii while five real-time PCR-positive samples could not be further determined by conventional PCR. MLST results revealed focal occurrence of L. interrogans and L. kirschneri sequence type (ST) 117 while L. kirschneri ST 110 was present in small mammals at all three sites. Further, this study provides evidence for a particular host association of L. borgpetersenii to mice of the genus Apodemus.     

Influence of temperature, light and nutrients on the growth rates of the macroalga Gracilaria domingensis in synthetic seawater using experimental design

In the present study, the daily relative growth rates (DRGR, in percent per day) of the red macroalga Gracilaria domingensis in synthetic seawater was investigated for the combined influence of five factors, i.e., light (L), temperature (T), nitrate (N), phosphate (P), and molybdate (M), using a statistical design method. The ranges of the experimental cultivation conditions were T, 18–26°C; L, 74–162?μmol photons m^?2?s^?1; N, 40–80?μmol?L^?1; P, 8–16?μmol?L^?1; and M, 1–5?nmol?L^?1. The optimal conditions, which resulted in a maximum growth rate of ≥6.4% d^?1 from 7 to 10?days of cultivation, were determined by analysis of variance (ANOVA) multivariate factorial analysis (with a 2⁵ full factorial design) to be L, 74?μmol photons m^?2?s^?1; T, 26°C; N, 80?μmol?L^?1; P, 8?μmol?L^?1; and M, 1?nmol?L^?1. In additional, these growth rate values are close to the growth rate values in natural medium (von Stosch medium), i.e., 6.5–7.0% d^?1. The results analyzed by the ANOVA indicate that the factors N and T are highly significant linear terms, X _L, (α?=?0.05). On the other hand, the only significant quadratic term (X _Q) was that for L. Statistically significant interactions between two different factors were found between T vs. L and N vs. T. Finally, a two-way (linear/quadratic interaction) model provided a quite reasonable correlation between the experimental and predicted DRGR values (R _adjusted ² ?=?0.9540).     

Aubenas-les-Alpes (S-E France). Part III – Last and final part of the mammalian assemblage with some comments on the palaeoenvironment and palaeobiogeography

The study of the new material from Aubenas-les-Alpes makes it possible to add to the faunal list taxa hitherto unknown in this locality (Neurogymnurus cayluxi, Issiodoromys minor, Eomys minor, Pseudocricetodon cf. hausi, Pseudocricetodon aff. philippi). New specimens of the shrew Srinitium marteli increase our knowledge of this rare insectivore. The characteristics of the theridomorph I. minor confirm, as does the whole rodent fauna, the correlation with the MP25 level (Late Rupelian). The assemblage of Aubenas-les-Alpes indicates a rather open and dry environment, in accordance with the Early Oligocene climatic context, but some differences compared to other localities of the same age are also noticed. Finally the mammalian assemblage suggests an ongoing biogeographic differentiation at European scale during the Late Rupelian.     

Oral Microbiota Shift after 12-Week Supplementation with Lactobacillus reuteri DSM 17938 and PTA 5289; A Randomized Control Trial

Background

Lactobacillus spp. potentially contribute to health by modulating bacterial biofilm formation, but their effects on the overall oral microbiota remain unclear.

Methods and Findings

Oral microbiota was characterized via 454-pyrosequencing of the 16S rDNA hypervariable region V3-V4 after 12 weeks of daily Lactobacillus reuteri DSM 17938 and PTA 5289 consumption. Forty-four adults were assigned to a test group (n = 22) that received lactobacilli lozenges (10⁸ CFU of each strain/lozenge) or a control group that received placebo (n = 22). Presence of L. reuteri was confirmed by cultivation and species specific PCR. Tooth biofilm samples from 16 adults before, during, and after exposure were analyzed by pyrosequencing. A total of 1,310,292 sequences were quality filtered. After removing single reads, 257 species or phylotypes were identified at 98.5% identity in the Human Oral Microbiome Database. Firmicutes, Bacteroidetes, Fusobacteria, Proteobacteria, and Actinobacteria were the most abundant phyla. Streptococcus was the most common genus and the S. oralis/S. mitis/S. mitis bv2/S. infantis group comprised the dominant species. The number of observed species was unaffected by L. reuteri exposure. However, subjects who had consumed L. reuteri were clustered in a principal coordinates analysis relative to scattering at baseline, and multivariate modeling of pyrosequencing microbiota, and culture and PCR detected L. reuteri separated baseline from 12-week samples in test subjects. L. reuteri intake correlated with increased S. oralis/S. mitis/S. mitis bv2/S. infantis group and Campylobacter concisus, Granulicatella adiacens, Bergeyella sp. HOT322, Neisseria subflava, and SR1 [G-1] sp. HOT874 detection and reduced S. mutans, S. anginosus, N. mucosa, Fusobacterium periodicum, F. nucleatum ss vincentii, and Prevotella maculosa detection. This effect had disappeared 1 month after exposure was terminated.

Conclusions

L. reuteri consumption did not affect species richness but induced a shift in the oral microbiota composition. The biological relevance of this remains to be elucidated.

Trial Registration

ClinicalTrials.gov NCT02311218     

Molecular phylogeny of the western South Atlantic Sciaenidae based on mitochondrial and nuclear data

Fragments of mitochondrial (COI and rRNA 16S) and nuclear (Tmo-4C4) genes were sequenced to evaluate the phylogenetic relationships among 15 genera of the western South Atlantic Sciaenidae, two freshwater genera and the northwest Pacific Larimichthys crocea.Our results suggest a great diversification for the western Atlantic assemblage; the monophyly of Macrodon, Menticirrhus and Plagioscion genera; the distinctiveness of Bardiella, Stellifer and Ophioscion as belonging to the same clade; the possible existence of two distinct groups in Stellifer; the closer relationship between Lonchurus and Paralonchurus; the non-monophyly of Cynoscion; and the remarkable diversification of Larimus breviceps populations in the Brazilian coast. This is the most comprehensive study evaluating the phylogenetic relationships of the western Atlantic sciaenid and provides a guide for future studies within this family.     

Predicting Species’ Vulnerability in a Massively Perturbed System: The Fishes of Lake Turkana,Kenya

Background and Trophic Diversity Study

Lake Turkana is an understudied desert lake shared by Kenya and Ethiopia. This system is at the precipice of large-scale changes in ecological function due to climate change and economic development along its major inflowing river, the Omo River. To anticipate response by the fish community to these changes, we quantified trophic diversity for seven ecological disparate species (Alestes baremose, Hydrocynus forskalli, Labeo horie, Lates niloticus, Oreochromis niloticus, Synodontis schall, and Tilapia zillii) using stable isotopes. Based on their marked morphological differentiation, we postulated that dietary niches of these species would be similar in size but show little overlap. The degree of trophic diversity varied greatly among the species studied, refuting our hypothesis regarding dietary niche size. Oreochromis niloticus and L. niloticus had the highest trophic diversity and significantly larger dietary niches than T. zillii, A. baremose and H. forskalli. Low overlap among the dietary niches of the seven species, with the exception of the synodontid catfish S. schall, is consistent with our second hypothesis.

Predicting Species’ Vulnerability

Breeding vulnerability was highest among those species with the lowest trophic diversity. We predict that in suffering two strikes against them, A. baremose, H. forskalli, T. zillii, and L. horie will be most affected by the highly altered Lake Turkana ecosystem and that O. niloticus, L. niloticus and S. schall will be least affected. Low vulnerability among O. niloticus and L. niloticus is promising for the future of the lake’s fishery, but the third most important fishery species (L. horie) will be highly vulnerable to impending ecosystem change. T. zillii should be treated as separate from O. niloticus in the fishery given higher sensitivity and a different ecological role. We see potential for expansion of the fishery for S. schall but don’t recommend the development of a fishery for A. baremose and H. forskalli.     

Analysis of human clinical and environmental Leptospira to elucidate the eco-epidemiology of leptospirosis in Yaeyama,subtropical Japan

BackgroundLeptospirosis, a zoonosis caused by species in the spirochete genus Leptospira, is endemic to the Yaeyama region in Okinawa, subtropical Japan. Species of the P1 subclade “virulent” group, within the genus Leptospira, are the main etiological agents of leptospirosis in Okinawa. However, their environmental persistence is poorly understood. This study used a combination of bacterial isolation and environmental DNA (eDNA) metabarcoding methods to understand the eco-epidemiology of leptospirosis in this endemic region.FindingsPolymerase chain reaction (PCR) characterized twelve human clinical L. interrogans isolates belonging to the P1 subclade “virulent” subgroup and 11 environmental soil isolates of the P1subclade “low virulent” subgroup (genetically related to L. kmetyi, n = 1; L. alstonii, n = 4; L. barantonii, n = 6) from the Yaeyama region targeting four virulence-related genes (lipL32, ligA, ligB and lpxD1). Clinical isolates were PCR positive for at least three targeted genes, while all environmental isolates were positive only for lipL32. Analysis of infected renal epithelial cells with selected clinical and environmental strains, revealed the disassembly of cell-cell junctions for the Hebdomadis clinical strain serogroup. Comparison of leptospiral eDNA during winter and summer identified operational taxonomic units corresponding to the species isolated from soil samples (L. kmetyi and L. barantonii) and additional P2 subclade species (L. licerasiae, L. wolffii-related, among others) that were not detected by soil cultivation. Total Leptospira read counts were higher in summer than in winter and the analysis of leptospiral/animal eDNA relationship suggested Rattus spp. as a potential reservoir animal.ConclusionOur study demonstrated high environmental Leptospira diversity in the Yaeyama region, particularly during summer, when most of the leptospirosis cases are reported. In addition, several Leptospira species with pathogenic potential were identified that have not yet been reported in Yaeyama; however, the environmental persistence of P1 subclade species previously isolated from human clinical cases in this region was absent, suggesting the need of further methodology development and surveillance.     

Distribution of recent foraminiferal assemblages near the Ombrone River mouth (Northern Tyrrhenian Sea, Italy)

Benthic foraminiferal assemblages in 127 samples, collected at water depth, ranging between 15 and 184 m on the Southern Tuscany continental shelf off the Ombrone River were analysed. Statistical analyses (Cluster and Principal Component Analysis) performed on the 48 most abundant species (>5%) and sedimentological data led to the identification of three clusters related to the size of grain sediment (sand, silt or clay). Q-mode cluster analysis singled out six groups, corresponding to six distinct foraminiferal assemblages: a typical infralittoral assemblage (15-39 m) on sandy silt, clayey silt or silty clay, dominated by Ammonia and Elphidium species, with Eggerelloides scabrus, Rectuvigerina phlegeri and Valvulineria bradyana; a second assemblage (24-78.5 m) associated with vegetated environments or sandy bottoms (Elphidium crispum, Rosalina bradyi, Asterigerinata mamilla, Neoconorbina terquemi, and Tretomphalus concinnus); a third assemblage recognised between 30 and 90 m water depth and characterised by the dominance of the opportunistic species V. bradyana (related to silty bottoms), with Bulimina marginata, R. phlegeri, Ammonia inflata and Ammonia beccarii as other common taxa; an upper circalittoral assemblage (70-100 m) on silty clays, containing B. marginata, Cassidulina carinata and V. bradyana; a lower circalittoral assemblage (95-177 m) on clayey bottoms, with B. marginata, Textularia bocki and Uvigerina mediterranea; and finally, a second lower circalittoral assemblage (104-184 m) on clayey sediments, dominated by two Uvigerina species (U. mediterranea and Uvigerina peregrina), with Sphaeroidina bulloides and B. marginata. The typical V. bradyana assemblage, characterised by relatively low diversity and high dominance, marks the most eutrophicated area running parallel to the coast. The spatial distribution of assemblages is closely associated with sea-bottom sedimentary environments and bathymetry but it is also probably influenced by the outflow of the Ombrone River. The composition, structure and distribution of V. bradyana assemblage suggest an environmental model, useful for paleogeographic reconstruction in areas characterised by a river mouth and a closed morphological setting typical of a nutrient-trap.     

A new small mammal assemblage from the M013 Terre Rosse fissure filling (Gargano,South-Eastern Italy)

The taxonomic study of the small mammal assemblage from fissure M013, sampled by a team of the University of Torino during the 2005–2009 excavations in the Dell’Erba Quarry (Apricena, Foggia) is presented. The assemblage includes the Echinosoricinae Apulogalerix cf. pusillus and the Crocidosoricinae ?Lartetium cf. dehmi; the Myomiminae species Stertomys simplex and Stertomys lyrifer; a new genus and species of Cricetodontinae and a single specimen of Hattomys cf. nazarii. Muridae include Mikrotia cf. parva, Mikrotia sp. 1 and a new genus and species of Murinae, phylogenetically related to Mikrotia. The occurrence of the new Murinae, the new Cricetodontinae, the two species of glirids and the Crocidosoricinae, as well as the absence of Apodemus and Prolagus, indicates M013 as the oldest Gargano's faunal assemblage known to date, despite the occurrence of Hattomys cf. nazarii, Mikrotia cf. parva and Mikrotia sp. 1, which most probably results from infiltrations from younger fissure fillings. The M013 assemblage is an absolute novelty for the Abruzzo-Apulian Palaeobioprovince, opening new perspectives for the timing and mode of dispersal of the forerunners of the Gargano fauna.     

Biocidal Potential and Chemical Composition of Industrial Essential Oils from Hyssopus officinalis,Lavandula × intermedia var. Super,and Santolina chamaecyparissus

This work presents the biocidal (insecticidal, ixodicidal, nematicidal, and phytotoxic) effects and chemical compositions of three essential oils obtained from the industrial steam distillation (IEOs) of hyssop (Hyssopus officinalis L.), lavandin (Lavandula × intermedia or L. × hybrida var. Super ), and cotton lavender (Santolina chamaecyparissus L.). Their chemical composition analyzed by gas chromatography coupled to mass spectrometry showed 1,8‐cineole (53%) and β‐pinene (16%) as the major components of H. officinalis, linalyl acetate (38%) and linalool (29%) of L. × intermedia; and 1,8‐cineole (10%) and 8‐methylene‐3‐oxatricyclo[5.2.0.0^2,4]nonane (8%) in S. chamaecyparissus. The biocidal tests showed that L. × intermedia IEO was the most active against the insect Spodoptera littoralis and toxic to the tick Hyalomma lusitanicum, IEO of H. officinalis was strongly active against S. littoralis, and finally, S. chamaecyparissus IEO was a strong antifeedant against the aphid Rhopalosiphum padi, toxic to H. lusitanicum and with moderate effects against Leptinotarsa decemlineata, S. littoralis, and Lolium perenne.