Phylogeography and population genetics of the endangered Amazonian manatee, Trichechus inunguis Natterer, 1883 (Mammalia, Sirenia)

We used mitochondrial DNA control region sequences to examine phylogeography and population differentiation of the endangered Amazonian manatee Trichechus inunguis. We observe lack of molecular differentiation among localities and we find weak association between geographical and genetic distances. However, nested clade analysis supports restricted gene flow and/or dispersal with some long-distance dispersal. Although this species has a history of extensive hunting, genetic diversity and effective population sizes are relatively high when compared to the West Indian manatee Trichechus manatus. Patterns of mtDNA haplotype diversity in T. inunguis suggest a genetic disequilibrium most likely explained by demographic expansion resulting from secession of hunting and enforcement of conservation and protective measures. Phylogenetic analysis of T. manatus and T. inunguis haplotypes suggests that T. inunguis is nested within T. manatus, effectively making T. manatus a paraphyletic entity. Paraphyly of T. manatus and recent divergence times of T. inunguis and the three main T. manatus lineages suggest a possible need for a taxonomic re-evaluation of the western Atlantic Trichechus.     

The readaptation of Eocene sirenians to life in water

Eocene sirenians and cetaceans simultaneously and independently evolved similar morphological adaptations to aquatic life. These included increased flexibility in the sacral region, reduction and loss of hind limbs, shortening of the neck, increased skeletal mass, and other modifications. Loss of hind limbs was probably driven by selection for the maintenance of horizontal trim. The advantage of a shorter neck lay in the more anterior position and consequently the greater turning moments of forelimb control surfaces that it made possible.     

Phylogeography of the West Indian manatee (Trichechus manatus): how many populations and how many taxa?

To resolve the population genetic structure and phylogeography of the West Indian manatee ( Trichechus manatus ), mitochondrial (mt) DNA control region sequences were compared among eight locations across the western Atlantic region. Fifteen haplotypes were identified among 86 individuals from Florida, Puerto Rico, the Dominican Republic, Mexico, Colombia, Venezuela, Guyana and Brazil. Despite the manatee's ability to move thousands of kilometres along continental margins, strong population separations between most locations were demonstrated with significant haplotype frequency shifts. These findings are consistent with tagging studies which indicate that stretches of open water and unsuitable coastal habitats constitute substantial barriers to gene flow and colonization. Low levels of genetic diversity within Florida and Brazilian samples might be explained by recent colonization into high latitudes or bottleneck effects. Three distinctive mtDNA lineages were observed in an intraspecific phylogeny of T. manatus , corresponding approximately to: (i) Florida and the West Indies; (ii) the Gulf of Mexico to the Caribbean rivers of South America; and (iii) the northeast Atlantic coast of South America. These lineages, which are not concordant with previous subspecies designations, are separated by sequence divergence estimates of d = 0.04–0.07, approximately the same level of divergence observed between T. manatus and the Amazonian manatee ( T. inunguis , n = 16). Three individuals from Guyana, identified as T. manatus , had mtDNA haplotypes which are affiliated with the endemic Amazon form T. inunguis . The three primary T. manatus lineages and the T. inunguis lineage may represent relatively deep phylogeographic partitions which have been bridged recently due to changes in habitat availability (after the Wisconsin glacial period, 10 000 BP ), natural colonization, and human-mediated transplantation.     

INTERSPECIFIC AND INTRASPECIFIC MORPHOLOGICAL VARIATION IN MANATEES (SIRENIA: TRICHECHUS)

The three living species of Trichechus are clearly defined and well exemplify the degree of variability and taxonomic value of morphological characters in a well-understood mammalian genus. Statistical analysis of the largest sample of manatee skulls yet studied has allowed us to identify small suites of characters that effectively distinguish these species. The two subspecies of T. manatus proposed by Hatt (1934) can likewise be distinguished, and their use as taxonomic categories seems justified. This suggests that the cool winters of the northern Gulf Coast, on the one hand, and the deep water and strong currents of the Straits of Florida, on the other, are effective barriers to gene flow between Florida and Antillean manatees. Alleged taxonomic distinctions within T. senegalensis , however, have no demonstrated basis. No significant sexual dimorphism was detected in skulls of any of the species. Many interspecific differences can be correlated with feeding ecology, but others remain unexplained. Features of tooth crown morphology are among the most constant characters examined, but some osteological characters are equally good. T. manatas and T. senegalensis (which are phenetically the most similar) also seem to share a more recent common ancestor than either does with T. inunguis. However, the three species probably separated from each other at nearly the same time. T. inunguis has since become the most derived species, while T. senegalensis has changed the least.     

Phylogeography, phylogeny and hybridization in trichechid sirenians: implications for manatee conservation

Abstract The three living species of manatees, West Indian (Trichechus manatus), Amazonian (Trichechus inunguis) and West African (Trichechus senegalensis), are distributed across the shallow tropical and subtropical waters of America and the western coast of Africa. We have sequenced the mitochondrial DNA control region in 330 Trichechus to compare their phylogeographic patterns. In T. manatus we observed a marked population structure with the identification of three haplotype clusters showing a distinct spatial distribution. A geographic barrier represented by the continuity of the Lesser Antilles to Trinidad Island, near the mouth of the Orinoco River in Venezuela, appears to have restricted the gene flow historically in T. manatus. However, for T. inunguis we observed a single expanding population cluster, with a high diversity of very closely related haplotypes. A marked geographic population structure is likely present in T. senegalensis with at least two distinct clusters. Phylogenetic analyses with the mtDNA cytochrome b gene suggest a clade of the marine Trichechus species, with T. inunguis as the most basal trichechid. This is in agreement with previous morphological analyses. Mitochondrial DNA, autosomal microsatellites and cytogenetic analyses revealed the presence of hybrids between the T. manatus and T. inunguis species at the mouth of the Amazon River in Brazil, extending to the Guyanas and probably as far as the mouth of the Orinoco River. Future conservation strategies should consider the distinct population structure of manatee species, as well as the historical barriers to gene flow and the likely occurrence of interspecific hybridization.     

TLR4 and TLR8 variability in Amazonian and West Indian manatee species from Brazil

Amazonian (Trichechus inunguis) and West Indian (Trichechus manatus) manatees are aquatic mammals vulnerable to extinction found in the Amazon basin and the coastal western Atlantic. Toll-like receptors (TLR) play a key role in recognizing pathogen-associated molecular patterns using leucine-rich repeats (LRRs). We described the diversity of TLR4 and TLR8 genes in these two species of manatee. Amazonian manatee showed seven SNPs in TLR4 and the eight in TLR8, while West Indian manatee shared four and six of those SNPs, respectively. In our analysis, TLR4 showed one non-conservative amino acid replacement substitution in LRR7 and LRR8, on the other hand, TLR8 was less variable and showed only conserved amino acid substitutions. Selection analysis showed that only one TLR4 site was subjected to positive selection and none in TLR8. TLR4 in manatees did not show any evidence of convergent evolution compared to species of the cetacean lineage. Differences in TLR4 and TLR8 polymorphism may be related to distinct selection by pathogens, population reduction of West Indian manatees, or an expected consequence of population expansion in Amazonian manatees. Future studies combining pathogen association and TLR polymorphism may clarify possible roles of these genes and be used for conservation purposes of manatee species.     

Foods and feeding habits of wild and captive Sirenia

The Sirenia along with the elephants and hyraxes form the Super-Order Paenungulata. They are the only fully aquatic mammalian herbivores and are represented by three species of manatees (Trichechidae), the dugong and the now extinct, Steller's sea cow (Dugongidae). Sirenians are non-ruminant herbivores that have specialized hind-gut fermentation in a large paired caecum at the juncture of the large and small intestines. The stomach is relatively small and is characterized by a unique cardiac gland which contains most of the digestive-enzyme secreting cells. Little is known of the digestive physiology of sirenians. The metabolic rate of the manatee is very low in comparison to other mammals and may even represent the lowest weight-specific metabolic rate for any mammal known. Metabolic rates for Dugong have not yet been determined. Foods and feeding habits of these species are reviewed both qualitatively and quantitatively. Manatees consume approximately 896 of their total body weight in aquatic plants daily, whereas the same value for the dugong is about 14%. Digestibilities of aquatic plants vary from 45 to 70% for manatees and a single in vitro measurement for Dugong was 83% for sea-grass. The chemical composition of various plants consumed by wild and captive sirenians are presented and their value in the nutritional ecoloev of the different species is discussed.     

Erythropoiesis and granulopoiesis in the West Indian manatee, Trichechus manatus (Mammalia: Sirenia)

The West Indian manatee, Trichechus manatus, has amedullary, pachyostotic long bones. Since marrow cavities of the long bones typically are the locations of hemopoiesis in adult mammals, the manatee has evolved an alternative primary site of hemopoiesis. Histological examinations of spleens, livers, kidneys, and vertebral bodies indicate that the last-named location is the main site of erythropoiesis and granulopoiesis in T. manatus. This conclusion is based on the presence in the vertebrae of bone-marrow-containing diagnostic cell types including erythroblasts, megakaryocytes, and myelocytes, which are the precursor cells of erythrocytes, platelets, and granular leukocytes, respectively. No developing lymphocytes were found, so that the location of lymphopoiesis remains unknown.     

MORBILLIVIRUS INFECTION IN MANATEES

The first evidence of exposure of free-ranging Florida manatees ( Trichechus manatees latirostris ) to a morbillivirus is reported. Blood samples were collected from 148 Florida manatees between 1977 and 1994. The sample included manatees that were under rehabilitation (n = 97), free-ranging (n = 40) and fresh necropsy specimens (n = 11). Serum from six animals (4%) neutralized porpoise and dolphin morbilliviruses to a higher titer than any other member of the Morbillivirus genus. Antibodies were not detected in sera from 12 free-ranging Antillean manatees ( T. manatus manatus ) from Guyana sampled in 1992 or from 12 hand-reared Amazonian manatees ( T. inunguis ) sampled in 1984. Immunoprecipitation studies using radio-labelled canine distemper virus protein and serum from Florida manatees showed precipitation of the nucleo-capsid (N) protein. The combination of low antibody titers and absence of clinical disease suggest that the Florida manatee is a dead-end host. Sporadic infection may occur following contact with another species in which infection is enzootic. Morbillivirus could, either by fatal infection or more insidious effects on the immune system or reproduction, pose a problem to this already threatened species.     

Shaping Skeletal Growth by Modular Regulatory Elements in the Bmp5 Gene

Cartilage and bone are formed into a remarkable range of shapes and sizes that underlie many anatomical adaptations to different lifestyles in vertebrates. Although the morphological blueprints for individual cartilage and bony structures must somehow be encoded in the genome, we currently know little about the detailed genomic mechanisms that direct precise growth patterns for particular bones. We have carried out large-scale enhancer surveys to identify the regulatory architecture controlling developmental expression of the mouse Bmp5 gene, which encodes a secreted signaling molecule required for normal morphology of specific skeletal features. Although Bmp5 is expressed in many skeletal precursors, different enhancers control expression in individual bones. Remarkably, we show here that different enhancers also exist for highly restricted spatial subdomains along the surface of individual skeletal structures, including ribs and nasal cartilages. Transgenic, null, and regulatory mutations confirm that these anatomy-specific sequences are sufficient to trigger local changes in skeletal morphology and are required for establishing normal growth rates on separate bone surfaces. Our findings suggest that individual bones are composite structures whose detailed growth patterns are built from many smaller lineage and gene expression domains. Individual enhancers in BMP genes provide a genomic mechanism for controlling precise growth domains in particular cartilages and bones, making it possible to separately regulate skeletal anatomy at highly specific locations in the body.     

Functional significance of bone ballastin in the evolution of buoyancy control strategies by aquatic tetrapods

The primary function of pachyostosis, pachyosteo‐sclerosis, and osteosclerosis may be to act as ballast, not so much (as previously suggested) to neutralise the buoyancy of existing lungs, but to allow enlargement of the lungs. Enlarged lungs cause an animal to lose buoyancy more rapidly with depth. They also provide a larger oxygen store. These features are useful for slow swimmers and shallow divers, such as feeders on benthic plants and invertebrates. Examples are sirenians, primitive sauropterygians ("not‐hosaurs"), placodonts, and the sea otter Enhydra. These last two show convergent evolution of adaptations to feeding on hard‐shelled invertebrate prey in shallow water. Mesosaurids are problematical. Bone ballast uses body mass and volume less efficiently than other buoyancy control strategies. Theoretical analysis predicts that bone ballast should not occur in semiaquatic forms, fast swimmers or deep divers. It does not usually occur in such organisms. Marine iguanas of the Galápagos, desmostylians, and the aquatic sloth Thalassocnus are all littoral feeders and all lack bone ballast as predicted. Plesiosaurs adopted varied strategies: some used bone ballast, and others used gastroliths. Biomechanical considerations lead to the prediction that a new marine tetrapod clade will typically evolve bone ballast as part of its adaptation to life in water. Slow swimmers and grazers on sessile food, like sirenians and placodonts, develop it more strongly, but active predators like ichthyosaurs and cetaceans secondarily lose this character.     

THE LIKELIHOOD OF SPERM COMPETITION IN MANATEES-EXPLAINING AN APPARENT PARADOX

Florida manatees ( Trichechus manatus latirostris ) are promiscuous, with multiple males mating with individual females. This suggests manatees are sperm competitors. Surprisingly, manatee testes are not relatively large. For adult males in non-winter, testicular size is approximately twice what is expected, based on allometry, for "typical" ( i. e. , non-sperm competitor) male mammals of similar size; for these manatees, combined testicular weight represents 0.19% of the body weight ( n = 27 manatees). Testicular weight was generally largest in manatees older than 7 yr in non-winter. Testicular size of some sperm competitors is as much as an order of magnitude (or more) larger than expected in a "typical" species. Perhaps in compensation for the testes not being remarkably large, the seminal vesicles of mature manatees may be larger than the testes. Production of notably large volumes of seminal fluid characterizes sperm competitor primate species and may have positive energy consequences for species such as the manatee that have extremely low metabolic rates. Another possible explanation for the observed relationship between testicular mass and body mass in manatees is that selection for a greatly expanded hindgut and extremely dense, heavy integument could make the body mass of manatees "artificially" high, and the relative testicular mass "artificially" low.     

Manatees as Sentinels of Marine Ecosystem Health: Are They the 2000-pound Canaries?

The order Sirenia is represented by three species of manatees and one species of dugong distributed in tropical and subtropical regions of the world and considered vulnerable to extinction. The sentinel species concept is useful to identify indicators of the environment and may reflect the quality of health in marine ecosystems. The single species approach to evaluate ecological health may provide a series of snap shots of environmental changes to determine if animal, human, or ecosystem health may be affected. Under this concept, marine vertebrates may be good integrators of changes over space and time, and excellent sentinels of ecosystem health. Based on their life history, manatees may or may not be ideal sentinels, as they are robust, long-lived species and appear remarkably resilient to natural disease and the effects of human-related injury and trauma. These characteristics might be the result of an efficient and responsive immune system compared to other marine mammals. Although relatively immune to infectious agents, manatees face other potentially serious threats, including epizootic diseases and pollution while in large aggregations. Manatees can serve as excellent sentinels of harmful algal blooms due to their high sensitivity, specifically to brevetoxicosis, which has caused at least two major die-offs in recent times. Threats to manatees worldwide, such as illegal hunting and boat collisions, are increasing. Habitat is being lost at an alarming rate and the full effects of uncontrolled human population growth on the species are unknown. The manatee may serve as a sentinel species, prognosticating the deleterious effects of unhealthy marine and aquatic ecosystems on humans. We have identified a number of critical research needs and opportunities for transdisciplinary collaboration that could help advance the use of the sentinel species concept in marine ecosystem health and monitoring of disease emergence using our knowledge on these magnificent sirenians.     

Biology, conservation and status of the Amazonian Manatee Trichechus inunguis

The Amazonian Manatee Trichechus inunguis (Natterer, 1883) is the only exclusively freshwater sirenian and the smallest of the living species. Its inability to reduce peripheral heat loss limits its distribution to tropical waters. The species is endemic to the Amazonian region, being distributed throughout the Amazon basin, occurring mainly in calm waters and lakes. The species has been commercially exploited since 1542, with the meat and hide being the main products extracted. This commercial exploitation, combined with their very low reproductive rate, has seriously reduced the manatee population. Therefore the Amazonian Manatee is now considered an endangered species. Although it is protected by most of the countries where it occurs, there is no law enforcement, and the species is still captured throughout the Amazon. Data on general biology, physiology and management of the Amazonian Manatee, as well as its status and recommendations for its conservation, are presented.     

甘肃鸟的新材料及其解剖和行为习性的补充研究

继1984年首次报道甘肃玉门昌马发现的早白垩世甘肃鸟及2006年记述多件甘肃鸟标本以来,再次对发现于2004～2006年间的9件甘肃鸟标本进行形态的详细观察,补充描述甘肃鸟新的骨骼特征,包括侧面保存的胸骨、有较完整的镰刀形龙骨突及胸骨背侧特征等;部分前肢骨骼上有位于关节位置、呈短长方形的尺腕骨和桡腕骨;指式"2-3-1",小指骨的爪节完全退化消失;后肢各趾中第1趾节最长,趾爪短小且弯曲度小;第Ⅰ趾相对较短、细弱,与其他趾相对握;第Ⅲ趾粗壮,略短于第Ⅳ趾。在胫跗骨和跗跖骨关节处保存有鳞片状的皮肤印痕,趾骨间有蹼的印痕。通过指示性骨骼测量的三元分析,得出甘肃鸟是一类善飞的潜水鸟,其习性接近于部分现生的鸭科成员,与之前有关甘肃鸟生活习性的推测较为接近。     

Prediction of body weight of fossil Artiodactyla

Many dimensions of the postcranial skeleton of ruminant artiodactyls scale closely with body weight and are therefore potentially useful as predictors of body weight in fossil species. Using 45 dimensions of the skeleton a series of predictive equations was generated based on the scaling relationships of the family Bovidae. As a test of their usefulness these equations were used to predict body weights of a number of living ruminant artiodactyls, and six genera of fossil artiodactyls. For most species body weight estimates within 25° of actual weight were given by the mean of the predicted weights from all measurements except lengths of long bones. While femur length was a reasonable predictor of body weight, lengths of distal long bones were unreliable and should not be used as indicators of relative or absolute body weights. Some non-length measurements are biased in certain taxonomic groups; the possibility of erroneous estimates from such measurements can be reduced by using as many estimators of body weight as are available. No species of artiodactyl tested is so highly modified in all dimensions that all results were erroneous. Subsets of measurements which might be available from a typical fossil fragment also gave reliable results.     

Proportions and variability in the Indian lorises: Bone weight observations onLoris tardigradus lydekkerianus andNycticebus coucang

Thirty uniformly prepared, disarticulated complete skeletons of adultLoris tardigradus lydekkerianus andNycticebus coucang have been weighed for preliminary study of the weight relations between different major skeletal parts. In these forms, combined relative weight of the precaudal vertebrae, ribs and sternum surpasses the averages for the rest of the skeletal parts. The weight of the skull equals one-fifth of the total skeletal weight inLoris andNycticebus. The weight of the skeletons of the limbs (including the shoulder girdle and the hip bones) contributes less than half of the total skeletal weight in lorises. The bones of the upper limbs are lighter than those of the lower limbs in the 2 series examined.Loris andNycticebus are distinguished by having the proportionately heaviest axial skeleton and skull and the lowest relative weights of the bones of the 4 limbs. The combined relative skeletal weight of the upper and lower limbs ranges between 45.34 and 50.01 inLoris andNycticebus. The relative weight of the skeletons of the hands and feet are almost similar to the corresponding weights in the 2 series.As far as the weights of the different skeletal parts are concerned, there is no relative asymmetry in the 2 series ofLoris andNycticebus examined.     

Directional asymmetry in the limbs,skull and pelvis of the silver fox (V. vulpes)

Directional asymmetry (DA) is a characteristic of most vertebrates, most strikingly exhibited by the placement of various organs (heart, lungs, liver, etc.) but also noted in small differences in the metrics of skeletal structures such as the pelvis of certain fish or sauropsids. We have analyzed DA in the skeleton of the fox (V. vulpes), using ～1,000 radiographs of foxes from populations used in the genetic analysis of behavior and morphology. Careful measurements from this robust data base demonstrate that: 1) DA occurs in the limb bones, the ileum, and ischium and in the mandible; 2) regardless of the direction of the length asymmetry vector of a particular skeletal unit, the vectorial direction of length is always opposite to that of width; 3) with the exception of the humerus and radius, there is no correlation or inverse correlation between vectorial amplitudes or magnitudes of bone asymmetries. 4) Postnatal measurements on foxes demonstrate that the asymmetry increases after birth and continues to change (increasing or decreasing) during postnatal growth. 5) A behavior test for preferential use of a specific forelimb exhibited fluctuating asymmetry but not DA. None of the skeletal asymmetries were significantly correlated with a preferential use of a specific forelimb. We suggest that for the majority of fox skeletal parameters, growth on the right and left side of the fox are differentially biased resulting in fixed differences between the two sides in either the rate of growth or the length of the period during which growth occurs. Random effects around these fixed differences perturb the magnitude of the effects such that the magnitudes of length and width asymmetries are not inversely correlated at the level of individual animals. J. Morphol., 2010. © 2010 Wiley‐Liss, Inc.