Impacts of gene bioaugmentation with pJP4-harboring bacteria of 2,4-D-contaminated soil slurry on the indigenous microbial community

Gene bioaugmentation is a bioremediation strategy that enhances biodegradative potential via dissemination of degradative genes from introduced microorganisms to indigenous microorganisms. Bioremediation experiments using 2,4-dichlorophenoxyacetic acid (2,4-D)-contaminated soil slurry and strains of Pseudomonas putida or Escherichia coli harboring a self-transmissible 2,4-D degradative plasmid pJP4 were conducted in microcosms to assess possible effects of gene bioaugmentation on the overall microbial community structure and ecological functions (carbon source utilization and nitrogen transformation potentials). Although exogenous bacteria decreased rapidly, 2,4-D degradation was stimulated in bioaugmented microcosms, possibly because of the occurrence of transconjugants by the transfer of pJP4. Terminal restriction fragment length polymorphism analysis revealed that, although the bacterial community structure was disturbed immediately after introducing exogenous bacteria to the inoculated microcosms, it gradually approached that of the uninoculated microcosms. Biolog assay, nitrate reduction assay, and monitoring of the amoA gene of ammonia-oxidizing bacteria and nirK and nirS genes of denitrifying bacteria showed no irretrievable depressive effects of gene bioaugmentation on the carbon source utilization and nitrogen transformation potentials. These results may suggest that gene bioaugmentation with P. putida and E. coli strains harboring pJP4 is effective for the degradation of 2,4-D in soil without large impacts on the indigenous microbial community.     

Use of Chicken Manure Extract for Biostimulation and Enhancement of Perchlorate Rhizodegradation in Soil and Water Media

The influence of biostimulation using dissolved organic carbon (DOC) on rhizodegradation of perchlorate and plant uptake was studied under greenhouse conditions using soil and hydroponic bioreactors. One set of bioreactors planted with willow (Salix babylonica) plants was spiked with 300 mg L^?1 DOC in the form of chicken manure extract, whereas a second set was not treated with DOC. A similar experiment without willow plants was run in parallel to the planted bioreactors. The planted soil bioreactors amended with DOC reduced perchlorate from 65.85 to 2.67 mg L^?1 in 21 days for humic soil (95.95% removal) and from 68.99 to 0.06 mg L^{? 1} for sandy loam (99.91% removal) in 11 days. Nonplanted DOC treated soil bioreactors achieved complete perchlorate removal in 6 and 8 days for humic and sandy loam, respectively. Both planted and nonplanted soil bioreactors without DOC removed > 95% perchlorate within 8 days. Planted soil bioreactors respiked with perchlorate reduced perchlorate to nondetectable levels in 6 days. Hydroponics experiment amended with DOC reduced perchlorate from approximately 100 mg L^{? 1} to nondetectable levels within 7 to 9 days. Hydroponic bioreactors without DOC had low perchlorate removal rates, achieving 30% removal in 42 days. Leaf samples from sandy loam soil bioreactors without DOC had four times perchlorate phytoaccumulation than the DOC-treated plants. Similar results were obtained with the nonplanted bioreactors. Persistence of perchlorate in solution of planted hydroponic bioreactors without DOC amendment suggested that natural DOC from the plant exudates was not enough to biostimulate perchlorate reducing microbes. The hydroponic bioreactor study provided evidence that DOC is a limiting factor in the rhizodegradation of perchlorate.     

Enhanced uptake of Cd by biofilm forming Cd resistant plant growth promoting bacteria bioaugmented to the rhizosphere of Vetiveria zizanioides

Abstract

Heavy metals are the major cause of pollution and cadmium is one among the highly toxic metals discharged into the environment from various industries. The current study was focused on the bioremoval of cadmium by phyto and rhizoremediation approach using Vetiveria zizanioides. The bacterial strains were isolated from wetland paddy rhizosphere soil and the isolate VITJAN13 was found to be a biofilm forming Cd resistant plant growth promoting rhizobacteria (PGPR). The 16S rRNA gene sequencing revealed VITJAN13 to be the closest neighbor of Aeromonas sp. and was submitted to Genbank with the accession number KX770741. Further, pot culture studies indicated that the treatments bioaugmented with VITJAN13 increased the root length and shoot height by 21.4 and 17.36%, respectively as compared to the non-augmented plants. Hence, bioaugmentation of Aeromonas sp. in the rhizosphere of Vetiveria zizanioides enhanced the uptake of cadmium by 67.7% in the soil treated with 15?mg/kg of Cd to that of the phytoremediation setup.     

种植阔叶树种和毛竹对土壤有机碳矿化与微生物群落结构的影响

为探明种植阔叶树种和毛竹对土壤有机碳矿化与微生物群落特征的影响,本研究通过盆栽试验和室内培养法比较分析种植香樟、木荷、青冈等阔叶树种与毛竹的土壤有机碳矿化速率和累计矿化量,并结合末端限制性片段长度多态性(T-RFLP)以及荧光定量PCR技术,分析土壤细菌、真菌群落组分与数量特征.结果表明:与种植阔叶树种的土壤相比,种植...     

Increasing ibuprofen degradation in constructed wetlands by bioaugmentation with gravel containing biofilms of an ibuprofen‐degrading Sphingobium yanoikuyae

The aim of this study was to investigate the removal of ibuprofen in laboratory scale constructed wetlands. Four (planted and unplanted) laboratory‐scale horizontal subsurface flow constructed wetlands were supplemented with ibuprofen in order to elucidate (i) the role of plants on ibuprofen removal and (ii) to evaluate the removal performance of a bioaugmented lab scale wetland. The planted systems showed higher ibuprofen removal efficiency than an unplanted one. The system planted with Juncus effusus was found to have a higher removal rate than the system planted with Phalaris arundinacea. The highest removal rate of ibuprofen was found after inoculation of gravel previously loaded with a newly isolated ibuprofen‐degrading bacterium identified as Sphingobium yanoikuyae. This experiment showed that more than 80 days of CW community adaptation for ibuprofen treatment could be superseded by bioaugmentation with this bacterial isolate.     

竹茶混交模式对表层土壤有机碳储量及组分的影响

为探究毛竹林下种植茶树对土壤有机碳储量与碳组分的影响,该研究以毛竹纯林、竹茶混交林和常绿阔叶林为研究对象,采集这3种林分类型的表层(0～10 cm)土壤,测定土壤有机碳(SOC)、碳组分、生物与非生物因素指标。结果表明:(1)竹茶混交林林下植物多样性相较于毛竹纯林显著降低,但其土壤有机碳密度(22.54±2.09)t·hm^-2、碳组分与毛竹纯林无显著差异(P>0.05)。竹茶混交林的矿物结合态有机碳(MOC)为(20.13±1.83)g·kg^-1,占总有机碳的92.66%。常绿阔叶林土壤有机碳密度比竹茶混交林和毛竹纯林高土壤有机碳密度分别高41.15%和41.00%(P<0.05)。(2)3种林分类型土壤微生物量碳(MBC)含量范围为0.58～3.08 g·kg^-1,土壤16S rRNA丰度范围为2.18×10¹⁰ ～5.65×10¹⁰copies·g^-1,固碳基因cbbL丰度范围为0.37×10⁸～ 1.10 ×10⁸ copies·g^-1,土壤微生物碳利用效率范围为0.03～0.28; 3种林分类型之间微生物相关指标不存在显著差异(P>0.05)。(3)3种林分类型SOC与土壤pH、砂粒含量和地上凋落物生物量呈显著负相关,与土壤黏粒含量、粉粒含量、总氮、C:N、总磷和铵态氮含量呈显著正相关(P<0.05)。(4)就不同碳组分而言,颗粒有机碳(POC)和MOC均与土壤pH、砂粒含量和根系生物量呈显著负相关,与土壤含水量、黏粒含量、粉粒含量、总氮、C:N、总磷和铵态氮含量呈显著正相关(P<0.05)。综上表明,竹茶混交改造会造成原生毛竹纯林林下植被多样性下降,但并未造成土壤碳储量下降; 而相较于常绿阔叶林,毛竹经营措施需要改进,以提升其碳汇效益。     

胶州湾典型河口湿地土壤活性有机碳和酶活性对互花米草入侵的响应

以胶州湾洋河口湿地为研究对象,按照互花米草入侵年份(0、1、5、8年)分层采集土壤样品(0—10、10—20、20—40 cm和40—60 cm),研究土壤活性有机碳(LOC)和酶(脲酶、过氧化氢酶、碱性磷酸酶、蔗糖酶)活性的变化,分析土壤活性有机碳和酶活性及两者相关性对互花米草入侵的响应。结果表明:与光滩相比,互花米草入侵增加了表层土壤LOC含量,且随着入侵时间的延长显著增加(P0.05)。同时也改变了土壤LOC垂直分布规律,除光滩和入侵1年样地表现出沿剖面逐渐上升之外,其他样地表现为沿剖面先上升后下降趋势;互花米草入侵提高了河口湿地土壤酶活性,但并未改变酶活性随深度增加而逐渐降低的分布规律。随着入侵时间的延长4种酶活性变化趋势有所差异,过氧化氢酶和蔗糖酶活性变化趋势一致,表现为随入侵时间延长先急剧增加后逐渐减少,而碱性磷酸酶和脲酶活性随着入侵时间的延长逐渐增加。Pearson相关性分析结果显示,土壤LOC和酶活性呈显著负相关且互花米草入侵时间越长两者间相关性越低,8年后无显著相关性。     

Microcosm evaluation of bioaugmentation after field-scale thermal treatment of a TCE-contaminated aquifer

This paper investigates effects of combining thermal and biological remediation, based on laboratory studies of trichloroethene (TCE) degradation. Aquifer material was collected 6 months after terminating a full-scale Electrical Resistance Heating (ERH), when the site had cooled from approximately 100°C to 40°C. The aquifer material was used to construct bioaugmented microcosms amended with the mixed anaerobic dechlorinating culture, KB-1^TM, and an electron donor (5 mM lactate). Microcosms were bioaugmented during cooling at 40, 30, 20, and 10°C, as temperatures continually decreased during laboratory incubation. Redox conditions were generally methanogenic, and electron donors were present to support dechlorination. For microcosms bioaugmented at 10°C and 20°C, dechlorination stalled at cis-dichloroethene (cDCE) and vinyl chloride (VC) 150 days after bioaugmentation. However, within 300 days of incubation ethene was produced in the majority of these microcosms. In contrast, dechlorination was rapid and complete in microcosms bioaugmented at 30°C. Microcosms bioaugmented at 40°C also showed rapid dechlorination, but stalled at cDCE with partial VC and ethene production, even after 150 days of incubation when the temperature had decreased to 10°C. These results suggest that sequential bioremediation of TCE is possible in field-scale thermal treatments after donor addition and bioaugmentation and that the optimal bioaugmentation temperature is approximately 30°C. When biological and thermal remediations are to be applied at the same location, three bioremediation approaches could be considered: (a) treating TCE in perimeter areas outside the source zone at temperatures of approximately 30°C; (b) polishing TCE concentrations in the original source zone during cooling from approximately 30°C to ambient groundwater temperatures; and (c) using bioremediation in downgradient areas taking advantages of the higher temperature and potential release of organic matter.     

Dynamics of bacterial populations during bench‐scale bioremediation of oily seawater and desert soil bioaugmented with coastal microbial mats

This study describes a bench‐scale attempt to bioremediate Kuwaiti, oily water and soil samples through bioaugmentation with coastal microbial mats rich in hydrocarbonoclastic bacterioflora. Seawater and desert soil samples were artificially polluted with 1% weathered oil, and bioaugmented with microbial mat suspensions. Oil removal and microbial community dynamics were monitored. In batch cultures, oil removal was more effective in soil than in seawater. Hydrocarbonoclastic bacteria associated with mat samples colonized soil more readily than seawater. The predominant oil degrading bacterium in seawater batches was the autochthonous seawater species Marinobacter hydrocarbonoclasticus. The main oil degraders in the inoculated soil samples, on the other hand, were a mixture of the autochthonous mat and desert soil bacteria; Xanthobacter tagetidis, Pseudomonas geniculata, Olivibacter ginsengisoli and others. More bacterial diversity prevailed in seawater during continuous than batch bioremediation. Out of seven hydrocarbonoclastic bacterial species isolated from those cultures, only one, Mycobacterium chlorophenolicum, was of mat origin. This result too confirms that most of the autochthonous mat bacteria failed to colonize seawater. Also culture‐independent analysis of seawater from continuous cultures revealed high‐bacterial diversity. Many of the bacteria belonged to the Alphaproteobacteria, Flavobacteria and Gammaproteobacteria, and were hydrocarbonoclastic. Optimal biostimulation practices for continuous culture bioremediation of seawater via mat bioaugmentation were adding the highest possible oil concentration as one lot in the beginning of bioremediation, addition of vitamins, and slowing down the seawater flow rate.     

Performance of the biological aerated filter bioaugmented by a yeast <Emphasis Type="Italic">Magnusiomyces ingens</Emphasis> LH-F1 for treatment of Acid Red B and microbial community dynamics

Biological aerated filters (BAFs) were constructed and operated for assessing the effectiveness of bacterial community bioaugmented by a yeast Magnusiomyces ingens LH-F1 for treatment of azo dye Acid Red B (ARB). Dynamics of both bacterial and fungal communities were analyzed through MiSeq sequencing method. The results showed that the bioaugmented BAF displayed obviously better performance for decolorization, COD removal and detoxification of ARB wastewater than the other two which were inoculated with activated sludge (AS) and single M. ingens LH-F1, respectively. Moreover, the bioaugmented BAF also exhibited higher tolerance and stability to shock loading. MiSeq sequencing results demonstrated that both of bacterial and fungal communities remarkably shifted with operation conditions, and the increasing fungal diversity in the bioaugmented BAF was probably related to the relatively high biodegradation and detoxification efficiency. Furthermore, M. ingens LH-F1 survived in the bioaugmented BAF and became one of the dominant fungal species. Therefore, bioaugmentation with yeast M. ingens LH-F1 was successful for improving traditional biological processes aiming at treatment of azo compounds. This method was also potentially useful and meaningful for treating other recalcitrant organic pollutants in practical applications.     

云雾山草原区不同植被恢复阶段土壤团聚体活性有机碳分布特征

以宁夏云雾山草原自然保护区不同植被群落为研究对象,对0～20 cm土层土壤团聚体活性有机碳分布特征进行分析.结果表明:(1)不同植被群落土壤团聚体活性有机碳含量顺序为退耕草地<百里香群落<铁杆蒿群落<大针茅群落<长芒草群落,与退耕草地相比,封育草地各粒径团聚体活性有机碳含量均显著提高 (P<0.05),表明随着植被的恢复土壤团聚体活性有机碳含量提高并趋于稳定,土壤碳汇效应有可能增强.(2)植被恢复主要影响大团聚体(>0.25 mm)中活性有机碳含量,其中0.5～0.25 mm粒径团聚体中活性有机碳含量最高,微团聚体(<0.25 mm)中活性有机碳含量最低.(3)植被恢复前期(退耕草地-铁杆蒿群落)0～10 cm土层>0.5 mm粒径团聚体中活性有机碳含量较10～20 cm土层有所增加,<0.5 mm粒径团聚体活性有机碳含量变化不大,恢复至后期到长芒草阶段时,0～10 cm土层<0.5 mm粒径团聚体中活性有机碳含量也开始提高, 各粒径0～10 cm土层团聚体活性有机碳含量均比10～20 cm土层有所提高.(4)相关性分析表明,土壤团聚体活性有机碳含量与土壤团聚体总有机碳含量呈极显著线性正相关关系(r=0.9394),团聚体活性有机碳含量可以作为衡量土壤团聚体有机碳动态的一个敏感性指标.     

Functional Establishment of Introduced Chlorobenzoate Degraders Following Bioaugmentation with Newly Activated Soil

Introduced degraders often do not survive when applied to polluted sites; however, the potential for successful bioaugmentation may be increased if newly activated soil (containing indigenous degrader populations recently exposed to the contaminant) or potentially active soil (containing indigenous degrader populations not previously exposed to the contaminant) is used as the inoculant. To investigate this concept, Madera and Oversite soils were amended with 0 or 500 micrograms of 2-, 3-, or 4-chlorobenzoate per gram soil. The Madera degraded 2-chlorobenzoate while the Oversite degraded 3- and 4-chlorobenzoate. After 22 days of incubation, non-active soils that had not degraded chlorobenzoate were bioaugmented with the appropriate activated soil that had been exposed to and degraded chlorobenzoate. Thus, Oversite soil that had not degraded 2-chlorobenzoate was bioaugmented with Madera soil that had degraded 2-chlorobenzoate. Likewise, Madera soil that had not degraded 3- or 4-chlorobenzoate was bioaugmented with the Oversite soil that had degraded 3- or 4-chlorobenzoate. Additionally, the non-active soils were bioaugmented with the corresponding potentially active soils. The Oversite soil amended with activated Madera soil degraded the 2-chlorobenzoate within 3 days of bioaugmentation. The Madera soil amended with activated Oversite soils degraded the 3- and 4-chlorobenzoate within 20 and 6 days, respectively. Large degrader populations developed in microcosms bioaugmented with activated soil, and shifts in the 3- and 4-CB degrader community structures occurred following bioaugmentation. In contrast, bioaugmentation with potentially active soil did not impact degradation. The results indicate the potential for bioaugmentation with newly activated soil to enhance contaminant degradation.     

Bioaugmenting anaerobic digestion of biosolids with selected strains of Bacillus, Pseudomonas, and Actinomycetes species for increased methanogenesis and odor control

The objective of this study was to evaluate the effects of bioaugmenting anaerobic biosolids digestion with a commercial product containing selected strains of bacteria from genera Bacillus, Pseudomonas, and Actinomycetes, along with ancillary organic compounds containing various micronutrients. Specifically, the effects of the bioaugment in terms of volatile solids destruction and generation and fate of odor-causing compounds during anaerobic digestion and during storage of the digested biosolids were studied. Two bench-scale anaerobic digesters receiving primary and secondary clarifier biosolids from various full-scale biological wastewater treatment plants were operated. One of the digesters received the bioaugment developed by Organica Biotech, while the other was operated as control. The bioaugmented digester generated 29% more net CH₄ during the 8 weeks of operation. In addition, the average residual propionic acid concentration in the bioaugmented digester was 54% of that in the control. The monitoring of two organic sulfide compounds, methyl mercaptan (CH₃SH) and dimethyl sulfide (CH₃SCH₃), clearly demonstrated the beneficial effects of the bioaugmentation in terms of odor control. The biosolids digested in the bioaugmented digester generated a negligible amount of CH₃SH during 10 days of post-digestion storage, while CH₃SH concentration in the control reached nearly 300 ppm_v during the same period. Similarly, peak CH₃SCH₃ generated by stored biosolids from the bioaugmented digester was only 37% of that from the control.     

红壤侵蚀地不同人工恢复林对土壤总有机碳和活性有机碳的影响

土壤有机碳尤其是活性有机碳可快速反映土壤肥力和土壤质量的恢复程度。研究了南方红壤侵蚀地3种典型人工恢复林(马尾松与阔叶复层林(Pinus massoniana-broadleaved multiple layer forest(PB))、木荷与马尾松混交林(Schima superba-Pinus massoniana mixed forest(SP))、阔叶混交林(broad-leaved mixed forest(BF)))土壤(0—60 cm)总有机碳和不同活性有机碳的垂直分布特征及其差异。结果表明:不同恢复林分土壤总有机碳(SOC)含量和有机碳储量均表现为PBSPBF,均随土层深度的增加而逐渐降低;土壤表层有机碳富集系数为0.49—0.55,表明表层土壤具有较高的有机碳恢复水平和保持强度。不同林分土壤易氧化有机碳(ROC)、水溶性有机碳(DOC)和微生物量碳(MBC)含量变化范围为0.92—9.17 g/kg、535.89—800.46 mg/kg和27.24—261.31 mg/kg,且均随土层深度的增加而降低,土壤活性有机碳含量总体以BF较高。土壤活性有机碳分配比例以ROC/SOC最高,DOC/SOC次之,MBC/SOC最低,且随土层深度的增加,ROC/SOC的值呈逐渐降低趋势,DOC/SOC的值却呈逐渐升高趋势,MBC/SOC(微生物熵)则变化规律不明显;不同林分间土壤活性有机碳分配比例以BF最高,表明阔叶混交林更有利于活性碳的积累。因此,对于红壤侵蚀地森林恢复初期,可适当密植和立体种植,以提高土壤碳储量和土壤肥力,并在马尾松等先锋树种林分中补植阔叶树种,以增加土壤活性有机碳含量,从而有利于退化生态系统土壤速效养分和土壤功能的快速恢复。     

滇南喀斯特断陷盆地土地利用方式对土壤有机碳及其活性组分的影响

土地利用方式是影响土壤有机碳库的重要因素,为探究喀斯特断陷盆地土壤有机碳库对土地利用方式及环境因素的响应,以滇南喀斯特地区5种典型土地利用方式(耕地、草地、灌丛、人工林、天然林)为研究对象,分析不同土地利用方式土壤有机碳(SOC)及活性有机碳(LOC)组分,即可溶性有机碳(DOC)、易氧化性有机碳(EOC)及微生物量碳(MBC)的含量、储量及分配比例在土壤垂直剖面(0-60 cm)的变化特征。结果表明：5种土地利用方式的SOC含量随土层深度的增加逐渐降低,其储量依次为灌丛(191.77 t/hm²)、草地(166.86 t/hm²)、耕地(142.47 t/hm²)、人工林(134.31 t/hm²)和天然林(102.62 t/hm²);EOC和MBC的平均含量及储量均以草地及灌丛最高、人工林及天然林次之,二者在土壤垂直剖面上与SOC含量的变化特征一致,但EOC和MBC含量在土层间的下降幅度大于SOC;土地利用方式和土层深度对DOC无显著影响(P>0.05);活性有机碳的分配比例受土地利用方式及土层深度的显著影响(P<0.01),其中人工林的EOC/SOC和MBC/SOC显著低于草地、灌丛及天然林。通径分析指出SOC和EOC主要受C/P比、全磷、砂粒和交换性钙的影响,砂粒和C/P比是影响MBC的主要因子。研究阐明在喀斯特断陷盆地地区EOC和MBC对土地利用方式的响应比SOC更敏感。另外,今后在土壤碳库的研究中应更多关注土壤磷和物理结构对其的影响。     

Effect of bioaugmentation and supplementary carbon sources on degradation of polycyclic aromatic hydrocarbons by a soil-derived culture

The degradation of polycyclic aromatic hydrocarbons (PAHs) by an undefined culture obtained from a PAH-polluted soil and the same culture bioaugmented with three PAH-degrading strains was studied in carbon-limited chemostat cultures. The PAHs were degraded efficiently by the soil culture and bioaugmentation did not significantly improve the PAH degrading performance. The presence of PAHs did, however, influence the bacterial composition of the bioaugmented and non-bioaugmented soil cultures, resulting in the increase in cell concentration of sphingomonad strains. the initial enhancement of the degradation of the PAHs by biostimulation gradually disappeared and only the presence of salicylate in the additional carbon sources had a lasting slightly stimulating effect on the degradation of phenanthrene. The results suggest that bioaugmentation and biostimulation have limited potential to enhance PAH bioremediation by culture already proficient in the degradation of such contaminants.     

Secondary successional trajectories of structural and catabolic bacterial communities in oil‐polluted soil planted with hybrid poplar

Poplars have widely been used for rhizoremediation of a broad range of organic contaminants for the past two decades. Still, there is a knowledge gap regarding the rhizosphere‐associated bacterial communities of poplars and their dynamics during the remediation process. It is envisaged that a detailed understanding of rhizosphere‐associated microbial populations will greatly contribute to a better design and implementation of rhizoremediation. To investigate the long‐term succession of structural and catabolic bacterial communities in oil‐polluted soil planted with hybrid poplar, we carried out a 2‐year field study. Hybrid aspen (Populus tremula × Populus tremuloides) seedlings were planted in polluted soil excavated from an accidental oil‐spill site. Vegetated and un‐vegetated soil samples were collected for microbial community analyses at seven different time points during the course of 2 years and sampling time points were chosen to cover the seasonal variation in the boreal climate zone. Bacterial community structure was accessed by means of 16S rRNA gene amplicon pyrosequencing, whereas catabolic diversity was monitored by pyrosequencing of alkane hydroxylase and extradiol dioxygenase genes. We observed a clear succession of bacterial communities on both structural and functional levels from early to late‐phase communities. Sphingomonas type extradiol dioxygenases and alkane hydroxylase homologs of Rhodococcus clearly dominated the early‐phase communities. The high‐dominance/low‐diversity functional gene communities underwent a transition to low‐dominance/high‐diversity communities in the late phase. These results pointed towards increased catabolic capacities and a change from specialist to generalist strategy of bacterial communities during the course of secondary succession.     

Bioaugmentation with Pseudomonas sp. strain MHP41 promotes simazine attenuation and bacterial community changes in agricultural soils

Bioremediation is an important technology for the removal of persistent organic pollutants from the environment. Bioaugmentation with the encapsulated Pseudomonas sp. strain MHP41 of agricultural soils contaminated with the herbicide simazine was studied. The experiments were performed in microcosm trials using two soils: soil that had never been previously exposed to s -triazines (NS) and soil that had >20 years of s -triazine application (AS). The efficiency of the bioremediation process was assessed by monitoring simazine removal by HPLC. The simazine-degrading microbiota was estimated using an indicator for respiration combined with most-probable-number enumeration. The soil bacterial community structures and the effect of bioaugmentation on these communities were determined using 16S RNA gene clone libraries and FISH analysis. Bioaugmentation with MHP41 cells enhanced simazine degradation and increased the number of simazine-degrading microorganisms in the two soils. In highly contaminated NS soil, bioaugmentation with strain MHP41 was essential for simazine removal. Comparative analysis of 16S rRNA gene clone libraries from NS and AS soils revealed high bacterial diversity. Bioaugmentation with strain MHP41 promoted soil bacterial community shifts. FISH analysis revealed that bioaugmentation increased the relative abundances of two phylogenetic groups ( Acidobacteria and Planctomycetes ) in both soils. Although members of the Archaea were metabolically active in these soils, their relative abundance was not altered by bioaugmentation.     

Molinate biodegradation in soils: natural attenuation versus bioaugmentation

The aims of the present study were to assess the potential of natural attenuation or bioaugmentation to reduce soil molinate contamination in paddy field soils and the impact of these bioremediation strategies on the composition of soil indigenous microbiota. A molinate mineralizing culture (mixed culture DC) was used as inoculum in the bioaugmentation assays. Significantly higher removal of molinate was observed in bioaugmentation than in natural attenuation microcosms (63 and 39 %, respectively) after 42 days of incubation at 22 °C. In the bioaugmentation assays, the impact of Gulosibacter molinativorax ON4^T on molinate depletion was observed since the gene encoding the enzyme responsible for the initial molinate breakdown (harboured by that actinobacterium) was only detected in inoculated microcosms. Nevertheless, the exogenous mixed culture DC did not overgrow as the heterotrophic counts of the bioaugmentation microcosms were not significantly different from those of natural attenuation and controls. Moreover, the actinobacterial clone libraries generated from the bioaugmentation microcosms did not include any 16S rRNA gene sequences with significant similarity to that of G. molinativorax ON4^T. The multivariate analysis of the 16S rRNA DGGE patterns of the soil microcosm suggested that the activity of mixed culture DC did not affect the soil bacterial community structure since the DGGE patterns of the bioaugmentation microcosms clustered with those of natural attenuation and controls. Although both bioremediation approaches removed molinate without indigenous microbiota perturbation, the results suggested that bioaugmentation with mixed culture DC was more effective to treat soils contaminated with molinate.     

林冠氮添加和林下植被去除对杉木林土壤有机碳组分的影响

为探讨氮添加和林下植被管理对杉木人工林土壤有机碳组分的影响,以福建沙县官庄国有林场杉木人工林为对象,设置对照（CK）、林冠氮添加（CN）、林下植被去除（UR）、林冠氮添加和林下植被去除（CNUR）4个处理的野外控制实验,研究林冠氮添加和林下植被去除对土壤总有机碳、惰性有机碳、易氧化有机碳、颗粒有机碳、微生物生物量碳和水溶性有机碳的影响。结果表明：5年CN添加处理显著降低易氧化有机碳（10—20 cm）和微生物生物量碳（20—40 cm）含量,增加表层土壤颗粒有机碳占总有机碳的比例。UR处理对土壤有机碳组分的作用不显著,而CNUR处理显著降低表层土壤水溶性有机碳含量及其比例。土壤各有机碳组分均与土壤含水量、可溶性有机氮、微生物生物量氮和铵态氮呈显著正相关。研究表明,土壤活性有机碳比惰性有机碳对林冠氮添加（5年）的响应更敏感,且表现为中下层土壤响应大于表层土壤,短期氮添加能促进土壤活性有机碳的分解,而林下植被去除在短时间内可能通过改变土壤含水量和可利用氮减缓有机碳的分解与转化,从而补偿由于氮添加引起的土壤活性有机碳下降,未来需要通过长期氮添加实验进一步研究土壤有机碳动态变化的响应机制。