Chemically gated electron transfer. A means of accelerating and regulating rates of biological electron transfer

Long-range protein electron transfer [ET] reactions may be relatively slow because of long ET distance and low driving force. It is possible to dramatically increase the rate of such nonadiabatic reactions by using an adiabatic chemical reaction to activate the system for rapid ET. Three such examples are discussed; nitrogenase, pyruvate:ferredoxin oxidoreductase, and the methylamine dehydrogenase-amicyanin complex. In each example, the faster activated ET reaction is gated (i.e., rate-limited) by the chemical reaction. However, the reaction rate is still orders of magnitude greater than that of the ungated true ET reaction in the absence of chemical activation. Models are presented to describe the mechanisms of activation in the context of ET theory, and the relevance of such chemically gated ET to the regulation of metabolism is discussed.     

A kinetic perspective on extracellular electron transfer by anode-respiring bacteria

In microbial fuel cells and electrolysis cells (MXCs), anode-respiring bacteria (ARB) oxidize organic substrates to produce electrical current. In order to develop an electrical current, ARB must transfer electrons to a solid anode through extracellular electron transfer (EET). ARB use various EET mechanisms to transfer electrons to the anode, including direct contact through outer-membrane proteins, diffusion of soluble electron shuttles, and electron transport through solid components of the extracellular biofilm matrix. In this review, we perform a novel kinetic analysis of each EET mechanism by analyzing the results available in the literature. Our goal is to evaluate how well each EET mechanism can produce a high current density (>10 A m⁻²) without a large anode potential loss (less than a few hundred millivolts), which are feasibility goals of MXCs. Direct contact of ARB to the anode cannot achieve high current densities due to the limited number of cells that can come in direct contact with the anode. Slow diffusive flux of electron shuttles at commonly observed concentrations limits current generation and results in high potential losses, as has been observed experimentally. Only electron transport through a solid conductive matrix can explain observations of high current densities and low anode potential losses. Thus, a study of the biological components that create a solid conductive matrix is of critical importance for understanding the function of ARB.     

Electrode surface microstructures in studies of biological electron transfer

Specifically designed electrode surfaces that can exchange electrons directly with redox proteins and enzymes are providing new approaches to investigating electrochemical processes in bioenergetics.     

Theory of intermolecular electron transfer in nanoscale biological structures

Macromolecular biological systems performing directed electron transfer are nano-sized structures. The distance between carrier molecules (cofactors), which represent practically isolated electron localization centers, reaches tens of angstroms. The electron transfer theory based on the concept of delocalized electron states, which is conventionally used in biophysics, is unable to adequately interpret the results of concrete observations in many cases. On the basis of the theory of electronic transitions in the case of localized states, developed in the physics of disordered matter, a mechanism of long-distance electron transfer in biological systems is suggested. The molecular relaxation of the microenvironment of electron localization centers that accompanies the electron transfer process is also considered.     

Theory of long-distance electron transfer in nanoscale biological structures

Macromolecular biological systems accomplishing the directed electron transfer are nano-sized structures. The distance between carrier molecules (cofactors), which represent practically isolated electron localization centers, reaches tens of angstroms. The electron transfer theory based on the concept of delocalized electron states, which is conventionally used in biophysics, is unable to adequately interpret the results of concrete observations in many cases. On the basis of the theory of electronic transitions in the case of localized states, developed in the physics of disorder matter, a mechanism of long distance electron transfer in biological systems is suggested. The molecular relaxation of the microenvironment of electron localization centers that accompanies the electron transfer process is also considered.     

Problems of the theory of electron transfer in biological systems

Based on comparative analysis, it is shown that the electron transfer theory traditionally used in biophysics is often unable to explain the electron transfer regularities observed in biological molecular systems. The data for seven electron transfer reactions (direct and reverse) that occur in bacterial photosynthetic reaction centers (mainly, purple bacteria Rhodobacter sphaeroides) have been analyzed. Conceivable reasons for the discrepancy between the theoretical and experimental data are discussed and some approaches to overcoming this contradiction are offered.     

Photo-induced charge transfer. A critical test of the mechanism and range of biological electron transfer processes.

The vibronic coupling theory of electron tunneling between biomolecules requires that all such tunnelings involve vibronic coupling, finds temperature dependence to tunneling at finite temperatures, and predicts relatively short tunneling distances. This theory might be expected to apply to most electron transfers involved in the membrane-bound electron transfer reactions of photosynthesis and oxidative phosphorylation. This paper calculates the properties of a weak charge-transfer optical absorption band, whose predicted characteristics are a direct and simple consequence of the model that describes vibronically coupled tunneling. The new absorption band provides the basis for a critical experimental test of the constructs and parameters of the tunneling theory. If the tunneling theory is valid, the oscillator strength of such bands will be the most reliable measure of the tunneling matrix element and of the distance between the sites exchanging an electron.     

A knapweed biological control perspective

Diffuse and spotted knapweed (Centaurea diffusa Lam. and C. stoebe micranthos (Gugler) Hayek) are Eurasian plants that devastate dry and mesic North American grasslands. They have a mutualistic association with arbuscular mycorrhizal fungal (AMF) phylotypes with hyphal links to nearby plants and a nutrient flux to the strongest sink, usually knapweed. They displace many AMF beneficial to grass and affect knapweed nutrient allocation, biology, knapweed insects and probably root necrosis and emergence of ant buried seed. AMF determined nutrient root or shoot allocation determines nutrient shoot and root allocation and the benefit to root or seed-head insect species and whether C. diffusa is an annual–biannual or a semelparous perennial needing 5 or more years to flower. Both knapweeds do well without its AMF phylotypes without competition in fertile soil. In grass in Eurasia, they have a community of seven seed-head species segregated by head development stage. Prolonged seed dormancy buffered knapweed decline that resulted in release of a surfeit seed-head species. The presence of an eliasome on the seed and vigorous seedling clumps suggests burial by myrmecochorous ants with AMF supplied carbon supporting their growth. The root species community is segregated by habitat, climate, root part, and size. With larval induced compensatory growth and AMF nutrient sharing, the growth of plants with and without a larva was the same. On feeding completion, a nutrient out flux from the attacked plants reduced growth; but without killing. This needs a dual species or a repeated single species attack. Root species packing increases knapweed utilization; but the four approved species are insufficient for maximum utilization. Two additions are suggested. The aim of the paper is to provide enough understanding of the AMF and its plant and insect interactions to facilitate knapweed biological control and avoid past mistakes.     

Effects of isotope substitution on intermolecular electron transfer in biological systems

Isotope effects on electron transfer reactions are discussed in terms of the multiphonon radiationless transition theory. The D₂0 substitution effect on the oxidation of cytochrome c (Kihara &; McCray, 1973) is analyzed. On the basis of these results the molecular mechanism for cytochrome c oxidation is proposed.     

Some important concepts in the current theories of electron transfer in biological systems

The main concepts pertinent to the current theories of electron transfer in biological systems are briefly presented. The different models used to evaluate the purely electronic factors of the transfer are reviewed.     

Hofmeister effects in supramolecular and biological systems

Specific ion effects, representative of near-universal Hofmeister phenomena, are illustrated in three different systems. These are the formation of supramolecular assemblies from cyclodextrins, the optical rotation of L-serine, and the growth rate of two kinds of microorganisms (Staphylococcus aureus and Pseudomonas aeruginosa). The strong specific ion effects can be correlated with the anion polarizabilities and related physico-chemical parameters. The results show the relevance of dispersion (non-electrostatic) forces in these phenomena.     

A possible biological role of the electron transfer between tyrosine and tryptophan. Gating of ion channels.

Experiments have demonstrated that four tryptophan residues are located near the tetrodotoxin binding site in Na+ channels, and that conserved tyrosine and tryptophan residues are located in the pore-forming region of voltage-sensitive K+ channels. This paper proposes an activation mechanism involving electron transfer between these residues. The K+ channel may be closed by four tyrosine residues forming hydrogen bonds with each other. After electron transfer, these hydrogen bonds will be broken, thereby opening the channel. The Na+ channel could be activated by a similar mechanism. This idea can be tested directly by observing tyrosine or tryptophan radicals when the channels are in the open state.     

Thermodynamics of electron transfer and its coupling to vectorial processes in biological membranes.

A method is developed to express the flux of an electron transfer reaction as a function of the conjugate force, the redox potential difference, throughout the nonlinear region. The flux can be expressed by a product of the hyperbolic sine of the force, a factor ("redox-poising parameter") determined by the redox potentials of subsystem (in certain cases by local pH's and pK's of subsystems), and some constants. This is analogous to the expression of the flux of a diffusion process by the product of its force and the concentration of the diffusing species. The redox-poising parameter corresponds to the concentration term. The expression is applied to redox chains in which electron transfers are coupled to vectorial processes such as proton translocation or electric current.     

Biological electron transfer

Many oxidoreductases are constructed from (a) local sites of strongly coupled substrate-redox cofactor partners participating in exchange of electron pairs, (b) electron pair/single electron transducing redox centers, and (c) nonadiabatic, long-distance, single-electron tunneling between weakly coupled redox centers. The latter is the subject of an expanding experimental program that seeks to manipulate, test, and apply the parameters of theory. New results from the photosynthetic reaction center protein confirm that the electronic-tunneling medium appears relatively homogeneous, with any variances evident having no impact on function, and that control of intraprotein rates and directional specificity rests on a combination of distance, free energy, and reorganization energy. Interprotein electron transfer between cytochromec and the reaction center and in lactate dehydrogenase, a typical oxidoreductase from yeast, are examined. Rates of interprotein electron transfer appear to follow intraprotein guidelines with the added essential provision of binding forces to bring the cofactors of the reacting proteins into proximity.