口蹄疫病毒结构蛋白VP0抑制I型干扰素信号通路的激活

[目的]研究口蹄疫病毒（FMDV）结构蛋白VP0对I型干扰素信号通路的影响。[方法]通过反转录PCR构建VP0真核表达载体,利用Western blotting验证VP0蛋白转染HEK-293T细胞后的表达情况;Real-time PCR检测VP0蛋白对FMDV在BHK细胞上复制的影响,检测VP0蛋白对SeV诱导的干扰素信号通路分子RIG-I、IRF3、IFN-β及下游刺激基因ISG15、ISG20表达的影响;双荧光素酶报告基因检测系统检测VP0蛋白对SeV诱导的IFN-β和NF-κB启动子激活以及对RIG-I样受体（RIG-I-like receptors,RLRs）信号通路分子激活IFN启动子的影响;免疫共沉淀检测VP0蛋白与RLRs信号通路中关键分子的相互作用。[结果]成功构建了pCAGGs-VP0真核表达载体,可以在HEK-293T细胞中表达;FMDV感染后的4-6 h,VP0蛋白显著促进FMDV在BHK细胞上的复制（P<0.01或P<0.05）;VP0蛋白明显抑制干扰素下游刺激基因的表达（P<0.01或P<0.05）。在双荧光素酶报告基因检测实验中,VP0蛋白抑制SeV诱导IFN-β和NF-κB的活化具有剂量依赖性（P<0.01）,并对RIG-I、MDA5、VISA、TBK1和IRF3介导的IFN-β产生具有抑制作用,但是对IRF7没有明显的影响。免疫共沉淀显示VP0蛋白可与IRF3发生相互作用。[结论]证实VP0蛋白可以通过与IRF3相互作用来抑制I型干扰素信号通路的激活。     

代谢工程强化脱氮副球菌DYTN-1去除氮素污染物

【目的】脱氮副球菌(Paracoccus denitrificans)是一种环境友好的α-变形菌纲菌株,在有氧条件下也可进行反硝化过程,具有较好的脱氮能力。本研究以脱氮副球菌DYTN-1为底盘细胞,筛选氮素诱导型启动子用于强化硝化和反硝化途径,进而达到代谢工程强化脱氮副球菌DYTN-1去除氮素污染物的目的。【方法】通过接合转移的方法分别将过表达amoA、amoB、hao和nirS基因的重组质粒导入脱氮副球菌DYTN-1细胞中。经过荧光定量检测和氮素定量检测对脱氮副球菌DYTN-1的基因元件和氮去除能力进行表征。【结果】从基因组中挖掘了6个受NO₂^‒、NO₃^‒和NH₄⁺诱导的启动子,诱导差异为2‒26倍;且过表达nirS的菌株用2 g/L KNO₃处理24 h后培养基中NO₃^‒的残余量为野生型菌株的67%。同时过表达hao和nirS基因的菌株在用1 g/L NH₄Cl和2 g/L KNO₃处理12 h后,其NO₃^‒的剩余量仅为野生型菌株的50%,且最终总氮的降解效率达79.5%,剩余总氮仅为野生型菌株的一半。【结论】上述研究表明,利用筛选获得的启动子工具在P. denitrificans DYTN-1中进行代谢工程改造强化氮素污染物的去除具有可行性。     

敲除LTA4H基因的PK-15细胞系构建及其对口蹄疫病毒复制的影响

【目的】利用CRISPR/Cas9基因编辑技术构建白三烯A4水解酶(leukotriene A4 hydrolase, LTA4H)基因缺失的猪肾细胞系(porcine kidney-15, PK-15),探究LTA4H对口蹄疫病毒(foot-and-mouth disease virus, FMDV)复制的影响,为开展LTA4H功能研究及调控病毒复制机制研究提供理论依据。【方法】设计2条针对猪LTA4H基因的引导RNA (small guide RNA, sgRNA),分别构建至载体pX459-puro-MCS中;将CRISPR重组质粒转染PK-15细胞,用嘌呤霉素(puromycin)抗生素筛选,并通过有限稀释法筛选单克隆细胞,之后通过Western blotting和测序检测LTA4H基因的敲除,获得LTA4H基因功能缺失细胞系。使用Western blotting、RT-qPCR及病毒滴度测定等方法检测敲除LTA4H基因后对FMDV复制及相关蛋白的表达情况。【结果】获得的单克隆敲除细胞系与野生型细胞相比,能够显著抑制FMDV复制。【结论】本研究成功构建了LTA4H基因敲除的PK-15细胞系,证明LTA4H对FMDV的复制具有促进作用,研究结果为后续LTA4H功能研究提供理论依据。     

口蹄疫病毒样颗粒诱导表达型载体的构建及其BHK-21细胞池的筛获

瞬时表达是目前利用哺乳动物细胞表达口蹄疫病毒(foot-and-mouth disease virus, FMDV)衣壳蛋白的主流方法。为实现染色体稳定表达FMDV衣壳蛋白并高效组装出病毒样颗粒(virus like particles, VLPs)，本研究构建了piggyBac (PB)转座-组成型表达、PB转座-四环素(tetracycline, Tet)诱导型表达两套质粒。利用荧光蛋白标记技术，验证了质粒的功能。通过抗生素筛选得到了组成型表达P12A3C (WT/L127P)基因的BHK-21细胞池(C-WT、C-L127P)和诱导型表达P12A3C (WT/L127P)基因的BHK-21细胞池(I-WT、I-L127P)。荧光观察和PCR检测证明了绿色荧光蛋白、3C蛋白酶、反向四环素转录激活因子等基因的稳定整合。Western blotting、酶联免疫吸附法(enzyme linked immunosorbent assay, ELISA)实验证明了细胞池I-L127P具有更强的衣壳蛋白和VLPs生产能力。本研究首次实现了哺乳动物细胞染色体诱导表达FMDV衣壳蛋白，有助于推动哺乳动物生产FMDV VLPs疫苗的技术工艺，也为构建其他蛋白的哺乳动物细胞诱导型表达系统提供了参考。     

来源于中国南海的微生物新种乙醇速生杆菌(Celeribacter ethanolicus)多相分类研究

【目的】研究来源于南海海水的一株速生杆菌属菌株NH195^T 的多相分类。【方法】采用表型、基因型和化学分类方法,并综合系统发育关系结果,分析菌株NH195^T 的分类学地位。【结果】菌株NH195^T 是一株革兰氏阴性、好氧、杆状、无运动性细菌;能积累Poly-β-hydroxybutyrate (PHB);能在0.5%-10.0% (质量体积比) NaCl 浓度,pH 5.0-9.0 和20-40 ℃ 条件下生长,最适NaCl 生长浓度为1.0%-3.0%;氧化酶、触酶和脲酶反应结果阳性。菌株NH195^T 主要呼吸醌为Q-10,主要脂肪酸为C_18:1ω7c、C_18:1ω6c 和11 methyl C_18:1ω7c,主要极性脂为磷脂酰胆碱、磷脂酰甘油、双磷脂酰甘油、一个未知的氨基脂和两个未知脂。基因组G+C 含量为61.3 mol%。基于16S rRNA 基因的系统发育结果显示,菌株NH195^T 隶属于速生杆菌属;其与速生杆菌属标准菌株的16S rRNA 基因相似性范围为94.4%-97.7%。菌株NH195^T 与速生杆菌属标准菌株C. halophilus ZXM137^T 和C. indicus P73^T 的平均核苷酸一致性(ANI)分别为78.6%和78.0%;基于基因组数据计算所得的DNA 杂交同源率分别为26.1%和23.0%。【结论】基于表型和基因型结果,菌株NH195^T 代表了速生杆菌属一个新物种,命名为Celeribacter ethanolicus,标准菌株为NH195^T (CGMCC 1.15406^T=JCM 31095^T)。     

口蹄疫病毒O型中和抗体检测固相阻断ELISA方法的建立

【目的】为评价O型口蹄疫病毒(foot-and-mouth disease virus,FMDV)灭活疫苗免疫后中和抗体(neutralizing antibodies,NA)水平,建立检测中和抗体的固相阻断ELISA (neutralizing antibodies solid-phase blocking ELISA,NA-SPBE)方法。【方法】本研究以本实验室前期制备的FMDV广谱反应性牛源单克隆抗体E32作为捕获抗体,以生物素标记的FMDV O型型内广谱中和牛源单克隆抗体C4作为检测抗体,经过条件优化建立了检测FMDV O型中和抗体的固相阻断ELISA方法,并对该方法进行了敏感性、特异性、重复性、交叉反应性与病毒中和试验(virus neutralization test,VNT)相关性等试验。【结果】抗体E32最佳包被浓度为0.5 μg/mL,O型FMDV灭活抗原最佳稀释浓度为0.25μg/mL,生物素标记抗体C4-Bio最佳工作浓度为0.06 μg/mL,链霉亲和素-HRP的最佳稀释度为1:40 000。以1.35 log₁₀作为效价判定临界值时,敏感性和特异性分别为97.14%和98.84%。利用该方法分别检测FMDV A型、FMDV Asia1型、BVDV、PRRSV、CSFV、PPRV抗体阳性血清时,均为阴性,未出现交叉反应。该方法批内和批间重复试验的变异系数均<10%,表明其重复性较好。利用该方法与VNT分别对160份血清样品进行检测,二者的相关系数r为0.807 5,P<0.000 1,相关性显著。【结论】该方法可以检测FMDV O型中和抗体,为FMDV O型灭活疫苗免疫效果评价提供有力技术支撑。     

口蹄疫病毒结构蛋白VP0抑制Ⅰ型干扰素信号通路的激活

【目的】研究口蹄疫病毒(FMDV)结构蛋白VP0对Ⅰ型干扰素信号通路的影响。【方法】通过反转录PCR构建VP0真核表达载体,利用Western blotting验证VP0蛋白转染HEK-293T细胞后的表达情况;Real-time PCR检测VP0蛋白对FMDV在BHK细胞上复制的影响,检测VP0蛋白对SeV诱导的干扰素信号通路分子RIG-I、IRF3、IFN-β及下游刺激基因ISG15、ISG20表达的影响;双荧光素酶报告基因检测系统检测VP0蛋白对SeV诱导的IFN-β和NF-κB启动子激活以及对RIG-I样受体(RIG-I-like receptors,RLRs)信号通路分子激活IFN启动子的影响;免疫共沉淀检测VP0蛋白与RLRs信号通路中关键分子的相互作用。【结果】成功构建了p CAGGs-VP0真核表达载体,可以在HEK-293T细胞中表达;FMDV感染后的4–6 h,VP0蛋白显著促进FMDV在BHK细胞上的复制(P0.01或P0.05);VP0蛋白明显抑制干扰素下游刺激基因的表达(P0.01或P0.05)。在双荧光素酶报告基因检测实验中,VP0蛋白抑制SeV诱导IFN-β和NF-κB的活化具有剂量依赖性(P0.01),并对RIG-I、MDA5、VISA、TBK1和IRF3介导的IFN-β产生具有抑制作用,但是对IRF7没有明显的影响。免疫共沉淀显示VP0蛋白可与IRF3发生相互作用。【结论】证实VP0蛋白可以通过与IRF3相互作用来抑制Ⅰ型干扰素信号通路的激活。     

牛支原体LRR5蛋白原核表达及其在牛支原体入侵宿主细胞过程中的作用分析

致病性支原体具有入侵宿主细胞的能力,这是其发挥致病作用的关键。介导支原体入侵宿主细胞的自身功能蛋白可能是一种潜在的药物或疫苗靶标。【目的】克隆表达牛支原体(Mycoplasmabovis) MBOVPG45_0564基因编码蛋白(命名为LRR5蛋白),并探究其在M. bovis入侵宿主细胞过程中的作用。【方法】利用NCBI数据库对MBOVPG45_0564基因进行同源性分析,用Discovery Studio Client系统对LRR5蛋白进行蛋白结构预测;原核表达LRR5蛋白并制备其小鼠多克隆抗体,利用免疫电镜对LRR5蛋白进行亚细胞定位;通过平板计数、激光共聚焦显微镜观察LRR5抗体封闭后M. bovis对胎牛肺(embryonic bovine lung, EBL)细胞入侵率的变化;将LRR5蛋白偶联至荧光微球表面后,以激光共聚焦显微镜及高内涵活细胞成像系统观察微球进入EBL细胞情况。【结果】MBOVPG45_0564基因在牛支原体属中为保守基因,其编码蛋白LRR5为膜相关蛋白,空间构象呈典型的月牙状,多个重复的亮氨酸基序以超螺旋方式组装并形成螺线管蛋白质结构单元。LRR5抗体封闭后,M. bovis对EBL细胞的入侵率显著降低(P<0.05),荧光微球偶联LRR5蛋白后,荧光微球可成功进入EBL细胞。【结论】MBOVPG45_0564基因编码的LRR5蛋白定位在M. bovis膜上,在M. bovis入侵宿主细胞过程中发挥着重要作用。     

橡胶树暹罗炭疽菌Zn2Cys6型转录因子CsGcc1的生物学功能

【背景】暹罗炭疽菌（Colletotrichum siamense）是一种重要的病原真菌,可以引起炭疽病,给全球橡胶产业带来巨大的经济损失。Zn₂Cys₆型转录因子是真菌特有的锌指类转录因子,通常参与调控真菌的生长发育过程。【目的】在暹罗炭疽菌中鉴定了一个与稻瘟病菌Gcc1同源的Zn₂Cys₆型转录因子CsGcc1,并研究其功能。【方法】根据同源重组原理构建CsGCC1的基因敲除突变体,并通过营养生长、H₂O₂敏感性、分生孢子产生及萌发、玻璃纸试验和致病性分析,明确CsGcc1的功能。【结果】CsGcc1编码一个含有646个氨基酸的蛋白,而且含有一个GAL4结构域。CsGCC1基因在培养36 h的菌丝及分生孢子中具有较高的表达量。CsGCC1基因敲除突变株营养生长速率降低且对H₂O₂更加敏感。相较于野生型菌株,突变株的分生孢子产量、萌发率及附着胞形成率均降低。此外,CsGCC1的敲除可以明显降低分生孢子的穿透能力,突变株对橡胶叶片的致病力减弱。【结论】Zn₂Cys₆型转录因子CsGcc1参与调控暹罗炭疽菌的营养生长、氧化应激、分生孢子发育及致病性等过程。     

What is the usual internal carbon dioxide concentration in C<Subscript>4</Subscript> species under midday field conditions?

The carbon dioxide concentrating system in C₄ photosynthesis allows high net photosynthetic rates (P _N) at low internal carbon dioxide concentrations (C _i), permitting higher P _N relative to stomatal conductance (g _s) than in C₃ plants. This relation would be reflected in the ratio of C _i to external ambient (C _a) carbon dioxide concentration, which is often given as 0.3 or 0.4 for C₄ plants. For a C _a of 360 μmol mol⁻¹ that would mean a C _i about 110–140 μmol mol⁻¹. Our field observations made near midday on three weedy C₄ species, Amaranthus retroflexus, Echinochloa crus-galli, and Setaria faberi, and the C₄ crop Sorghum bicolor indicated mean values of C _i of 183–212 μ mol mol⁻¹ at C _a = 360 μmol mol⁻¹. Measurements in two other C₄ crop species grown with three levels of N fertilizer indicated that while midday values of C _i at high photon flux were higher at limiting N, even at high nitrogen C _i averaged 212 and 196 μmol mol⁻¹ for Amaranthus hypochondriacus and Zea mays, respectively. In these two crops midday C _i decreased with increasing leaf to air water vapor pressure difference. Averaged over all measurement days, the mean C _i across all C₄ species was 198 μmol mol⁻¹, for a C _i/C _a ratio of 0.55. Prior measurements on four herbaceous C₃ species using the same instrument indicated an average C _i/C _a ratio of 0.69. Hence midday C _i values in C ₄ species under field conditions may often be considerably higher and more similar to those of C₃ species than expected from measurements made on plants in controlled environments. Reducing g _s in C₄ crops at low water vapor pressure differences could potentially improve their water use efficiency without decreasing P _N.     

Structure and expression of a hybrid proline-rich protein gene in the solanaceous species,Solanum brevidens, Solanum tuberosum, andLycopersicum esculentum

The full-length cDNA of a previously identified Solanum brevidens gene was isolated and characterised. DNA sequence analysis revealed an open reading frame that encodes a hybrid proline-rich cell wall protein of 407 amino acids. The putative protein was designated SbrPRP. The SbrPRP harbours three parts, an N-terminal signal peptide followed by a repetitive proline-rich domain and a cysteine-rich C-terminus resembling non-specific lipid-transfer proteins. The repetitive proline-rich domain contains two repeated motifs, PPHVKPPSTPK and PTPPIVSPP extended with TPKYP and TPKPPS motifs, respectively, at their N- or C-terminal. The SbrPRP gene of the non-tuberising Solanum species, Solanum brevidens, possesses highly homologous counterparts in the tuberising species, Solanum tuberosum (StPRP) and in the related species, Lycopersicum esculentum (TFM7). All three genes are present in single- or low copy number in the corresponding genome. Organ-specific expression of the genes, however, is different in the three solanaceous species.     

Expression and purification of Listeria innocua Sv6b p60 invasion associated protein

The p60 protein of Listeria is a major extra-cellular protein which is used as indicator for the detection of these bacteria from contaminated food samples. To produce p60 in Escherichia coli, the invasion associated protein (iap) gene of L. innocua Sv6b encoding p60 was cloned and over-expressed with expression vector pMAL-C2. Recombinant pMBP-iap/innocua was induced with IPTG in E. coli. The expressed recombinant p60 protein that was fused with a maltose-binding protein (MBP) was purified by amylose resin-based affinity chromatography. The purified recombinant p60 protein was also detected as denatured and neutralized form by using a specific p60 monoclonal antibody against L. monocytogenes and it may be useful for the production of L. innocua-specific antibody.     

无细胞系统原位制备蛋白质芯片及其应用

主要介绍了目前在生物芯片表面进行蛋白质无细胞表达与定向制备蛋白质芯片的研究进展,包括各种基因植入芯片的方法、蛋白质体外不同表达的途径、蛋白质固定的策略以及可能的应用发展前景等．蛋白质芯片以其高通量、高灵敏和检测迅速等优点正成为蛋白质组学研究中的重要工具之一．蛋白质的高效表达与纯化、蛋白质在芯片表面的有效固定与蛋白质活性的保持等内容是蛋白质芯片技术发展的关键．采用纳米生物技术与无细胞表达系统,已经可以在生物芯片表面通过植入基因的方式制备相关的蛋白质芯片,从而为蛋白质芯片的原位制备开辟了新的方向．     

米曲霉异源蛋白表达系统研究进展及展望

米曲霉作为一种重要的工业微生物,在异源蛋白表达方面已有广泛应用,受限于被表达蛋白的修饰及分泌过程,目前实际生产使用的基因供体主要局限于其他真菌,尤其是丝状真菌。当外源基因来源于植物、昆虫和哺乳动物时,米曲霉所生产的异源蛋白产量及生物活性往往不尽如人意。本文综述了米曲霉作为宿主表达异源蛋白的研究进展,包括其现有的遗传操作手段及异源表达方面的应用及探索,重点介绍了应用过程中面临的挑战和解决策略,另外,对米曲霉表达异源蛋白的应用前景及发展方向进行了展望。     

Expression of the Neisseria gonorrhoeae major outer membrane protein PI in Escherichia coli

Summary To actively express an outer membrane protein, protein I (PI), from different strains of Neisseria gonorrhoeae in E.␣coli, PI gene fragments from two reference strains and four clinical isolates of Neisseria gonorrhoeae were obtained with PCR amplification. They were cloned into the PCR cloning vector pBS-T to form pBS-T-PI and sequenced. Subsequently, they were cloned into an expression vector pET-30b (+) to generate pET-PI recombinants. After inducing with isopropyl-β-d-thiogalactopyranoside (IPTG), the expressed PI proteins were analysed by SDS-PAGE, Western blotting and ELISA. The results implied that we had successfully constructed the PI gene recombinants from both reference strains and clinical isolates and obtained the recombinant proteins expressed in E. coli at relatively high levels, and the expressed proteins had the immunological activity with the corresponding antibodies. This research will be very helpful for the further study of these proteins in generating preventive vaccines on Neisseria gonorrhoeae infection and clinical diagnosis.     

Mass-spectrometric Identification of Binding Proteins of <Emphasis Type="BoldItalic">M</Emphasis><Subscript>r</Subscript> 25,000 Protein,a Part of Vitellogenin B1, Detected in Particulate Fraction of <Emphasis Type="Italic">Xenopus laevis</Emphasis> Oocytes

A phosphorylated protein with molecular mass of 25,000 (pp25) is a component of Xenopus laevis vitellogenin B1. Our previous report showed the existence of several binding proteins of pp25 in the particulate fraction of Xenopus oocytes. In an attempt to elucidate the function of pp25, two of these binding proteins were purified, analyzed by mass-spectrometry, and identified as ribosomal proteins S13 and S14. Other binding proteins in the particulate fraction mostly corresponded to those derived from purified 40S and 60S ribosomal subunits, as shown by the overlay assay method. However, pp25 did not show any effect on protein synthesis in the rabbit reticulocyte lysate system. A model in which pp25 connects a type of serpin (serine protease inhibitor), the only pp25-binding protein detected in the cytoplasm, to the endoplasmic reticulum through two serine clusters is proposed to explain a possible function of this protein.     

Isolation of a cDNA encoding a novel GTP-binding protein of Arabidopsis thaliana

A cDNA encoding for a 68 kDa GTP-binding protein was isolated from Arabidopsis thaliana (aG68). This clone is a member of a gene family that codes for a class of large GTP-binding proteins. This includes the mammalian dynamin, yeast Vps1p and the vertebrate Mx proteins. The predicted amino acid sequence was found to have high sequence conservation in the N-terminal GTP-binding domain sharing 54% identity to yeast Vps1p, 56% amino acid identity to rat dynamin and 38% identity to the murine Mx1 protein. The northern analysis shows expression in root, leaf, stem and flower tissues, but in mature leaves at lower levels. Southern analysis indicates that it may be a member of a small gene family or the gene may contain an intron.     

Structure,function, and biogenesis of SecY,an integral membrane protein involved in protein export

TheE. coli secY (prlA) gene, located in the operator-distal part of thespec ribosomal protein operon, codes for an integral membrane protein, SecY. The phenotypes of temperature-sensitive and cold-sensitive mutations insecY suggest that the SecY protein plays an essential rolein vivo to facilitate protein translocation, whereas theprlA mutations in this gene suggest that SecY may interact with the signal sequence of translocating polypeptides. SecY contains most probably six cytoplasmic and five periplasmic domains, as well as 10 transmembrane segments. Such membrane-embedded structure may confer the SecY protein a translocator function, in which it provides a proteinaceous pathway for passage of secreted as well as membrane proteins. Results obtained byin vitro analyses of the translocation reactions, as well as some new phenotypes of thesecY mutants, are consistent with this notion. Possible interaction of SecY with other secretion and chaperone-like factors is also discussed.