狗獾粪便DNA提取方法的初步探讨

在京杭大运河扬州段堤坝上采集狗獾的新鲜粪便,采用预处理-酚/氯仿抽提法、NaCl改良法、异硫氰酸胍裂解法、淀粉吸附法及QIAamp试剂盒法5种方法对粪便样品中狗獾DNA进行提取,探讨狗獾粪便样品中DNA提取方法和优化条件。结果表明,在5种提取方法中,淀粉吸附法的效果明显优于其它4种方法。采用粪便裂解液快速裂解细胞后,加入淀粉去除其中的大量PCR抑制物,然后用蛋白酶K裂解、酚/氯仿/异戊醇抽提,最后使用UNIQ-10柱纯化粪便DNA,对线粒体控制区和微卫星位点的PCR扩增反应及测序结果证实该方法的可行性。以上结果表明,通过该方法获得的粪便DNA能够用于更深入的分子遗传学等学科的研究。     

Net costs of group living in a solitary forager, the Eurasian badger (Meles meles)

Group living is expected to evolve under two extreme conditions:when there are net benefits to the individual of living in agroup and when there are net costs to living in a group togetherwith strong ecological constraints on dispersal and independentbreeding. A third condition may facilitate group formation:when the territorial defense of resources that are dispersedwidely or renewed at high rates allows groups to form at nocost to group members. Eurasian badgers are solitary over alarge part of their geographic distribution and forage aloneeven where diey live in territorial groups. To determine whichof the three conditions best explains group living in badgers,we analyzed dispersal and breeding patterns. Using these datawe describe the mechanism of group formation and the net costsor benefits of group living in 16 badger groups in one population.Groups form primarily by the retention of young on their natalterritory. Typically, groups contain one or more sexually maturebut nonbreeding females in addition to one or more breedingfemales. Females do not benefit from group living as indicatedby the lack of relationships, or perhaps negative relationships,between the proportion of adult females that bred in a groupand mean reproductive success, on the one hand, and group sizeand components of group size, on the other. A high reproductivefailure rate among females in this and other populations ofsocial badgers, as compared with a population of solitary badgers,suggests that there is a cost of group living to females. Wepropose that if badgers defend resources whose spatial distributionor high renewal rates allow groups to form on a territory atlitde or no cost to group members, weak ecological constraintson dispersal and independent breeding are sufficient to explainthe formation of groups. Badgers appear to have not evolvedcooperative breeding in response to these ecological conditions,perhaps because badger groups represent an early stage in theevolution of carnivore sociality.     

Lunar-related reproductive behaviour in the badger (Meles meles)

Cyclicity in behaviours, including reproduction, in relation to the lunar cycle is widely documented in some phyla, but weak or unknown in Class Mammalia. In this paper we present long-term video surveillance data of wild Eurasian badgers Meles meles, which reveal a strong correlation between reproductive behaviour and the lunar cycle. Squat marking and raised-leg urination, which increase in frequency at times of reproductive activity, showed maxima around day 22 of the lunar cycle (i.e. new moon). These findings were supported by observations of matings, together with published records, which showed significantly higher occurrence in the lunar dark phase (last quarter to first quarter). We propose that the lunar cycle has the potential to act as a regulator of the reproductive cycle in the badger.     

The role of setts in badger (Meles meles) group size, breeding success and status of TB (Mycobacterium bovis)

This paper examines the relationship between the number of occupied setts in a badger social group territory and badger group size, breeding success, and status of infection with Mycobacterium bovis (TB). The data used were from a long-term epidemiological and ecological study of a high-density population of badgers Meles meles in south-west England. The number of occupied setts in a social group was significantly and positively related to the number of badgers caught in the social group, so that as a social group increases in size, badgers occupy more of the available setts. This relationship remained significant when numbers of adults, adult males and adult females were examined. The number of breeding females, number of cubs and sex ratio was not related to the number of occupied setts in a social group. It is possible that the advantages to breeding females of a larger number of setts available to breed in might be outweighed by the increased aggression found in larger groups. The TB score for prevalence and for incidence of social groups was significantly and positively related to the number of occupied setts in a social group, such that the more occupied setts there were in a territory, the higher the TB index of the group. Possibly the setts themselves contribute to the persistence of TB within social groups, or badgers infected with TB might show a difference in behaviour from uninfected badgers resulting in their increased use of outlying setts.     

Isolation of 39 polymorphic microsatellite loci and the development of a fluorescently labelled marker set for the Eurasian badger (Meles meles) (Carnivora: Mustelidae)

We have isolated 78 microsatellite loci from the Eurasian badger (Meles meles). Of the 52 loci characterized, 39 were found to be polymorphic. A fluorescently labelled primer set was developed to enable individual‐specific 17‐locus genotypes to be obtained efficiently.     

京杭运河邵伯高邮段栖息地破碎化对狗獾种群数量分布的影响

栖息地破碎是生物多样性下降的主要原因之一。栖息地破碎引起的面积效应、隔离效应和边缘效应能影响动物种群的绝灭阈值、分布、多度、种间关系以及生态系统过程, 最终影响动物种群的数量分布。2006年10-11月和2007年10-11月, 利用全球定位系统(GPS)、地理信息系统(GIS)和样方法定量分析京杭运河邵伯至高邮段狗獾栖息地破碎化程度, 确定不同斑块的面积、斑块距离、斑块隔离度以及栖息地质量对斑块中狗獾数量分布的影响。结果表明, 各个斑块内狗獾的洞口数、粪堆数与该斑块的面积显著的正相关(r=0.961, P=0.039; r=0.999, P=0.023), 但与斑块距离、斑块隔离度无显著的相关性(P>0.05)。栖息地的质量也会影响狗獾的数量分布, 多元线性逐步回归分析表明, 人类干扰和与栖息地的郁闭性显著的影响狗獾的数量分布。以上结果说明, 京杭运河邵伯高邮段栖息地的破碎化程度对狗獾的数量分布还没有造成显著的直接影响, 但会间接降低栖息地的质量, 进而影响狗獾的生存。     

Impact of culling on relative abundance of the European badger (Meles meles) in Ireland

The European Badger (Meles meles) has been implicated in the epidemiology of bovine tuberculosis in cattle populations in the Republic of Ireland. Badger populations have been subject to a culling regime in areas with chronic histories of bTB cattle herd breakdowns. Removal data from 2004 to 2010 were used to model the impact of culling on populations in areas under capture. Additionally, changes in field signs of badger activity were used as an index of abundance to support, or otherwise, the outcomes of the removal models. Significant reductions in standardised badger captures over time were found across three large study areas (total area, 1,355 km²). Assuming that all inactive setts were vacant, an overall linear trend model suggested that badger captures had decreased by 78 % for setts with 6 years of repeated capturing operations. Given the uncertainty associated with the relationship between sett activity and badger presence, we repeated the linear modelling using two ‘what if’ scenarios. Assuming that individual badgers were missed on 10 % or 20 % of occasions at inactive setts, the estimated decline over 6 years is lowered to 71 % or 64 %, respectively. The decline profile consisted of a steep initial decrease in captures within the first 2 years, followed by a more gradual decrease thereafter. The number of active openings at setts (burrows) declined significantly in all three areas; but the magnitude of this decline varied significantly amongst study areas (41–82 %). There was a significant increase in the probability of setts becoming dormant with time. The removal programme was more intense (mean, 0.45 badgers culled km^?2 year^?1) than previous experimental badger removals in Ireland but some captures may be attributed to immigrant badgers as no attempt was made to limit inward dispersal from areas not under management. Results from this study suggest that significant reductions in badger density occurred in the areas where management had taken place. Since other non-culled badger populations in Northern Ireland and Britain exhibited stable population trends, we attribute the reduction in relative abundance to the culling regime. Further studies of the dynamics of this reduction are required to quantify how it is counteracted by immigration from populations outside of culled areas.     

Nest position and type affect predation rates of artificial avian nests in the tropical lowland forest on Mount Cameroon

Nest predation is the leading cause of reproductive failure in birds and thus it shapes their life history strategies. Intensities of nest predation appear to differ among nest locations and types in both temperate and tropical regions. However, there is limited knowledge of factors influencing susceptibility of avian nests to predation in Africa. The aim of our study was to investigate artificial nest predation rates of different ground and shrub nests located at different heights in the rainforest undergrowth. We placed artificial avian nests within a homogeneous lowland forest interior with sparse forest undergrowth in the Mount Cameroon National Park, Cameroon. We exposed three sets of nests: 50 bare-ground, 50 cup-ground and 50 cup-shrub nests, for 10 d. Predation was higher for cup-ground nests compared to cup-shrub nests, and bare-ground nests were more depredated than cup-ground nests. We concluded that the presence of a cup as well as higher nest position significantly increased probability of artificial nest survival. The results of this study suggest a potential selection pressure on nest type and placement in lowland forest birds for a poorly known tropical region.     

Genetic structure within and among regional populations of the Eurasian badger (Meles meles) from Denmark and the Netherlands

The Eurasian badger Meles meles has a wide distribution area ranging from Japan to Ireland. In western Europe badger habitats are severely disturbed by anthropogenic factors, leading to fragmentation into subpopulations and formation of a metapopulation substructuring of once continuous panmictic populations. We have examined the genetic structure of Dutch and Danish badger populations on a relatively small scale (within countries) and a larger scale (between countries). The levels of genetic variation of populations were moderate and did not differ significantly among populations (overall H _O=0.30, overall H _E=0.34). Considerable genetic differentiation between the Dutch and Danish populations was found (overall F _ST=0.32, mean pairwise Dutch–Danish F _ST=0.42), indicating a large-scale substructuring of these western European badger populations. Further analysis showed that the Danish badger population can be substructured into three clusters [ P _{( k =3)}=0.99], but the Dutch populations cluster into one more or less panmictic population [ P _{( k =1)}=0.99] with little or no substructuring. The presence of migration barriers, such as roads, together with the peninsular geography of Denmark, may have led to this structuring of badger populations. In contrast, measures that improve migration and connection to other populations from neighboring countries may have prevented substructuring of the Dutch badger population.     

Morphological variability and developmental instability in subpopulations of the Eurasian badger (Meles meles) in Denmark

Aim Local populations from different geographical regions may differ in the selection regimes to which they are exposed. Differences in environmental factors and population density may affect the relative importance of different selective forces (e.g. natural vs. sexual selection). We suggest a direction of investigation concerned with the developmental instability of morphological traits. The goal is to disclose putative small‐scale geographical differences in the evolutionary forces, which may be hard to detect. Location Craniometrical investigations were carried out on ninety‐eight skulls and teeth of the Eurasian badger (Meles meles) collected during the period 1995–97 from three different populations in Denmark. One of these thrives at low population density, whereas the two others are characterized by high local density. Methods The skulls were investigated for developmental instability (DI) using fluctuating asymmetry (FA) as its estimator. FA was measured on canines, molars, premolar teeth and other skull and mandible traits. For the statistical analyses, we applied nonparametric permutation tests. Results Evidence was found suggesting differentiation among populations in mean degree of FA, and the FA values measured on canines were higher in the high‐density populations. FA of the canines was significantly higher in males than females, in contrast to FA of the other traits. Evidence of a negative relationship between canine size and their FA was found, whereas no significant correlations were found between the molar and premolar teeth measures and their FA. Main conclusions Our results suggest that canines could be under directional selection stemming from intrasexual competition, which may be stronger in high‐density zones. The other teeth investigated seem to be under a stabilizing regime hence their FA is mainly affected by environmental stresses. The negative relationship between canine size and FA found in males suggests the capacity of badgers to respond in an evolutionary way to environmental changes, despite the low genetic variability previously found at the molecular level.     

The ‘omnivorous badger dilemma’: towards an integration of nutrition with the dietary niche in wild mammals

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