Differentiating between Steller sea lion (Eumetopias jubatus) and northern fur seal (Callorhinus ursinus) scats through analysis of faecal DNA

We describe a method to determine the species of pinniped from faeces collected from sympatric Steller sea lion (Eumetopias jubatus) and northern fur seal (Callorhinus ursinus) rookeries using newly developed species-specific primers that amplify a 667-669-base pair segment from the mitochondrial DNA (mtDNA) cytochrome B (cytB) gene region. The primers yielded the correct species in 100% of tissue samples from 10 known animals and 100% of faecal samples from 13 known animals. Species could be identified unequivocally for 87.7% of faecal samples from 122 unknown individuals. The ability to differentiate between scats of sympatrically breeding Steller sea lions and northern fur seals will contribute to the range-wide knowledge of the foraging strategies of both species as well as allow researchers to examine the niche partitioning and potential resource competition between the two predators.     

Phylogeography of lions (Panthera leo ssp.) reveals three distinct taxa and a late Pleistocene reduction in genetic diversity

Lions were the most widespread carnivores in the late Pleistocene, ranging from southern Africa to the southern USA, but little is known about the evolutionary relationships among these Pleistocene populations or the dynamics that led to their extinction. Using ancient DNA techniques, we obtained mitochondrial sequences from 52 individuals sampled across the present and former range of lions. Phylogenetic analysis revealed three distinct clusters: (i) modern lions, Panthera leo ; (ii) extinct Pleistocene cave lions, which formed a homogeneous population extending from Europe across Beringia (Siberia, Alaska and western Canada); and (iii) extinct American lions, which formed a separate population south of the Pleistocene ice sheets. The American lion appears to have become genetically isolated around 340 000 years ago, despite the apparent lack of significant barriers to gene flow with Beringian populations through much of the late Pleistocene. We found potential evidence of a severe population bottleneck in the cave lion during the previous interstadial, sometime after 48 000 years, adding to evidence from bison, mammoths, horses and brown bears that megafaunal populations underwent major genetic alterations throughout the last interstadial, potentially presaging the processes involved in the subsequent end-Pleistocene mass extinctions.     

自然哺乳长颈鹿的幼仔行为研究

对成都动物园2005年和2008年出生长颈鹿幼仔在母兽哺乳情况下的1月龄内幼仔行为进行了观察和分析.发现幼长颈鹿的主要行为有卧、走、站、吃奶、跑等,其中卧和站的行为分别占全天时间的61.7%和32.3%;幼长颈鹿在10 d左右开始学习采食青草,4周龄时明显能吃到一些青草.     

Fire induced changes in the foraging behaviour of impala Aepyceros melampus in Lake Mburo National Park, Uganda

The impact of fire on the foraging behaviour of impala (Aepyceros melampus), was studied in the Lake Mburo National Park, Uganda. Two indices of foraging efficiency were used to establish differences in feeding behaviour in burnt and unburnt control areas. These are acceptable grass/browse abundance (AGA/ABA), expressed in terms of feeding time achieved per 50 steps and food ingestion rate (FIR), expressed as the cumulative percentage. Accumulation of above ground grass biomass was also measured in burnt and control areas. After burning, the grazing efficiency remains constant throughout the dry season, while the browsing time achieved per 50 steps decreases drastically. In the control areas AGA decreased with increasing length of the dry season while ABA increased. When expressed in terms of cumulative percentage (FIR), the results show a significant increase of 31% in foraging time spent grazing and a 24% decrease in foraging time spent browsing, in burnt areas. The results confirm the classification of impalas as intermediate or mixed feeders with a distinct preference for grass. Impala foraging patterns after burning are discussed and compared with investigations on the effect of burning on the behaviour of impalas and Buffon's kob (Kobus kob kob) in other areas of Africa.     

不同保存条件下茧蜂标本基因组DNA的降解

探讨了不同保存条件下高温、氧化、化学修饰等对茧蜂标本基因组DNA降解的影响,提出用含50 mmol.L-1乙二胺四乙酸的无水乙醇保存室内寄生蜂标本,并在液面覆盖石蜡油等可行性建议。     

Reproductive studies of the Oryx

The genus Oryx comprises one species already extinct in the wild and others that are rapidly disappearing. It is important to understand the reproductive physiology of these species in order to ensure their successful captive propagation. It was determined behaviorally and hormonally that the scimitar-horned oryx's 21–22 d estrous cycle very closely resembled that of the domestic cow. Four females of three species (Arabian, scimitar-horned, and fringe-eared oryx) were treated with prostaglandin (PG) and pregnant mares serum gonadotropin (PMSG) or follicle-stimulating hormone (FSH). All animals responded to prostaglandin treatment with shortened cycles and behavioral estrus. Ovulation occurred in all females but only one responded to gonadotrophin treatment with a mild superovulation. An embryo recovered from an Arabian oryx was frozen in liquid nitrogen for 6 months. Upon thawing, the normal-appearing morula was surgically transferred to a scimitar-horned oryx. The recipient failed to carry the embryo and returned to estrus within three weeks of the transfer. It was demonstrated that induction of ovulation and synchronization of estrus can be achieved in the three Oryx species with PMSG or FSH combined with prostaglandin treatment.     

Characterization of nine microsatellite loci in impala (Aepyceros melampus)

Nine microsatellite loci were isolated from a genomic DNA library created from impala (Aepyceros melampus). Observed and expected levels of heterozygosity were computed utilizing 25 individuals from a population in central Kenya. Tests for Hardy–Weinberg equilibria were conducted and found that three of the nine loci deviated from equilibrium in this population. These markers were developed to analyse the genetic effects of culling and isolation on a game preserve in Kenya.     

Feeding ecology and foraging behaviour of impala Aepyceros melampus in Lake Mburo National Park, Uganda

Intersexual and seasonal variation in foraging behaviour of impala (Aepyceros melampus), was studied in the Lake Mburo National Park, Uganda. There was a moderate seasonal difference in foraging efficiency (as measured by ‘acceptable food abundance’), with a minimum in dry season and a maximum in Rainy season. The variation between sexes was more distinct with a pronounced minimum in time spent browsing of males in early wet season. By distinguishing between feeding time spent grazing and feeding time spent browsing the seasonal variation was confirmed. The proportion of foraging time spent feeding (expressed as ‘food ingestion rate’) showed an inverse pattern with a maximum in the late dry season (75.5%), decreasing values throughout the Rainy season and a minimum in early dry season (57.8%). Differences between sexes were explained in terms of reproductive demands and seasonal balance in terms of moderate climate throughout the year. Impala foraging patterns in the bimodal tropics (two Rainy seasons) is discussed and compared with unimodal tropics. The findings are matched against current ideas on optimal foraging.     

Quantitative analysis of prey DNA in pinniped faeces: potential to estimate diet composition?

We investigate using relative amounts of prey DNA recovered from pinniped faeces to obtain diet composition data. Faeces were obtained from captive sea lions being fed a diet containing three fish species (50%, 36% and 14% by mass). Real-time PCR was used to quantify mtDNA in undigested tissue and in the faecal samples. The percent composition of fish mtDNA extracted from tissue corresponded reasonably well to the mass of fish in the mixture. In faecal samples the absolute amount of fish mtDNA recovered varied 100-fold, but the percent composition of the samples was relatively consistent (57.5 ± 9.3%, 19.3 ± 6.6% and 23.2 ± 12.2%). These results indicate there are prey-specific biases in DNA survival during digestion. However, the biases may be less than those commonly observed in conventional diet studies.     

Which specimens from a museum collection will yield DNA barcodes? A time series study of spiders in alcohol

We report initial results from an ongoing effort to build a library of DNA barcode sequences for Dutch spiders and investigate the utility of museum collections as a source of specimens for barcoding spiders. Source material for the library comes from a combination of specimens freshly collected in the field specifically for this project and museum specimens collected in the past. For the museum specimens, we focus on 31 species that have been frequently collected over the past several decades. A series of progressively older specimens representing these 31 species were selected for DNA barcoding. Based on the pattern of sequencing successes and failures, we find that smaller-bodied species expire before larger-bodied species as tissue sources for single-PCR standard DNA barcoding. Body size and age of oldest successful DNA barcode are significantly correlated after factoring out phylogenetic effects using independent contrasts analysis. We found some evidence that extracted DNA concentration is correlated with body size and inversely correlated with time since collection, but these relationships are neither strong nor consistent. DNA was extracted from all specimens using standard destructive techniques involving the removal and grinding of tissue. A subset of specimens was selected to evaluate nondestructive extraction. Nondestructive extractions significantly extended the DNA barcoding shelf life of museum specimens, especially small-bodied species, and yielded higher DNA concentrations compared to destructive extractions. All primary data are publically available through a Dryad archive and the Barcode of Life database.