Effects of oil palm plantations on habitat structure and fish assemblages in Amazon streams

The aim of this research is to assess the effects of oil palm plantations on stream habitat and their fish assemblage diversity. We hypothesize that streams which drain through oil palm plantations tend to be less heterogeneous, limiting the occurrence of many species, than streams that drain through forest fragments, which support higher fish diversity. A total of 17 streams were sampled; eight in forest fragments and nine in oil palm plantations. Environmental and biological variables were sampled along 150 m stretch in each stream. Of the 242 environmental variables measured, ten were considered important to assess the condition of structural habitat, and out of these variables, four were considered relevant in the distinction between streams in oil palm plantations and forest fragments. A total of 7245 fishes were collected, belonging to 63 species. Unlike our original hypothesis, the species richness did not differ between forest fragment and oil palm plantations streams, showing that it is not a good divert measure in streams disturbance assessment. However, fish assemblages differed in species composition, and 56 species were recorded in oil palm plantation streams, while 44 species were recorded in forest fragments streams. Some species were identified as indicators of either altered (Aequidens tetramerus and Apistogramma agassizii) or undisturbed areas (Helogenes marmoratus). Overall, oil palm plantations were proven to change stream habitat structure and fish species distribution, corroborating other studies that have evidenced changes in patterns of biological community structure due to impacts by different land uses.     

Species richness and structure of three Neotropical bat assemblages

We compared the assemblages of phyllostomid bats in three Neotropical rainforests with respect to species richness and assemblage structure and suggested a method to validate estimates of species richness for Neotropical bat assemblages based on mist-netting data. The fully inventoried bat assemblage at La Selva Biological Station (LS, 100 m elevation) in Costa Rica was used as a reference site to evaluate seven estimators of species richness. The Jackknife 2 method agreed best with the known bat species richness and thus was used to extrapolate species richness for an Amazonian bat assemblage (Tiputini Biodiversity Station; TBS, 200 m elevation) and an Andean premontane bat assemblage (Podocarpus National Park; BOM, 1000 m elevation) in Ecuador. Our results suggest that more than 100 bat species occur sympatrically at TBS and about 50 bat species coexist at BOM. TBS harbours one of the most species-rich bat assemblages known, including a highly diverse phyllostomid assemblage. Furthermore, we related assemblage structure to large-scale geographical patterns in floral diversity obtained from botanical literature. Assemblage structure of these three phyllostomid assemblages was influenced by differences in floral diversity at the three sites. At the Andean site, where understorey shrubs and epiphytes exhibit the highest diversity, the phyllostomid assemblage is mainly composed of understorey frugivores and nectarivorous species. By contrast, canopy frugivores are most abundant at the Amazonian site, coinciding with the high abundance of canopy fruiting trees. Assemblage patterns of other taxonomic groups also may reflect the geographical distribution patterns of floral elements in the Andean and Amazonian regions.  © 2008 The Linnean Society of London, Biological Journal of the Linnean Society , 2008, 94 , 617–629.     

SSR mining in oil palm EST database: application in oil palm germplasm diversity studies

This study reports on the detection of additional expressed sequence tags (EST) derived simple sequence repeat (SSR) markers for the oil palm. A large collection of 19243 Elaeis guineensis ESTs were assembled to give 10258 unique sequences, of which 629 ESTs were found to contain 722 SSRs with a variety of motifs. Dinucleotide repeats formed the largest group (45.6%) consisting of 66.9% AG/CT, 21.9% AT/AT, 10.9% AC/GT and 0.3% CG/CG motifs. This was followed by trinucleotide repeats, which is the second most abundant repeat types (34.5%) consisting of AAG/CTT (23.3%), AGG/CCT (13.7%), CCG/CGG (11.2%), AAT/ATT (10.8%), AGC/GCT (10.0%), ACT/AGT (8.8%), ACG/CGT (7.6%), ACC/GGT (7.2%), AAC/GTT (3.6%) and AGT/ACT (3.6%) motifs. Primer pairs were designed for 405 unique EST-SSRs and 15 of these were used to genotype 105 E. guineensis and 30 E. oleifera accessions. Fourteen SSRs were polymorphic in at least one germplasm revealing a total of 101 alleles. The high percentage (78.0%) of alleles found to be specific for either E. guineensis or E. oleifera has increased the power for discriminating the two species. The estimates of genetic differentiation detected by EST-SSRs were compared to those reported previously. The transferability across palm taxa to two Cocos nucifera and six exotic palms is also presented. The polymerase chain reaction (PCR) products of three primer-pairs detected in E. guineensis, E. oleifera, C. nucifera and Jessinia bataua were cloned and sequenced. Sequence alignments showed mutations within the SSR site and the flanking regions. Phenetic analysis based on the sequence data revealed that C. nucifera is closer to oil palm compared to J. bataua; consistent with the taxanomic classification.     

Cumulative ecological effects of a Neotropical reservoir cascade across multiple assemblages

Kettle holes are often abundant within agriculturally used moraine landscapes. They are highly enriched with nutrients and considered hotspots of carbon turnover. However, data on their primary productivity remain rare. We analysed two kettle holes typical to Germany with common aquatic plant communities during one year. We hypothesised that gross primary production (GPP) rates would be high compared to other temperate freshwater ecosystems, leading to high sediment deposition. Summer GPP rates (4.5–5.1 g C m^?2 day^?1) were higher than those of most temperate freshwater systems, but GPP rates were reduced by 90% in winter. Macrophytes dominated GPP from May to September with emergent macrophytes accounting for half of the GPP. Periphyton contributed to most of the system GPP throughout the rest of the year. Sediment deposition rates were high and correlated with GPP in one kettle hole. In contrast, due to prolonged periods of anoxia, aerobic sediment mineralisation was low while sediment phosphorus release was significant. Our results suggest that kettle holes have a high potential for carbon burial, provided they do not fully dry up during warm years. Due to their unique features, they should not be automatically grouped with ponds and shallow lakes in global carbon budget estimates.     

Wavelet neural networks applied to pulping of oil palm fronds

In the organosolv pulping of the oil palm fronds, the influence of the operational variables of the pulping reactor (viz. cooking temperature and time, ethanol and NaOH concentration) on the properties of the resulting pulp (yield and kappa number) and paper sheets (tensile index and tear index) was investigated using a wavelet neural network model. The experimental results with error less than 0.0965 (in terms of MSE) were produced, and were then compared with those obtained from the response surface methodology. Performance assessment indicated that the neural network model possessed superior predictive ability than the polynomial model, since a very close agreement between the experimental and the predicted values was obtained.     

Catalytic processes towards the production of biofuels in a palm oil and oil palm biomass-based biorefinery

In Malaysia, there has been interest in the utilization of palm oil and oil palm biomass for the production of environmental friendly biofuels. A biorefinery based on palm oil and oil palm biomass for the production of biofuels has been proposed. The catalytic technology plays major role in the different processing stages in a biorefinery for the production of liquid as well as gaseous biofuels. There are number of challenges to find suitable catalytic technology to be used in a typical biorefinery. These challenges include (1) economic barriers, (2) catalysts that facilitate highly selective conversion of substrate to desired products and (3) the issues related to design, operation and control of catalytic reactor. Therefore, the catalytic technology is one of the critical factors that control the successful operation of biorefinery. There are number of catalytic processes in a biorefinery which convert the renewable feedstocks into the desired biofuels. These include biodiesel production from palm oil, catalytic cracking of palm oil for the production of biofuels, the production of hydrogen as well as syngas from biomass gasification, Fischer-Tropsch synthesis (FTS) for the conversion of syngas into liquid fuels and upgrading of liquid/gas fuels obtained from liquefaction/pyrolysis of biomass. The selection of catalysts for these processes is essential in determining the product distribution (olefins, paraffins and oxygenated products). The integration of catalytic technology with compatible separation processes is a key challenge for biorefinery operation from the economic point of view. This paper focuses on different types of catalysts and their role in the catalytic processes for the production of biofuels in a typical palm oil and oil palm biomass-based biorefinery.     

Seasonal response of fish assemblages to habitat fragmentation caused by an impoundment in a Neotropical river

Changes in fish assemblages between the zones above and below Funil dam in Southeastern Brazil were investigated to evaluate the possible impacts of this impoundment in two contrasting seasons: summer/wet and winter/dry. We expect differences in fish assemblage structure and in environmental conditions between seasons and between the reservoir and the zone downriver of the dam. A total of 3,579 individuals comprising 38 species, including six non-natives, were collected. As expected, the comparatively high habitat complexity and water flow regime of the downriver zone favored a richer and more abundant fish assemblage compared with the reservoir, especially in the wet season. In this period, water covers part of the riparian vegetation, increasing habitat availability and nutrient input. Additionally, the dam prevents upriver migration of rheophilics fish species such as the Characiformes Prochilodus lineatus and Leporinus copelandii, and the Siluriformes Pimelodus fur and Pimelodus maculatus, thus increasing shoals below the dam. Although the reservoir represents a simplified ecosystem highly influenced by non-native top predator species (e.g. the Perciformes Cichla kelberi and Plagioscion squamosissimus), seasonal processes (e.g. water level fluctuations and flood pulses) seem to play a role in structuring of the fish assemblage. Environmental variables, mainly turbidity, temperature, and conductivity were significantly associated to spatial-temporal patterns of fish assemblage. In this freshwater tropical reservoir, the spatial scale, rather than the seasonal changes in environmental variables, was the dominant factor structuring fish assemblage in the reservoir and in the zone downriver of the dam.     

Use of microorganism-immobilized polyurethane foams to absorb and degrade oil on water surface

Highly oil-absorbent polyurethane foam (PUF) materials were obtained by polymerizing polyether polyol mixture and carbodiimide-modified d-methyl diisocyanate in a weight ratio of 10:2. The foam materials were prepared to contain inorganic nutrients (slow-release fertilizer; SRF) and oil-degrading yeast cells, Yarrowia lipolytica 180, to be applied for removal of oil films on surface waters through absorption and biodegradation after oil spills. PUFs absorbed 7–9 times their own weight of Arabian light crude oil and the oil absorbency appeared to improve as the ratio of surface area to foam weight increased. PUFs showed excellent floatability which was maintained for more than 6 months in sea water, and less than 5% of the absorbed oil was released when the foams were left on water for more than 10 days. For immobilization of yeast cells into PUFs, various immobilization techniques were tested to compare their oil degrading ability and the maintenance thereof. All immobilized cells showed oil degrading abilities as good as those of free cells immediately after the preparation of PUFs, however, the activity of chitin-immobilized cells remained at a high level for the longest period of preservation. The high efficiency of oil absorption and oil degradation by PUF-immobilized yeast cells suggested that PUF-immobilized cells have a high potential as a bioremediation technique for the treatment of oil films on surface waters. Received: 27 September 1999 / Received revision: 6 March 2000 / Accepted: 17 March 2000     

Morphological assembly mechanisms in Neotropical bat assemblages and ensembles within a landscape

Empirical studies on bat assemblages have shown that richness is not appreciably influenced by local processes such as ecological interactions. However, most of these studies have been done in large areas that include high heterogeneity, and they analyse all bat species within such areas, and thus they may be not reflecting local but supra-community conditions. We followed an ecomorphological approach to assess how bat assemblages of species from the families Phyllostomidae and Mormoopidae, and ensembles of frugivorous bats, are assembled in local habitats within a single landscape. We measured the volume of the space defined by wing morphology and quantified the average distance between species within such a volume. Then, we related these measures to local richness. Such relationships were contrasted against relationships with random assemblages to test for statistical differences. At the ensemble level of organization, we found that the frugivorous bat morphological assembly mechanism is different from random patterns, and it corresponds to the volume-increasing model. On the other hand, bat assembly mechanisms may be ubiquitous at the assemblage level, because groups of species coexisting in a local habitat and delimited only by phylogeny include more than one ecological group with no potential to interact. Assembling processes are crucial to an understanding of species diversity in local communities, and ecomorphological analyses are very promising tools that may help in their study.     

Seasonal, discharge-driven patterns of mayfly assemblages in an intermittent Neotropical stream

1. Streams in the seasonal wet and dry tropics have highly dynamic discharge regimes. Our study stream, located in mid-western Brazil, drains into the Pantanal, South America's largest wetlands, and is characterized by frequent spates in the rainy season and several weeks of interrupted flow in the dry season.
2. In order to understand how these seasonal flow patterns influence the aquatic fauna, floating litter was studied because: (i) this habitat is exposed to the current, and thus is likely to be most affected abiotically and biotically by changes in flow; and (ii) this habitat is abundant in unaltered tropical streams. Studies were conducted in a third- and a fourth-order reach. Mayflies were chosen as study organisms because they were frequent and species-rich on floating litter, and because they should to be responsive to changes in current velocity.
3. In the course of 15 months, covering one rainy and two dry seasons, mayflies showed pronounced seasonal patterns at family and genus level, which were evidently driven by discharge. Two periods of high mayfly densities were observed in the course of one year. One maximum coincided with the peak of the rainy season, the other with the peak of the dry season, and both were distinct in faunistic composition. At high current velocities the leptophlebiid Farrodes sp. was dominant and Leptohyphes sp., Acerpenna sp. and Paracloeodes sp. were frequent. In the dry season, when the river was reduced to isolated standing waters, 86–93% of all mayflies were Caenis sp.
4. Altogether sixteen mayfly genera from the families Baetidae, Caenidae, Leptohyphidae, Leptophlebiidae and Oligoneuriidae were recorded. Two genera are new to science, the baetid Aturbina was recently described (among others, from material from our study river), Acerpenna and Paracloeodes are new records for South America, and Miroculis and Terpides are recorded for the first time south of the Amazon.     

Seasonal, discharge-driven patterns of mayfly assemblages in an intermittent Neotropical stream

1. Streams in the seasonal wet and dry tropics have highly dynamic discharge regimes. Our study stream, located in mid-western Brazil, drains into the Pantanal, South America's largest wetlands, and is characterized by frequent spates in the rainy season and several weeks of interrupted flow in the dry season.
2. In order to understand how these seasonal flow patterns influence the aquatic fauna, floating litter was studied because: (i) this habitat is exposed to the current, and thus is likely to be most affected abiotically and biotically by changes in flow; and (ii) this habitat is abundant in unaltered tropical streams. Studies were conducted in a third- and a fourth-order reach. Mayflies were chosen as study organisms because they were frequent and species-rich on floating litter, and because they should to be responsive to changes in current velocity.
3. In the course of 15 months, covering one rainy and two dry seasons, mayflies showed pronounced seasonal patterns at family and genus level, which were evidently driven by discharge. Two periods of high mayfly densities were observed in the course of one year. One maximum coincided with the peak of the rainy season, the other with the peak of the dry season, and both were distinct in faunistic composition. At high current velocities the leptophlebiid Farrodes sp. was dominant and Leptohyphes sp., Acerpenna sp. and Paracloeodes sp. were frequent. In the dry season, when the river was reduced to isolated standing waters, 86–93% of all mayflies were Caenis sp.
4. Altogether sixteen mayfly genera from the families Baetidae, Caenidae, Leptohyphidae, Leptophlebiidae and Oligoneuriidae were recorded. Two genera are new to science, the baetid Aturbina was recently described (among others, from material from our study river), Acerpenna and Paracloeodes are new records for South America, and Miroculis and Terpides are recorded for the first time south of the Amazon.     

Comparative life cycle assessment of rapeseed oil and palm oil

Background, aim and scope  

The environmental effect of globalisation has been debated intensively in the last decades. Only few well-documented analyses of global versus local product alternatives exist, whilst recommendations on buying local are vast. At the same time, the European Environmental Agency’s Third Assessment concludes that the resource use within the EU is stabilising at the expense of increased resource use for import of products to the EU. Taking its point of departure in vegetable oils, this article compares rapeseed oil and palm oil as a local and a global alternative for meeting the increasing demand for these products in the EU. By using detailed life cycle assessment (LCA), this study compares the environmental impacts and identifies alternative ways of producing rapeseed oil and palm oil to the EU market in order to reduce environmental impacts.     

Functional structure of ant and termite assemblages in old growth forest,logged forest and oil palm plantation in Malaysian Borneo

Forested tropical landscapes around the world are being extensively logged and converted to agriculture, with serious consequences for biodiversity and potentially ecosystem functioning. Here we investigate associations between habitat disturbance and functional diversity of ants and termites—two numerically dominant and functionally important taxa in tropical rain forests that perform key roles in predation, decomposition, nutrient cycling and seed dispersal. We compared ant and termite occurrence and composition within standardised volumes of soil and dead wood in old growth forest, logged forest and oil palm plantation in Sabah, Malaysian Borneo. Termites occurred substantially less frequently in converted habitats than in old growth forest, whereas ant occurrences were highest in logged forest and lowest in old growth forest. All termite feeding groups had low occurrence in disturbed habitats, with soil feeders occurring even less frequently than wood feeders. Ant functional groups showed more variable associations, with some opportunist and behaviourally dominant groups being more abundant in degraded habitats. The importance of ants and termites in tropical ecosystems and such differing patterns of assemblage variation suggest that ecosystem functioning may be significantly altered in converted habitats.     

Chimpanzees using stones to crack open oil palm nuts in Liberia

The use of stone-tools to open palm nuts (Elaeis guineensis) was studied in a group of 16 chimpanzees (Pan troglodytes) released from captivity to a natural island setting in Liberia. The behaviour was started by one female of the group; it then spread to 12 others over periods varying from a few seconds to a few weeks. Nut-cracking soon spread to three other sites, both spontaneously and with human encouragement. Both nuts and tools were carried distances of several hundred meters. Social interaction at cracking sites was rich and varied, ranging from fights over possession of tools to unsolicited sharing of nuts. Nut-crackers showed selectivity in schoosing “good” nuts and varied their methods according to the qualities of the nuts. Individual differences in technique emerged. These are the first detailed behavioural data on palm-nut-cracking, and they show many parallels with nut-cracking of other species by chimpanzees of the Tai Forest, Ivory Coast. This is another example of hammer-stone use from a limited region of West Africa: southeastern Guinea, eastern Liberia, and western Ivory Coast. This suggests limited cultural diffusion of the custom.     

Effects of palm oil and transesterified palm oil on chylomicron and VLDL triacylglycerol structures and postprandial lipid response

The effects of positional distribution of triacylglycerol (TAG) fatty acids to TAG structures in chylomicrons and VLDL, and to postprandial lipemia, were studied in 10 healthy premenopausal women using a 6-h oral fat load test and a randomized, double-blind cross-over design. Molecular level information of TAG regioisomerism was obtained with a tandem mass spectrometric method. The positional distribution of fatty acids in chylomicron TAGs was similar to the respective dietary fat; 79% of the analyzed regioisomers in palm oil and 84% of the analyzed regioisomers in transesterified oil were found in chylomicron TAGs 3 h after the oral fat loads. VLDL TAGs were equal after the two fat loads in all but one regioisomer. Similarities in the fatty acid compositions of chylomicron TAGs suggest that palmitic acid was absorbed equally from both test fats. The proportion of palmitoleic acid in the chylomicrons was increased. Fat with palmitic acid predominantly in the sn-1 and sn-3 positions caused a larger incremental area of total TAGs in plasma and reduced plasma insulin values at the beginning of the postprandial response (0-90 min) compared with fat with palmitic acid randomly distributed. The relationship between TAG molecular structures in dietary fats and in lipoproteins provides new means for understanding the effects of fatty acid positional distribution on human lipid metabolism.     

Transgenic oil palm: production and projection

Oil palm is an important economic crop for Malaysia. Genetic engineering could be applied to produce transgenic oil palms with high value-added fatty acids and novel products to ensure the sustainability of the palm oil industry. Establishment of a reliable transformation and regeneration system is essential for genetic engineering. Biolistic was initially chosen as the method for oil palm transformation as it has been the most successful method for monocotyledons to date. Optimization of physical and biological parameters, including testing of promoters and selective agents, was carried out as a prerequisite for stable transformation. This has resulted in the successful transfer of reporter genes into oil palm and the regeneration of transgenic oil palm, thus making it possible to improve the oil palm through genetic engineering. Besides application of the Biolistics method, studies on transformation mediated by Agrobacterium and utilization of the green fluorescent protein gene as a selectable marker gene have been initiated. Upon the development of a reliable transformation system, a number of useful targets are being projected for oil palm improvement. Among these targets are high-oleate and high-stearate oils, and the production of industrial feedstock such as biodegradable plastics. The efforts in oil palm genetic engineering are thus not targeted as commodity palm oil. Due to the long life cycle of the palm and the time taken to regenerate plants in tissue culture, it is envisaged that commercial planting of transgenic palms will not occur any earlier than the year 2020.     

Process integration possibilities for biodiesel production from palm oil using ethanol obtained from lignocellulosic residues of oil palm industry

In this paper, integration possibilities for production of biodiesel and bioethanol using a single source of biomass as a feedstock (oil palm) were explored through process simulation. The oil extracted from Fresh Fruit Bunches was considered as the feedstock for biodiesel production. An extractive reaction process is proposed for transesterification reaction using in situ produced ethanol, which is obtained from two types of lignocellulosic residues of palm industry (Empty Fruit Bunches and Palm Press Fiber). Several ways of integration were analyzed. The integration of material flows between ethanol and biodiesel production lines allowed a reduction in unit energy costs down to 3.4%, whereas the material and energy integration leaded to 39.8% decrease of those costs. The proposed integrated configuration is an important option when the technology for ethanol production from biomass reaches such a degree of maturity that its production costs be comparable with those of grain or cane ethanol.