Effect of soil and litter type on outgrowth patterns of mycelial systems of Phanerochaete velutina

Abstract: The outgrowth patterns of Phanerochaete velutina from woody resources varied depending on the soil/litter type. There were clear differences in mycelial extension rate, time between contact with and emergence from baits, mycelial biomass, and extra-resource mycelial responses to contact with new resources depending on soil type, though there was little difference between fractal dimension, i.e. space filling, of mycelia with time or soil/litter type. In a few replicates, particularly in components from the Lawson's cypress stand, mycelia sometimes became brownish colour, ceased growth and eventually disintegrated. In litter the pattern of mycelial development was quite different from that in soil due to subsurface growth in which needles were often colonised. In humus, mycelial development was somewhat similar to that in soil.     

Foraging patterns of Phallus impudicus, Phanerochaete laevis and Steccherinum fimbriatum between discontinuous resource units in soil

Abstract Wood blocks colonised by the basidiomycetes Phallus impudicus, Phanerochaete laevis and Steccherinum fimbriatum were placed individually in plastic trays containing moist, unsterilised soil. All three fungi grew out radially from the inoculum blocks, forming networks of mycelial cords. Outgrowth patterns of P. impudicus and P. laevis were similar in controls to those in experiments where a second uncolonised wood block was placed as a 'bait' several centimetres away from the inoculum block. However, contact with the bait by S. fimbriatum resulted in marked changes in growth pattern. These changes included cessation of radial extension from the inoculum, thickening of connective mycelium between inoculum and bait, outgrowth from the bait in the original direction of travel and regression of non-connective mycelium. These observations emphasize the collective organisation of mycelial systems and the differences in their growth pattern which can arise from varying foraging strategies.     

Heavy metals have different effects on mycelial morphology of Achlya bisexualis as determined by fractal geometry

The morphological response, as measured by changes to mycelial area, radial extension and border fractal dimension, of the oomycete Achlya bisexualis to Cu, Co, Hg, Zn and Cd at concentrations of between 0.05 and 3 mM is described. All of the metals decreased mycelial area and radial extension. Border fractal dimension increased in the presence of Cu, Co and Hg with individual hyphae extending out beyond the mycelial margin. In the presence of 3 mM Hg these hyphae displayed spiral growth. Zn and Cd had no effect on border fractal dimension. We suggest that all of the metals slow growth and that Cu, Co and Hg may also disrupt the relationship between tip growth and branching at the edge of the mycelium.     

Development,persistence and regeneration of foraging ectomycorrhizal mycelial systems in soil microcosms

Development of extraradical mycelia of two strains each of Paxillus involutus and Suillus bovinus in ectomycorrhizal association with Pinus sylvestris seedlings was studied in two dimensions in non-sterile soil microcosms. There were significant inter- and intra-specific differences in extraradical mycelial growth and morphology. The mycelial systems of both strains of P. involutus were diffuse and extended more rapidly than those of S. bovinus. Depending on the strain, P. involutus mycelia were either highly plane filled, with high mass fractal dimension (a measure of space filling) or sparse, low mass fractal dimension systems. Older mycelial systems persisted as linear cords interlinking ectomycorrhizal tips. S. bovinus produced either a mycelium with a mixture of mycelial cords and diffuse fans that rapidly filled explorable area, or a predominately corded mycelium of minimal area cover. In the soil microcosms, mass fractal dimension and mycelial cover tended to increase with time, mycelia encountering litter having significantly greater values. Results are discussed in terms of the ecology of these fungi, their foraging activities and functional importance in forest ecosystems.     

Chemical composition of litter affects the growth and enzyme production by the saprotrophic basidiomycete Hypholoma fasciculare

Chemical composition of litter has previously been reported to affect in situ decomposition. To identify its effects on a single species level, the saprotrophic basidiomycete Hypholoma fasciculare was grown on 11 types of litter with variable chemical composition (N content of 3.4–28.9 mg g⁻¹), and the mass loss of litter and lignin, production of extracellular enzymes and fungal biomass were followed. After 12 weeks, mass loss ranged from 16 % to 34 %. During early decomposition stages, litter mass loss, fungal biomass production (estimated by ergosterol content) as well as fungal substrate use efficiency all increased with increasing initial N content of the litter. The initial litter decomposition rate was significantly positively correlated with the activities of arylsulfatase, cellobiohydrolase, endoxylanase and phosphatase. Contrary to expectations, the lignin content did not affect litter mass loss, when covariation with N content was accounted for. The ratio of lignin loss to total mass loss depended on the litter type and did not reflect the activities of ligninolytic enzymes.     

Seed set variation in wild Clarkia populations: teasing apart the effects of seasonal resource depletion,pollen quality,and pollen quantity

In habitats where resource availability declines during the growing season, selection may favor early‐flowering individuals. Under such ephemerally favorable conditions, late‐blooming species (and individuals) may be particularly vulnerable to resource limitation of seed production. In California, a region prone to seasonal drought, members of the annual genus Clarkia are among the last to flower in the spring. We compared pollen limitation (PL) of seed set and outcrossing rates between early‐ and late‐flowering individuals in two mixed‐mating Clarkia taxa to detect whether flowering time is associated with changes in seed set due to resource depletion, PL, or increased selfing. In 2008–2010, we hand‐pollinated one flower on a total of 1855 individual plants either Early (near the onset of flowering) or Late (near the end of flowering) in the flowering season and compared seed set to adjacent, open‐pollinated flowers on the same stem. To assess the contribution of pollen quality to reproduction, we first (2008) used allozymes to estimate outcrossing rates of seeds produced by Early and Late open‐pollinated flowers. Second (2009), we conducted an anther‐removal experiment to estimate self‐pollen deposition. Seed set in Clarkia unguiculata was not pollen‐limited. Clarkia xantiana ssp. xantiana was pollen‐limited in 2008 and 2010, but not 2009. PL did not differ between Early and Late treatments. In both taxa, seed set of Early flowers was greater than Late flowers, but not due to PL in the latter. Reproduction was generally pollinator‐dependent. Most pollen deposition was xenogamous, and outcrossing rates were >0.7 – and similar between Early and Late periods. These results suggest that pollen receipt and pollen quality remain seasonally consistent. By contrast, the resources necessary to provision seeds decline, reducing the fitness benefits associated with resource allocation to ovules.     

Multi-scale effects of resource patchiness on foraging behaviour and habitat use by longnose dace, Rhinichthys cataractae

1. We examined the response of a predatory benthic fish, the longnose dace ( Rhinichthys cataractae ), to patchiness in the distribution of benthic macroinvertebrates on cobbles at three hierarchical spatial scales during summer and autumn 1996, and spring 1997 in a southern Appalachian stream. 2. At the primary scale (four to five individual cobbles separated by <1 m), the intensity of foraging was not correlated with the biomass of benthic macroinvertebrates/cobble, regardless of season. 3. At the secondary scale (i.e. foraging patches <5 m in diameter) we found that benthic macroinvertebrates were patchily distributed in summer, but not in autumn or spring. Concomitantly, in summer, longnose dace foraged on cobbles with a significantly higher biomass of benthic macronvertebrates than nearby, randomly selected cobbles with similar physical conditions (i.e. longnose dace tended to avoid low-prey foraging patches). In contrast, when benthic macroinvertebrates were distributed homogeneously (spring and autumn), dace did not select patches with a significantly higher biomass of benthic macroinvertebrates than that available on randomly selected cobbles. 4. At the tertiary scale (i.e. stream reaches 11–19 m long), the biomass of benthic macroinvertebrates (per cobble per reach) was patchily distributed (i.e. differed significantly among reaches) in all seasons. Among reaches with physical characteristics preferred by longnose dace, (i.e. erosional reaches dominated by cobble/boulder substratum and high current velocity), we detected a significant, positive correlation between the biomass of benthic macroinvertebrates/cobble and longnose dace density in all seasons. 5. Our results demonstrated that both spatial and temporal patchiness in resource availability influenced significantly the use of both foraging patches and stream reaches by longnose dace.     

The effect of competition on choice by pigeons: foraging rate,resource availability and learning

The effect of competition on food choice by pigeons was examined in a within-subject laboratory study. Pigeons foraged on maize (the more preferred item) and wheat (the less preferred item) in two conditions: alone and with a competitor. Over the course of the experiment an effect of competition on individual choice developed: the pigeons came to choose less maize before the first grain of wheat was taken, and to show a higher proportion of choices of wheat. The effect of competition was entirely due to resource availability: no effect of the competitor per se was found once the number of grains of maize and wheat available for any one choice was taken into account. Choice behaviour changed over time because the birds learned to forage faster in competition, which in turn led to faster depletion rates.     

Optimal foraging versus shared doom effects: interactive influence of mussel size and epibiosis on predator preference

In the western Baltic Sea, the highly competitive blue mussel Mytilus edulis tends to monopolize shallow water hard substrata. In many habitats, mussel dominance is mainly controlled by the generalist predator Carcinus maenas. These predator-prey interactions seem to be affected by mussel size (relative to crab size) and mussel epibionts.There is a clear relationship between prey size and predator size as suggested by the optimal foraging theory: Each crab size class preferentially preys on a certain mussel size class. Preferred prey size increases with crab size.Epibionts on Mytilus, however, influence this simple pattern of feeding preferences by crabs. When offered similarly sized mussels, crabs prefer Balanus-fouled mussels over clean mussels. There is, however, a hierarchy of factors: the influence of attractive epibiotic barnacles is weaker than the factor ‘mussel size’. Testing small mussels against large mussels, presence or absence of epibiotic barnacles does not significantly alter preferences caused by mussel size. Balanus enhanced crab predation on mussels in two ways: Additional food gain and, probably more important, improvement in handling of the prey. The latter effect is illustrated by the fact that artificial barnacle mimics increased crab predation on mussels to the same extent as do live barnacles.We conclude that crab predation preferences follows the optimal foraging model when prey belong to different size classes, whereas within size classes crab preferences is controlled by epibionts.     

Colonisation by a dominant ant facilitated by anthropogenic disturbance: effects on ant assemblage composition, biomass and resource use

Dominant species are thought to regulate species composition and assemblage structure. Invasion by a dominant species is thus likely to alter assemblages and anthropogenic disturbance often facilitates such invasions. In this study we examined the association of a dominant ant, Iridomyrmex purpureus , native to south-eastern Australia, with fire trails in national parks and its effects on ant assemblages. Association with fire trails was examined by comparing the numbers of I. purpureus nests on transects along fire trails with those in transects through surrounding vegetation. Ant assemblages and habitat characteristics of eight sandstone outcrops that supported colonies of I. purpureus were compared with those on eight that did not in summer and autumn 2000. We examined ant species richness, abundance, composition and biomass using quadrats, and resource use with Acacia botrycephalus seeds placed on rock and in vegetation. I. purpureus nests were considerably more common along fire trails than in surrounding vegetation. Sites with I. purpureus had similar species richness to those without, but a lower abundance and biomass of other ants and a different assemblage composition. These differences could not be attributed to any differences in measured habitat characteristics. Ecologically similar species, particularly other species of Iridomyrmex , were less abundant in areas with I. purpureus . While the biomass of other species was suppressed in areas with I. purpureus , the biomass of the dominant was several times that of the assemblage of other ants, a pattern shared with assemblages invaded by exotic species. In areas with I. purpureus , seeds were removed more rapidly from rock, but not vegetation, indicating that resources on rock may be under-exploited by other species. Regulation of invaded ant assemblages by this dominant ant is thus limited to functionally similar species, and this may be due to its use of resources that are unexploited in its absence.     

Feeding behavior ofRhagoletis pomonella flies (Diptera: Tephritidae): Effect of initial food quantity and quality on food foraging,handling costs,and bubbling

Under seminatural conditions feeding and postfeeding behaviors of individual apple maggot flies, Rhagoletis pomonella(Diptera: Tephritidae), were recorded after flies were presented with yeast hydrolysate or sucrose droplets, varying in either concentration, amount of food solute, or total droplet volume. The objectives were (a) to establish, at a constant level of previous food deprivation, food ingestion thresholds in relation to food quality and quantity and (b) to study the effect of initial food quantity and quality on food handling time and subsequent food foraging behavior. For both carbohydrate and protein substrates, fly foraging time after feeding on a tree branchlet was positively related to total amount of food solute previously encountered on a leaf surface, though largely independent of food volume or concentration. The volume and concentration of food presented, however, significantly affected food handling and processing time and therefore foraging time. In fact, total branchlet residence time was more closely linked to food handling and processing time than to foraging time. Less time was needed for uptake of liquid than dry food, the latter requiring liquification by salivary secretion and eliciting considerable intermittent cleaning of mouthparts by feeding flies. Similar to the situation in other fluid feeders, uptake time in R. pomonelladecreased with increasing dilution, although below a threshold of a 30% concentration of solute, the rate of nutrient intake decreased rapidly. When the level of dilution and total volume of food ingested were great enough, engorged flies entered extended quiescent postfeeding periods during which they extrude orally droplets of liquid crop contents (bubbling). After this they reinitiated feeding, followed by more bubbling and feeding bouts. Multivariate logistic regression analysis suggested that bubbling behavior is determined by liquid food volume and degree of dilution, hunger, and temperature. Although thresholds triggering bubbling decreased with increasing temperature, higher temperature by itself did not result in bubbling behavior. This suggests that bubbling is not primarily a mechanism to achieve evaporative cooling as has been suggested but, rather, a behavior to eliminate excess water, thereby enabling engorged flies to continue feeding on diluted food sources.     

A systematic comparison of three structure determination methods from NMR data: Dependence upon quality and quantity of data

Summary We have systematically examined how the quality of NMR protein structures depends on (1) the number of NOE distance constraints. (2) their assumed precision, (3) the method of structure calculation and (4) the size of the protein. The test sets of distance constraints have been derived from the crystal structures of crambin (5 kDa) and staphylococcal nuclease (17 kDa). Three methods of structure calculation have been compared: Distance Geometry (DGEOM), Restrained Molecular Dynamics (XPLOR) and the Double Iterated Kalman Filter (DIKF). All three methods can reproduce the general features of the starting structure under all conditions tested. In many instances the apparent precision of the calculated structure (as measured by the RMS dispersion from the average) is greater than its accuracy (as measured by the RMS deviation of the average structure from the starting crystal structure). The global RMS deviations from the reference structures decrease exponentially as the number of constraints is increased, and after using about 30% of all potential constraints, the crrors asymptotically approach a limiting value. Increasing the assumed precision of the constraints has the same qualitative effect as increasing the number of constraints. For comparable numbers of constraints/residue, the precision of the calculated structure is less for the larger than for the smaller protein, regardless of the method of calculation. The accuracy of the average structure calculated by Restrained Molecular Dynamics is greater than that of structures obtained by purely geometric methods (DGEOM and DIKF).     

Effects of flowering plant's patch size on species composition of pollinator communities,foraging strategies,and resource partitioning in bumblebees (Hymenoptera: Apidae)

Summary In 4 common Middle-European mainly bumblebee-pollinated plant species (Impatiens glandulifera, Echium vulgare, Aconitum napellus, Symphytum officinale) the influence of patch size on species composition of the pollinator community was studied. Short-tongued species were most dominant in large patches, while small patches were frequented by middle- and long-tongued bumblebees. This phenomenon was extremely obvious in Symphytum officinale and Aconitum napellus, where short-tongued species had bitten a hole in nearly every flower of large patches. Long-tongued species were forced to small patches, where nectarrobbing occurred only exceptionally. In small patches visitationrate (Number of visits per flower per hour) was not lower but either equal or even higher then in large patches. Nectar measurements in Echium vulgare showed, that not only the mean quantity of nectar but also the variance was lower in small patches. As a result, the possible gain can be predicted much more precisely in a small patch than in a large one, and bumblebees have less difficulties in making the right foraging decisions. According to this, foraging strategies depend on patch size. This was confirmed by a computer simulation. The conclusion can be drawn, that many bumblebee species are able to share the same resource by using different patch sizes. Since large flower patches occur mainly in man-made habitats, the dominance of short-tongued species in many bumblebee communities studied by other authors may be unnatural.Supported by the Landesgraduiertenförderung Baden-Württemberg     

Evaluation of self-similar features in time series of serum growth hormone and prolactin levels by fractal analysis: Effect of delayed sleep and complexity of diurnal variation

We assayed the diurnal concentrations of growth hormone (GH) and prolactin (PRL) in 6 healthy male volunteers to evaluate the self-similar features in the time series of each hormone on the basis of fractal theory and to determine the fractal dimension as an index of the complexity of the diurnal variation. In addition, we assessed the effects of a 6-hour delay in the sleep period on the complexity of the diurnal variaton of these hormones. There was a statistically significant fractal feature in the serum levels of GH both under the nocturnal-sleep and delayed-sleep conditions in all subjects. The time series of the serum PRL concentrations also showed a statistically significant fractal feature under the nocturnal-sleep and delayed-sleep conditions in all subjects. The fractal dimensions of the patterns of the GH or PRL levels were 1.879 and 1.929 or 1.754 and 1.785 under the nocturnal-sleep and delayed-sleep conditions, respectively. Two-way ANOVA revealed no significant difference in the fractal dimension between the two sleep conditions but did reveal a significant difference between the fractal dimensions of the GH and PRL levels. These results showed (1) that delayed sleep had no significant effect on the complexity of the diurnal pattern of these hormones, and (2) that the diurnal pattern of the GH levels was more complex than that of the PRL levels.     

Costs and benefits of flocking in foraging white-fronted geese (Anser albifrons): effects of resource depletion

This study investigated the costs and benefits of flocking in white-fronted geese Anser albifrons foraging on rice grains in Japan. The time budgets of focal geese were recorded, and the effects of flock size on the proportions of time spent in vigilant and agonistic behaviour were tested. The results showed that the decline in vigilance level and consequent increase in foraging time were beneficial results of flocking whereas agonistic interactions, a potential cost of flocking, did not increase with increasing flock size. However, seasonal variation in flock size suggested that exploitative competition could be a cost of flocking; the sizes of flocks in spring, when resource depletion had progressed, were significantly reduced compared with those in autumn. An experimental increase in rice density resulted in a significant increase in flock size. We conclude that the flock size of foraging white-fronted geese is a result of compromise between a constant benefit of flocking (i.e. decline in vigilance level) and a cost of flocking varying with food abundance (i.e. exploitative competition).     

Trapline foraging by bumble bees: III. Temporal patterns of visitation and foraging success at single plants

We analyzed the temporal structure of visitation by bumble beeworkers to a single Penstemon strictus plant growing in an arrayof conspecifics. When tested against a null distribution usinga randomization model, the observed pattern of arrivals forthe whole group of bees was random, but departures were clusteredin time. Certain individuals visited the plant repeatedly andfrequently throughout the day. These showed significantly regulararrival and departure schedules, which were likely producedby traplining. We explored whether these more frequent and regularforagers gained a higher reward than random or incidental plantvisitors. Using an analytical model, Possingham predicted thata dominating forager that visited a simple, renewing resourcein a regular pattern would garner higher and less variable rewardsthan random visitors. Inspired by these results, but interestedin plant-level visitation, we constructed a simulation modelof resource dynamics for a multiflowered plant with high visitation.The model incorporates the observed visitation schedules ofall bees and independent reward dynamics for each flower onthe plant. We calculated the rewards that observed bees wouldhave collected given a range of resource-renewal parameters.More frequent visitors did not return to the plant when whole-plantresource levels were higher, but these visitors did get greaterrewards. Their increased reward resulted from greater foragingefficiency, primarily through selecting (on average) more rewardingflowers than those selected by less frequent, random visitors.     

Organic matter quality and management effects on enrichment of soil organic matter fractions in contrasting soils in Zimbabwe

Spatial variability of soil total nitrogen (N), available N (KCl extractable NH₄⁺ and NO₃⁻), and spatial patterns of N mineralization and nitrification at a stand scale were characterized with geostatistical and univariate analysis. Two extensive soil spatial samplings were conducted in an evergreen broadleaf forest in Sichuan province, southwestern China in June and August 2000. In a study area of 90 × 105 m², three soil samples were collected from each 5 × 5 m² plot (n = 378) in June and August, and were analyzed for total N and available N contents. Net N mineralization and nitrification were measured by in situ core incubation and the rates were estimated based on the difference of NH₄⁺ and NO₃⁻ contents between the two sampling dates. Total N, NH₄⁺, and NO₃⁻ were all spatially structured with different semivariogram ranges (from high to low: NH₄⁺, NO₃⁻, and total N). The semivariograms of mineralization and nitrification were not as spatially structured as available N. NH₄⁺ was the dominant soil inorganic N form in the system. Both NH₄⁺ and NO₃⁻ affected spatial patterns of soil available N, but their relative importance switched in August, probably due to high nitrification as indicated by greatly increased soil NO₃⁻ content. High spatial auto-correlations (>0.7) were found between available N and NH4⁺, available N and NO₃⁻ on both sampling dates, as well as total N measurements between both sampling dates. Although significant, the spatial auto-correlation between NH₄⁺ and NO₃⁻ were generally low. Topography had significant but low correlations with mineralization (r = −0.16) and nitrification (r = −0.14), while soil moisture did not. The large nugget values of the calculated semivariograms and high-semivariance values, particularly for mineralization and nitrification, indicate that some fine scale (<5 m) variability may lie below the threshold for detection in this study.