Interactions between a mycophagous Collembola,dry yeast and the external mycelium of an arbuscular mycorrhizal fungus

 A plant growth system with root-free hyphal compartments was used to examine the interactions between a mycophagous Collembola (Folsomia candida Willem), dry yeast and an arbuscular mycorrhizal (AM) fungus [Glomus caledonium (Nicol. & Gerd.) Trappe and Gerdemann] in terms of Collembola reproduction, AM-hyphal length and AM-hyphal P transport. Collembola reproduction was unaffected by AM mycelium, but a supplement of dry yeast increased the Collembola population size. The addition of dry yeast increased AM-hyphal P transport by increasing hyphal length. Collembola without yeast affected neither AM-hyphal growth nor AM-hyphal P transport, whereas Collembola with yeast decreased AM-hyphal P transport by 75% after 8 weeks. The hyphal density of G. caledonium remained unaffected by Collembola except after 4 weeks in combination with yeast, when a 33% reduction was observed. The results of this experiment show that the interaction between F. candida and the external mycelium of G. caledonium is limited under the conditions imposed. Accepted: 27 February 1996     

Sampling distributions, biases, variances, and confidence intervals for genetic correlations

Genetic correlations are frequently estimated from natural and experimental populations, yet many of the statistical properties of estimators of are not known, and accurate methods have not been described for estimating the precision of estimates of Our objective was to assess the statistical properties of multivariate analysis of variance (MANOVA), restricted maximum likelihood (REML), and maximum likelihood (ML) estimators of by simulating bivariate normal samples for the one-way balanced linear model. We estimated probabilities of non-positive definite MANOVA estimates of genetic variance-covariance matrices and biases and variances of MANOVA, REML, and ML estimators of and assessed the accuracy of parametric, jackknife, and bootstrap variance and confidence interval estimators for MANOVA estimates of were normally distributed. REML and ML estimates were normally distributed for but skewed for and 0.9. All of the estimators were biased. The MANOVA estimator was less biased than REML and ML estimators when heritability (H), the number of genotypes (n), and the number of replications (r) were low. The biases were otherwise nearly equal for different estimators and could not be reduced by jackknifing or bootstrapping. The variance of the MANOVA estimator was greater than the variance of the REML or ML estimator for most H, n, and r. Bootstrapping produced estimates of the variance of close to the known variance, especially for REML and ML. The observed coverages of the REML and ML bootstrap interval estimators were consistently close to stated coverages, whereas the observed coverage of the MANOVA bootstrap interval estimator was unsatisfactory for some H, n, and r. The other interval estimators produced unsatisfactory coverages. REML and ML bootstrap interval estimates were narrower than MANOVA bootstrap interval estimates for most H, and r. Received: 6 July 1995 / Accepted: 8 March 1996     

Genetic variance, coefficient of parentage, and genetic distance of six soybean populations

Plant breeders would like to predict which biparental populations will have the largest genetic variance. If the population genetic variance could be predicted using coefficient of parentage or genetic distance estimates based on molecular marker data, breeders could choose parents that produced segregating populations with a large genetic variance. Three biparental soybean {Glycine max (L.) Merr.} populations were developed by crossing parents that were closely related, based on pedigree relationships. Three additional biparental populations were developed by crossing parents that were assumed to be unrelated. The genetic variance of each population was estimated for yield, lodging, physiological maturity, and plant height. Coefficient of parentage was calculated for each pair of parents used to develop the segregating populations. Genetic distance was determined, based on the number of random amplified polymorphic markers (RAPD) that were polymorphic for each pair of parents. Genetic distance was not associated with the coefficient of parentage or the magnitude of the genetic variance. The genetic variance pooled across the three closely related populations was smaller than the genetic variance pooled across the three populations derived from crossing unrelated parents for all four traits that were evaluated. Received: 24 April 1996 / Accepted: 17 May 1996     

Interactions between Pisolithus tinctorius and its hosts: a review of current knowledge

 Pisolithus tinctorius (Pers.) Coker and Couch [Syn. = P. arhizus (Scop.: Pers.) Rauschert] (Pt) is a widespread ectomycorrhizal basidiomycete forming mycorrhizas with a variety of hosts. Developmental and functional aspects of the symbiosis are well documented and thus Pt has been adopted as a model organism for investigations of the molecular basis of ectomycorrhizal interactions. In this review of the current state of knowledge of interactions between Pt and its hosts we demonstrate that Pt displays much intraspecific heterogeneity of host specificity, physiology and the benefits the fungus can impart upon the host plant. It is not clear at present how far such heterogeneity reflects systematic segregation within Pt. Accepted: 20 May 1997     

Interactions between taurine and ethanol in the central nervous system

Summary.  This purpose of this review will be to summarize the interactions between the endogenous amino acid taurine and ethyl alcohol (ethanol) in the central nervous system (CNS). Taurine is one of the most abundant amino acids in the CNS and plays an integral role in physiological processes such as osmoregulation, neuroprotection and neuromodulation. Both taurine and ethanol exert positive allosteric modulatory effects on neuronal ligand-gated chloride channels (i.e., GABA_A and glycine receptors) as well as inhibitory effects on other ligand- and voltage-gated cation channels (i.e., NMDA and Ca²⁺ channels). Behavioral evidence suggests that taurine can alter the locomotor stimulatory, sedating, and motivational effects of ethanol in a strongly dose-dependent manner. Microdialysis studies have revealed that ethanol elevates extracellular levels of taurine in numerous brain regions, although the functional consequences of this phenomenon are currently unknown. Finally, taurine and several related molecules including the homotaurine derivative acamprosate (calcium acetylhomotaurinate) can reduce ethanol self-administration and relapse to drinking in both animals and humans. Taken together, these data suggest that the endogenous taurine system may be an important modulator of effects of ethanol on the nervous system, and may represent a novel therapeutic avenue for the development of medications to treat alcohol abuse and alcoholism. Received November 21, 2001 Accepted January 4, 2002 Published online August 20, 2002 Acknowledgements This work was supported by funds from the State of California for medical research on alcohol and substance abuse through the University of California at San Francisco. The author wishes to thank Drs. C. W. Hodge and P. H. Janak for their support and helpful discussions. Author's address: Dr. M. Foster Olive, Ernest Gallo Clinic and Research Center, Department of Neurology, University of California at San Francisco, 5858 Horton Street, Suite 200, Emeryville, California, U.S.A., Fax +1/510/985 3101, E-mail: folive@itsa.ucsf.edu     

Gliadin polymorphism in wild and cultivated einkorn wheats

To study the relationships between different species of the Einkorn group, 408 accessions of Triticum monococcum, T. boeoticum, T. boeoticum ssp. thauodar and T. urartu were analyzed electrophoretically for their protein composition at the Gli-1 and Gli-2 loci. In all the species the range of allelic variation at the loci examined is remarkable. The gliadin patterns of T. monococcum and T. boeoticum were very similar to one another but differed substantially from those of T. urartu. Several accessions of T. boeoticum and T. monococcum were shown to share the same alleles at the Gli-1 and Gli-2 loci, confirming the recent nomenclature that considers these wheats as different subspecies of the same species, T. monococcum. The gliadin composition of T. urartu resembled that of the A genome of polyploid wheats more than did T. boeoticum or T. monococcum, supporting the hypothesis that T. urartu, rather than T. boeoticum, is the donor of the A genome in cultivated wheats. Because of their high degree of polymorphism the gliadin markers may help in selecting breeding parents from diploid wheat germ plasm collections and can be used both to search for valuable genes linked to the gliadin-coding loci and to monitor the transfer of alien genes into cultivated polyploid wheats. Received: 8 July 1996 / Accepted: 12 July 1996     

Specifying the introgressed regions from H. argophyllus in cultivated sunflower (Helianthus annuus L.) to mark Phomopsis resistance genes

A method based upon targetting of intro-gressed markers in a Phomopsis-resistant line (R) of cultivated sunflower, issuing from a H. argophyllus cross was used to mark the Phomopsis resistance regions. Our study was based upon 203 families derived from a cross between an inbred line susceptible to Phomopsis (S1) and the introgressed resistant line (R). Families were checked for Phomopsis resistance level in a design with replicated plots and natural infection was re-inforced by pieces of contaminated stems. Thirty four primers were employed for RAPD analysis. Out of 102 polymorphic fragments between (S1) and H. argophyllus, seven were still present in (R) suggesting that they marked introgressions of H. argophyllus into (R). The plants were scored for the presence or absence of 19 fragments obtained from five primers, and the relationships between the presence/absence of fragments in plants and Phomopsis resistance/susceptiblity in the progenies was determined by using an analysis of variance. We found that at least two introgressed regions, as well as favourable factors from sunflower, contributed to the level of Phomopsis resistance in cultivated sunflower. Received: 28 June 1996 / Accepted: 5 July 1996     

Flow cytometric analysis of the chromosomes and stability of a wheat cell-culture line

A rapidly growing, long-term suspension culture derived from Triticum aestivum L. (wheat) was synchronized using hydroxyurea and colchicine, and a chromosome suspension with chromosomes was made. After staining with the DNA-specific fluorochromes Hoechst 33258 and Chromomycin univariate and bivariate flow-cytometry histograms showed 15 clearly resolved peaks corresponding to individual chromosome types or groups of chromosomes with similar DNA contents. The flow karyotype was closely similar to a histogram of DNA content measurements of Feulgen-stained chromosomes made by microdensitometry. We were able to show the stability of the flow karyotype of the cell line over a year, while a parallel subculture had a slightly different, stable, karyotype following different growth conditions. The data indicate that flow cytometric analysis of plant karyotypes enables accurate, statistically precise chromosome classification and karyotyping of cereals. There was little overlap between individual flow-histogram peaks, so the method is useful for flow sorting and the construction of chromosome specific-recombinant DNA libraries. Using bivariate analysis, the AT:GC ratio of all the chromosomes was remarkably similar, in striking contrast to mammalian flow karyotypes. We speculate about a fundamental difference in organization and homogenization of DNA sequences between chromosomes within mammalian and plant genomes. Received: 24 April 1996 / Accepted: 24 May 1996     

Interactions of light, temperature and inorganic nitrogen in controlling planktonic nitrogen utilisation in the Tagus estuary

The effect of light, temperature and ammonium on inorganic nitrogen uptake by phytoplankton was investigated from June 1994 through December 1995 at three sites in the Tagus estuary (Portugal), during high tide of neap tides. Ammonium concentrations higher than 10 M reduced nitrate uptake down to 24% but never prevented it. Below this threshold concentration, nitrate uptake was neither inhibited nor changed. Uptake of both nitrate and ammonium as a function of light intensity exhibited a saturation response. Uptake reduction occurred in the near bottom phytoplankton populations, particularly for nitrate. The ammonium uptake system was less limited by light than the nitrate uptake system, indicating the importance of ammonium as a nitrogen source for the phytoplankton which is likely to experience high changes in light in the well-mixed water column of this estuarine environment. Ammonium uptake was exponentially related to temperature in the upper estuary whereas in the mid and lower estuary this relationship was linear. The effect of temperature on nitrate uptake was linear but far less marked than for ammonium uptake.     

Highly polymorphic microsatellites of rice consist of AT repeats, and a classification of closely related cultivars with these microsatellite loci

Microsatellites consisting of AT repeats are highly polymorphic in rice genomes and can be used to distinguish between even closely related japonica cultivars in Japan. Polymorphisms of 20 microsatellite loci were determined using 59 japonica cultivars, including both domestic and modern Japanese cultivars. Although the polymorphisms of these 20 microsatellite loci indicated that the Japanese cultivars were genetically quite similar, microsatellites consisting of AT repeats showed high gene diversity even among such closely related cultivars. Combinations of these hypervariable microsatellites can be employed to classify individual cultivars, since the microsatellites were stable within each cultivar. An identification system based on these highly polymorphic microsatellites could be used to maintain the purity of rice seeds by eliminating contamination. A parentage diagnosis using 17 polymorphic microsatellite loci clearly demonstrated that plants which carried desired chromosome regions had been selected in breeding programs. Thus, these hypervariable microsatellites consisting of AT repeats should promote the selection of plants which carry desired chromosomes from genetically similar parents. Backcrossing could also help to eliminate unnecessary chromosome regions with microsatellite polymorphisms at an early stage in breeding programs. Received: 8 July 1996 / Accepted: 12 July 1996     

Habitat structure,resources and diversity: the separate effects of surface roughness and macroalgae on stream invertebrates

Habitat structure has pervasive effects on community composition and diversity, with physically complex habitats often containing more species than physically simple ones. What factors or mechanism drive this pattern is little understood, but a complicating problem is that different sources of habitat structure can be confounded in both surveys and experiments. In this study, we carried out an experiment in which two sources of habitat structure, attached macroalgae and substrate surface texture, were separately manipulated to discern their joint and separate effects upon the diversity and composition of colonizing macroinvertebrates in a stony, upland stream. Because stream algae vary markedly in abundance in both space and time, we also sampled the epilithon of stream stones at two spatial scales on eight dates over 2 years to gain some preliminary data on how stream algae vary between individual substrata over time. Experimental substrata had either a smooth (siltstones, sandstones, crystal-poor felsic volcanics, plain paving bricks) or rough (granodiorites, crystal-rich felsic volcanics, sand-blasted paving bricks) surface. We allowed these substrata to be colonized naturally by macroalgae, mostly the filamentous red alga Audouinella hermannii. Half of each of the rough and smooth substrata were selected at random and the macroalgae gently sheared off. All substrata were defaunated with a household insecticide with little field persistence, set out randomly through the study riffle, and invertebrates allowed to colonize them for 14 days. Some substrata were sampled immediately to check the efficacy of faunal and algal removals, which proved to be successful. Experimental results showed that both surface texture and macroalgae increase species richness independently of each other. Surface texture had no effect on densities, while macroalgae increased colonization densities, but rarefaction showed that both sources of habitat structure increased species richness above values expected simply on the basis of the numbers of colonists. However, reference stones with high macroalgal cover had the same species richness as those with low cover, suggesting that the effects of macroalgae on species richness are transient relative to those associated with surface texture. Epilithon samples taken at different times suggest that the magnitude of spatial variation in plant growth alters with time. If plants generally recolonize rough surfaces more quickly than smooth, then the effects of habitat structure on macroinvertebrates ought to be strongest after major disturbances during growing seasons of plants. Received: 1 September 1999 / Accepted: 10 January 2000     

Interactions between goldenrod (Solidago altissima L.) and its insect herbivore (Trirhabda virgata) over the course of succession

Consumers can mediate the composition of plant communities and alter ecosystem processes. Although herbivores usually increase N availability in the short term, they might decrease it in the long term. I investigated the long-term effect of insect herbivores on leaf tissue quality and soil N availability in goldenrod (Solidago altissima) fields using two approaches: (1) I compared plots from which herbivores had been excluded for 17 years with adjacent plots that had experienced normal levels of herbivory, and (2) I examined a chronosequence of nine goldenrod fields representing three successional stages: early, middle, and late. These parallel approaches showed that, in the long term, herbivores decrease the quality of leaf litter and soil N availability in goldenrod fields. These long-term effects appear to compensate for various short-term effects that increase N availability in the soil (e.g., added frass, increased light penetration). Furthermore, herbivores decrease leaf litter quality and N availability by reducing the quality of leaf tissue within the same species. This pattern may result from insect herbivores preferentially grazing on plants with a high N content thereby increasing the amount of recalcitrant litter over the course of succession. Received: 4 May 1999 / Accepted: 24 September 1999     

Mapping of the Rf-3 nuclear fertility-restoring gene for WA cytoplasmic male sterility in rice using RAPD and RFLP markers

The cytoplasmic male sterility (CMS) of wild-abortive (WA) cytoplasm has been widely used for breeding hybrid rice. Two restorer genes for the CMS have been found by traditional genetic analysis. To tag the restorer genes we used a set of near-isogenic lines (NILs) of Zhenshan 97 carrying different genotypes for fertility restoration from IR24, to perform RAPD analysis. From the survey of 720 random primers, six RAPD markers were identified to be associated with Rf-3. Three of these OPK05-800, OPU10-1100 and OPW01-350, were mapped on chromosome 1. Two populations from the crosses between Zhenshan 97 A and a near-isogenic restorer line ZSR21 and between Zhenshan 97 A and IR24 were used for mapping Rf-3. The three RAPD markers and three RFLP markers, RG532, RG140 and RG458, were found to be closely linked to Rf-3 in the two populations. The same location of Rf-3 was also found in a population from the cross of IR58025 A//IR36/IR58025 B. At the RG532 locus, different alleles were found between two CMS lines, Zhenshan 97 A and IR58025 A, and between two restorer lines, IR24 and IR36. The use of these molecular markers closely linked to Rf-3 in facilitating the development of hybrid rice is discussed. Received: 3 January 1996 / Accepted: 17 May 1996     

Data on mid-Holocene climatic, vegetation and anthropogenic interactions at Stanshiel Rig, southern Scotland

Pollen, microscopic charcoal and peat humification analyses were applied to radiocarbon-dated peat cores to examine environmental change before and after the mid-Holocene transition from hunter-gatherer (Mesolithic) to agricultural (Neolithic) communities in presently marginal upland pasture at Stanshiel Rig, Annandale, southern Scotland. The Mesolithic-Neolithic transition in northern Britain is characterised by a number kf key environmental changes as well as economic shifts, including temporal patterns of fire and the Ulmus decline. Deliberate vegetation modification by Mesolithic communities is not demonstrable at Stanshiel Rig, and openings in the woodland canopy may have been promoted by grazing by wild animals or have been a consequence of climate change. Changes in fire frequency are also correlated with peat- and pollen-stratigraphic evidence for shifts to a drier climate in the late Mesolithic, probably mediated through pedological and biomass-storage change. A single Ulmus decline occurred between ca. 5650 and 5600 cal B. P., and is related here to climate change. Neolithic-age impacts on the woodland were limited, and no cereal-type pollen were found. The difference between hunter-gatherer and opportunistic farmer/hunter-gatherer at this locally is argued to be insignificant, or not detectable palynologically. Received October 4, 2001 / Accepted July 22, 2002 Correspondence to: S. M. Cayless     

Levels of genetic diversity at different stages of the domestication cycle of interior spruce in British Columbia

Concerns over the reductionist nature of the domestication of forest-tree species focus on the possibility of potential genetic erosion during this process. To address these concerns, genetic diversity assessments in a breeding zone the Province of British Columbia “interior” spruce (Picea glauca×engelmanni) program was conducted using allozyme markers. Genetic-variation comparisons were made between natural and production (seed orchard) populations as well as seed and seedling crops produced from the same breeding zone’s seed orchard. The natural population sample consisted of a total of 360 trees representing three stands within each of three watersheds present in the Shuswap-Adams low-elevation zone of interior British Columbia. Small amounts of genetic differentiation were observed among the nine natural populations (4%) and this was attributable to extensive gene flow Consequently, the sum of these nine populations was considered as a baseline for the genetic variation present in the breeding zone. The comparisons between the seed orchard and the breeding zone produced a similar percentage of polymorphic loci while the expected hetrozygosity (0.207 vs 0.210) and the average number of alleles per locus (2.7 vs 2.4) were slightly lower in the seed orchard. A total of seven natural populations’ rare alleles were not present in the orchard population, while one allele was unique to the orchard. The %P increased to 70.6% in the seedlot, but dropped to the natural populations level (64.7%) in the plantation. The observed increase in %P was a result of pollen contamination in the orchard. It is suspected that the reduction in the plantation was caused by an unintentional selection in the nursery. Simulated roguing in the orchard did not drastically reduce even if up to 50% of the orchard’s clones were rogued. However, roguing was associated with a reduction in the average number of alleles per locus (i.e., sampling effect). Received: 2 January 1996 / Accepted: 24 May 1996     

Cell-specific density of symbiotic dinoflagellates in tropical anthozoans

 Symbiotic dinoflagellates are abundant in the endoderm cells of tropical marine anthozoans, but the cell-specific density (CSD) of symbionts has not yet been investigated. In this study we used mechanical and enzymatic methods of maceration, and staining with substrate-specific fluorochromes, to observe a large number of individual host cells from 33 species of tropical anthozoans collected in Florida, Hawaii and Jamaica or cultured in Monaco. In the majority of species, most of the host cells contained a single algal cell (singlet). Host cells with two or more (up to six) algae were much less abundant. The average CSD for the 33 species was 1.54±0.30 (range 1.11 to 2.19). Singlets arranged in a monolayer can account for the areal density of algae observed in many anthozoans. The dinoflagellates occupy most of the interior of macerated host cells, leaving the host cytoplasm and cell membrane as a thin outer layer, often unresolvable by light microscopy. This spatial arrangement may favor diffusion and transport of CO₂, bicarbonate ions, and nutrients from the environment to the algae. The effect of nutrient enrichment on CSD was determined by exposing eleven species to chronically elevated levels of ammonium-N. After four weeks all species exhibited a dramatic increase in algal mitotic index and CSD. The potential consequences of environmentally induced increases in CSD in tropical anthozoans are discussed in terms of the decreased cell-specific photosynthesis (CO₂ limitation) and decreased rates of calcification observed in other studies. Accepted: 16 February 1998     

Macroinvertebrate response to different species of macroalgal mats and the role of disturbance history

Over the last 20 years, the Mondego estuary, Portugal has experienced excessive growth of macroalgae especially in the inner parts of the system, with several algal species implicated. In this study, we compare the effects of morphologically different species, the red alga Gracilaria verrucosa and the green macroalga Enteromorpha intestinalis on macrobenthic assemblages, by a field experiment whereby the biomass of algae was manipulated and the resultant changes in macrofauna abundance evaluated. The experiments were carried out in different areas (a relatively undisturbed sea grass bed and an upstream eutrophic area) experiencing different degrees of overall enrichment.Measurements of sediment redox potential revealed a rapid anoxia with a significant increase in algal biomass after 4 weeks. The effects of macroalgae were different at the two sites, being more marked in the eutrophic area. In addition, the effects of Gracilaria and Enteromorpha were significantly different, with Enteromorpha having a greater detrimental effect for most of the macrofauna, in particular Cyathura carinata, Scrobicularia plana, Cerastoderma edule and Alkmaria romijni. However, three of the most abundant invertebrates (Hydrobia ulvae, Hediste diversicolor and Capitella capitata) showed significant increases in abundance in weed affected compared to weed-free plots. Gracilaria had less of an impact on macrobenthic assemblages leading to a more enriched community. Between-site differences in overall impact were related to their previous disturbance history.     

Modelling Pb and Cd dynamics in the Seine estuary

The Seine estuary (France) is currently one of the world’s most contaminated estuaries, due in particular to its high cadmium and lead content. Proper understanding of contaminant transfer, transformation and retention mechanisms throughout the estuary and up to the adjacent marine zone require a range of studies involving data collections, experiments, and modeling tool. A multivariable transport model (SiAM-3D) was used to simulate dissolved and particulate transport and it is applied to several calculation grids; a speciation model (MOCO) was used to select key species and obtain a schematic system representation. The coupled model for Cd and Pb was compared with field measurements. The complementary character of various tools (model applied to annual time scale, in situ measurements and experiments) allowed to explore and quantify various hypotheses on the high dissolved cadmium concentrations observed during low river flow. The target is to achieve a compromise between acceptable computing times and adequate result accuracy. Although particle and contaminant behaviour is globally well-reproduced by the coarse grid, calculation errors relating to bayward fluxes and stocks deposited inside the estuary were highlighted after comparison with the fine grid.     

Competition between Bufo larvae in a eutrophic pond

Competition between larvae of two anuran species (Bufo bufo and B. calamita) was investigated under field conditions likely to disfavour cell-mediated interference mechanisms. The experiment used triplicated cage treatments in an unshaded farm pond, a poor habitat for the unicellular pathogen Anurofeca richardsi implicated in interference competition between these anurans in sand dune ponds. The farm pond experienced lower maximum temperatures than a nearby dune pond but sustained larger numbers of eukaryotic algae and therefore had higher primary productivity. Survival and growth of B. calamita larvae were inversely related to density in all treatments but interspecific effects were much more severe than intraspecific ones. There was no evidence of A. richardsi in any treatment and competition between the Bufo larvae was therefore intense in the absence of Anurofeca-mediated interference effects. Anuran larvae reduced the standing crop and altered the community composition of algae in the treatment cages but larval growth rates were not simply related to food availability. Algal cell numbers in larval guts, a measure of food acquisition, were however inversely related to tadpole density in both species. Feeding niche overlap was high but decreased as larval density increased. Resource competition was implicated as the most probable major mechanism. Received: 1 September 1999 / Accepted: 20 January 2000