Factors affecting wild boar abundance across an environmental gradient in Spain

The recent Europe-wide increase in wild boarSus scrofa, Linnaeus, 1758 abundance is undoubtedly due to many different factors, the relative importance of which differs from region to region. In Aragón (northeastern Spain), wild boar enlarged its distribution area eight times in the 1990s as compared with the century before, occupying the whole region. We studied wild boar abundance along an environmental gradient in Aragón to determine which factors are most responsible for its variation. Relative abundance of wild boars was estimated by catch-effort methods in 134 hunting estates (sampling units) for 5 consecutive hunting seasons. To characterise the environmental conditions, we quantified landscape composition and structure, topographical factors and climatic factors. Hunting pressure indices were also calculated for our sampling units. The average wild boar catch per hunting activity and per 100 km² ranged from 0.72 to 16.31. Our results suggest thatwild boar abundances are affected by landscape structure, mainly by landscape diversity. In addition, lowland arid agrosystems (characterized by high temperatures and open juniper woodlands with little food availability) constrain the abundance of wild boar populations in spite of their wide plasticity to colonize new habitats.     

Establishing a serological surveillance protocol for rabbit hemorrhagic disease by combining mathematical models and field data: implication for rabbit conservation

Rabbit hemorrhagic disease (RHD) became endemic in wild rabbit (Oryctolagus cuniculus) populations in the Iberian Peninsula after its first arrival in 1988. This had significant implications for both the economy and environmental conservation because rabbits are one of the main game species in the Iberian Peninsula and a keystone species in the Mediterranean ecosystems. As a consequence, it is planned to include RHD surveillance in the Spanish Wildlife Disease Surveillance Strategy. Nevertheless, there is no practical methodology included in this program to help conservationists and gamekeepers understand the impact of disease on wild rabbit populations. Results from sera collected during the hunting season from 11 rabbit populations of Central and South Spain, which differed in their population abundance and trends, allowed us to use mathematical models to interpret the serological results gathered and determine the best strategy for finalizing a plan of RHD surveillance. Put simply, we focused our field surveys within the hunting season (October-January), and those times when the rabbit populations are at their highest (June or July). Field results showed that both rabbit abundance and population trend are closely related to the prevalence of RHD antibodies when rabbit abundance was at its annual low point (usually October-November). Rabbit population trends were positive only if antibody prevalence was high (>40%), and always negative if prevalence was low. Moreover, rabbit populations where abundance was low always showed low antibody prevalence. Since our models predicted a low variability in the prevalence obtained during the hunting season, it is suggested that future serological surveys should be carried out within this period to avoid problems related to the low sample size in low density rabbit populations.     

Rabbit populations and game management: the situation after 15 years of rabbit haemorrhagic disease in central-southern Spain

Over recent decades wild rabbit populations have undergone a sharp decline in Spain with consequent negative impact both on a game-based economy, and on the conservation of threatened species that depend on rabbits. We investigated the relationships between rabbit population change and habitat and game management in central-southern Spain. To determine recent rabbit population changes we revisited 60 localities during summer 2002 to repeat surveys previously carried out in 1993. Each survey consisted of 4-km walked transects to record indices of rabbit abundance. The percentage of vegetation cover and of different soil types were also estimated during these transects. In the same areas, the type and intensity of game management practices were obtained by interviewing hunting managers, hunters or gamekeepers. Rabbit populations were stable or increasing only in 26.6% of the studied populations, more commonly in areas with soft soils where warren building is easier for rabbits and where rabbits were an important game species and managed to increase their numbers. Although we could not establish causality, habitat management and predator removal were the main management practices related to rabbit population change. Rabbit scarcity in Spain constitutes a serious problem for conservation, so hunters, researchers and policy makers need to reach a consensus to establish a long-term program to monitor rabbit population trends and share results obtained, especially when intense manage programs are being carried out to improve rabbit abundance.     

First description of sarcoptic mange in wild European rabbit (Oryctolagus cuniculus)

The European wild rabbit (Oryctolagus cuniculus) is a keystone species in the Iberian Mediterranean ecosystems being the staple prey of protected and endangered predators. Wild rabbits were once widespread, but the introduction of two viral diseases, myxomatosis in the 1950s and the rabbit hemorrhagic disease in 1989, resulted into a dramatic decline of its populations. Sarcoptic mange is a highly contagious parasitic infection caused by Sarcoptes scabiei. The first cases of sarcoptic mange in a wild rabbit population are recorded from a hunting area in Majorca (Balearic Islands, Spain). Five of 32 inspected rabbits (14.7%) were affected, with similar prevalences in summer and autumn. Sarcoptes scabiei were obtained from the edge of the lesions of two of the rabbits. The most frequently observed lesions were small areas of alopecia and crusts in the limbs. Affected limbs presented also a marked hypertrichosis and an apparent abnormal growth of the nails. One rabbit also presented lesions around mouth and nostrils. Parasitized rabbits were in significant lower body condition than healthy ones. According to previous reports of mange epizooties in other naïve wild species that caused marked short-term effects in their populations, this disease may pose a risk for the conservation of wild rabbit and their predators. Whether mange is endemic in rabbits from Majorca or it has been introduced is unknown. Game managers are encouraged to be aware of introducing sarcoptic mange during rabbit translocations.

     

Is the wild rabbit (<Emphasis Type="Italic">Oryctolagus cuniculus</Emphasis>) a threatened species in spain? Sociological constraints in the conservation of species

The Wild rabbit (Oryctolagus cuniculus) is an endemic species of the Iberian Peninsula and is essential for the conservation of endangered predators. Rabbits are also of high importance as a hunting species. From 1988, rabbits suffered the severe effects of rabbit hemorrhagic disease, which caused large declines in most populations. Despite this fact, the National Red Data Lists continued to classify rabbits as a “Least Concern” species. We used available hunting bag data from 1973 to 2002 to model national trends of rabbit abundance and to evaluate the conservation status according to the criteria of the National Red Data List and the World Conservation Union (IUCN). Generalized Additive Models were used as the statistical framework. The rabbit population of Spain suffered a large decline of about 71% between 1973 and 1993. This decline was 49% in the period 1980–1990. Based on both Spanish and World Conservation Union criteria, rabbits should be listed as ‘Vulnerable’, which demands a Conservation Plan Program. We suggest that the lack of concordance between the best available evidence and the conservation status of the species is a consequence of sociological constraints in conservation decisions. Rabbit conservation could face strong opposition from important socio-economic lobby groups (hunters and farmers). As such, governments and researchers may prefer to exclude rabbits from any status category requiring conservation action, despite the evidence of decline. We call for the urgent development of a nation-wide conservation program for rabbits which includes both socioeconomic constraints and the available biological data on population trends.     

Feeding responses of the red fox (<Emphasis Type="Italic">Vulpes vulpes</Emphasis>) to different wild rabbit (<Emphasis Type="Italic">Oryctolagus cuniculus</Emphasis>) densities: a regional approach

We investigate the feeding responses of the red fox (Vulpes vulpes) at a regional scale to different densities of European wild rabbit (Oryctolagus cuniculus) in central–southern Spain. Rabbit abundance indices were obtained in 86 localities during summer 2002. The diet of the fox was studied by analysis of 114 scats collected in 47 of these localities. The feeding response of the fox was examined by a representation of the dry weight percent of rabbit in the diet as a function of the abundance of rabbits; this used data only from those localities where at least 3 scats were collected (70 fox scats from 18 localities). We evaluated the relationship between rabbit abundance and the diversity of the diet of the fox. The feeding patterns of red foxes approximated to Holling’s type III functional response, typical of opportunistic predators. There was a negative relationship between the diversity of the fox’s diet and the abundance of rabbits. Therefore, the fox apparently behaves as a facultative predator, feeding on rabbits when they are abundant and shifting to other prey (and hence a more diverse diet) when rabbits are scarce. These findings are the first step towards understanding the potential role of red foxes in regulating rabbit populations in central–southern Spain.     

Is the interaction between rabbit hemorrhagic disease and hyperpredation by raptors a major cause of the red-legged partridge decline in Spain?

Hyperpredation can be described as a restrictive case of apparent competition where an increased number of primary prey species indirectly induces the decrease of the secondary prey species through numerical response of predators to the primary prey dynamics. It has been proposed that rabbit hemorrhagic disease (RHD), which decimated populations of European wild rabbit (Oryctolagus cuniculus) in Spain, led to prey switching by raptors towards red-legged partridges (Alectoris rufa) causing declines in their populations as a peculiar case of hyperpredation.     

European rabbit population trends and associated factors: a review of the situation in the Iberian Peninsula

• 1 European rabbits are considered a keystone species in the Iberian Peninsula. Their populations have sharply declined over the past century, mainly due to habitat loss and the arrival of two viral diseases: myxomatosis in the 1950s and rabbit haemorrhagic disease (RHD) at the end of the 1980s. For the conservation of the Iberian Mediterranean ecosystem, it is important to determine whether rabbit populations are recovering two decades after the RHD outbreak, and to identify the factors associated with population recovery.
• 2 Here, we review the current knowledge on recent rabbit population trends in the Iberian Peninsula and the factors associated with these trends.
• 3 Although most rabbit populations are still declining in the Iberian Peninsula, a few seem to have recovered. In general, positive trends have been recorded in species‐friendly habitats characterized by non‐fragmented landscapes, interspersed patches of Mediterranean scrubland, good pastures and/or crops, soft soils that are suitable for warren construction and a Mediterranean climate with relatively high rainfall. Additionally, rabbits seem to be recovering better in areas where management practices (e.g. low hunting pressure, habitat management and predator control) are applied to increase their numbers.
• 4 From these findings, it is possible to identify five broad objectives for rabbit conservation in the Iberian Peninsula. First, it is clearly necessary to establish a long‐term programme for monitoring rabbit abundance and trends on a large scale. Second, the conservation and restoration of open Mediterranean scrubland should be a priority for stabilizing and maintaining existing healthy rabbit populations. Third, despite the lack of experimental evidence, management activities aimed at increasing the quantity and quality of both refuge and food should continue to be implemented. Fourth, legislation on the timing of the hunting season should be revisited following recommendations made by scientists. Finally, experimental approaches are required to investigate whether the control of generalist predators is a successful strategy to allow rabbit populations to recover.

     

Habitat management as a generalized tool to boost European rabbit Oryctolagus cuniculus populations in the Iberian Peninsula: a cost‐effectiveness analysis

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Population and conservation genetics of the gopher tortoise (<Emphasis Type="Italic">Gopherus polyphemus</Emphasis>)

The gopher tortoise (Gopherus polyphemus) is an important member of the sandhill, longleaf pine, and scrub ecosystems in the southeastern United States. Even though it is currently protected throughout its range, tortoise populations continue to decline. We assessed genetic diversity at nine microsatellite loci in 300 individuals from 21 locations throughout Florida and southern Georgia. Tortoise populations are clearly subdivided into at least eight genetic assemblages with an . Furthermore, we found indications of anthropogenic effects in the form of population bottlenecks in five populations and putative admixture in four. From these data, we recommend that the populations be managed to maintain existing genetic structure without further isolation of populations and the establishment of a holistic␣database to include genetic and demographic information useful for relocation and management purposes.     

Identification of conservation units in the European Mergus merganser based on nuclear and mitochondrial DNA markers

The conservation status of small breeding areas of the Goosander (Mergus merganser merganser) in Central Europe is unclear. Geographic isolation of these areas suggests restricted gene flow to and from large North-European populations. On the other hand, migrating Goosanders from northern Europe join the Central European breeding population for wintering. To evaluate the conservation status of the small breeding areas we assessed the genetic structure of M. merganser populations in Europe by examining two nuclear marker systems (microsatellites and Single Nucleotide Polymorphisms, SNP) and mitochondrial (mtDNA) control region sequence variation for Goosanders in 11 sampling areas representing three of five distinct breeding areas and two subspecies (M. m. merganser and M. m. americanus). Overall population differentiation estimates including both subspecies were high, both based on mtDNA () and nuclear markers (θ _ST = 0.219; 95% CI 0.088–0.398, SNP and microsatellites combined). Within Europe, mtDNA revealed a strong overall () and significant pairwise population differentiation between almost all comparisons. In contrast, both nuclear marker systems combined revealed only a small overall genetic differentiation (θ _ST = 0.022; 95% CI 0.003–0.041). The strong genetic differentiation based on female-inherited mtDNA but not on biparentally inherited nuclear markers can be explained by sex-biased dispersal and strong female philopatry. Therefore, small breeding areas in Europe are endangered despite large male-mediated gene-flow, because when these populations decline, only males—but due to strong philopatry not females—can be efficiently supplemented by migration from the large North European populations. We therefore propose to manage the small breeding areas independently and to strengthen conservation efforts for this species in Central Europe.     

Modelling habitat use by Iberian hare <Emphasis Type="Italic">Lepus granatensis</Emphasis> and European wild rabbit <Emphasis Type="Italic">Oryctolagus cuniculus</Emphasis> in a mountainous area in northwestern Spain

We developed broad-scale habitat use models for the distribution of the Iberian hare Lepus granatensis Rosenhaeur, 1856 and the relative abundance of the European wild rabbit Oryctolagus cuniculus (Linnaeus, 1758) in a mountainous area in north-western Spain, the Baixa Limia Site of Community Importance (SCI). For the Iberian hare, the most parsimonious model included average altitude, average slope, scrub-pasture area and length of border between scrublands and forests. Four variables were consequential, 2 of them with a positive sign for the presence of the hare (average altitude and scrubland area) and 2 with a negative one (average slope and length of border between scrubland and forest). For the European wild rabbit the most parsimonious General Linear model obtained included average altitude and scrub-forest edge. Only 2 predictors were consequential, both with a negative sign on the relative abundance of wild rabbits: the average altitude and length of border between scrubland and forest. The models obtained indicated the need of management actions to favour open habitats with suitable vegetation structure, avoiding extensive reforestation. A revision of the current hunting plans in the protected area of Baixa Limia is required.     

A bias correction for estimates of effective population size based on linkage disequilibrium at unlinked gene loci*

Analysis of linkage disequilibrium (=mean squared correlation of allele frequencies at different gene loci) provides a means of estimating effective population size (N _e) from a single sample, but this method has seen much less use than the temporal method (which requires at least two samples). It is shown that for realistic numbers of loci and alleles, the linkage disequilibrium method can provide precision comparable to that of the temporal method. However, computer simulations show that estimates of N _e based on for unlinked, diallelic gene loci are sharply biased downwards ( in some cases) if sample size (S) is less than true N _e. The bias is shown to arise from inaccuracies in published formula for when S and/or N _e are small. Empirically derived modifications to for two mating systems (random mating and lifetime monogamy) effectively eliminate the bias (residual bias in % in most cases). The modified method also performs well in estimating N _e in non-ideal populations with skewed sex ratio or non-random variance in reproductive success. Recent population declines are not likely to seriously affect , but if N has recently increased from a bottleneck can be biased downwards for a few generations. These results should facilitate application of the disequilibrium method for estimating contemporary N _e in natural populations. However, a comprehensive assessment of performance of with highly polymorphic markers such as microsatellites is needed.The US Governmentȁ9s right to retain a non-exclusive, royalty-free license in and to any copyright is acknowledged.     

Population genetics of <Emphasis Type="Italic">Collisella subrugosa</Emphasis> (Patellogastropoda: Acmaeidae): evidence of two scales of population structure

Marine invertebrate populations usually show high levels of genetic variability that has frequently been associated with spatial and temporal environmental heterogeneity. One of the most heterogeneous marine environments is the intertidal zone, the habitat of Collisella subrugosa, the most widespread and abundant Brazilian limpet. C. subrugosa has planktonic larvae that can disperse over long distances, what can promote gene flow among shores, working against interpopulational differentiation. In this study we investigated the genetic variability and populational substructure of C. subrugosa through analysis of 24 allozyme loci in 14 samples (590 individuals) collected along 2,700 km of the Brazilian coast. The genetic variability was high ( and ), as expected for intertidal species. Genetic differentiation among samples was low (F _ST = 0.03) what may reflect intensive gene flow associated with larval dispersal. However, we detected an isolation-by-distance pattern of population substructure in one sampled region. High levels of heterozygote deficiency were also observed for many loci in each sample. Alternative hypothesis are discussed, and the “breeding groups” is suggested to explain these pattern, indicating the main cause as environmental heterogeneity.     

Effects of weather and hunting on wild reindeer population dynamics in Hardangervidda National Park

Wild reindeer have a range that extends across the circumpolar region. In the last few decades, however, populations of wild reindeer have been on the decline. The reasons for these declines are poorly understood, but are suggested to be linked to both local and global climatic factors, disease, and human interference. Hardangervidda plateau in Norway is home to the largest wild reindeer population in Europe, and is at the southern end of its European range. This population is therefore of particular importance, particularly in the light of climate change. We investigated how weather and hunting have affected the wild reindeer population in Hardangervidda over the last two decades. Our findings suggest that the wild reindeer population in Hardangervidda is most affected by winter temperature and hunting, where colder temperatures and lower harvest rates typically result in higher growth rates. We did not find significant evidence for linear density dependence. Our results show trends across Hardangervidda, and give an indication of how region-wide weather and hunting pressure can affect the wild reindeer population. As new data emerge, future investigations should look into the existence and nature of density dependence and the influence of other weather and human disturbance related factors.     

Threshold Conditions for a Non-Autonomous Epidemic System Describing the Population Dynamics of Dengue

A non-autonomous dynamical system, in which the seasonal variation of a mosquito vector population is modeled, is proposed to investigate dengue overwintering. A time-dependent threshold, R(t), is deduced such that when its yearly average, denoted by , is less than 1, the disease does not invade the populations and when is greater than 1 it does. By not invading the population we mean that the number of infected individuals always decrease in subsequent seasons of transmission. Using the same threshold, all the qualitative features of the resulting epidemic can be understood. Our model suggests that trans-ovarial infection in the mosquitoes facilitates dengue overwintering. We also explain the delay between the peak in the mosquitoes population and the peak in dengue cases. An erratum to this article can be found at     

Stochastic gene expression in switching environments

Organisms are known to adapt to regularly varying environments. However, in most cases, the fluctuations of the environment are irregular and stochastic, alternating between favorable and unfavorable regimes, so that cells must cope with an uncertain future. A possible response is population diversification. We assume here that the cell population is divided into two groups, corresponding to two phenotypes, having distinct growth rates, and that cells can switch randomly their phenotypes. In static environments, the net growth rate is maximized when the population is homogeneously composed of cells having the largest growth rate. In random environments, growth rates fluctuate and observations reveal that sometimes heterogeneous populations have a larger net growth rate than homogeneous ones, a fact illustrated recently through Monte-Carlo simulations based on a birth and migration process in a random environment. We study this process mathematically by focusing on the proportion f(t) of cells having the largest growth rate at time t, and give explicitly the related steady state distribution π. We also prove the convergence of empirical averages along trajectories to the first moment , and provide efficient numerical methods for computing .      

Admixture between released and wild game birds: a changing genetic landscape in European mallards (<Emphasis Type="Italic">Anas platyrhynchos</Emphasis>)

Disruption of naturally evolved spatial patterns of genetic variation and local adaptations is a growing concern in wildlife management and conservation. During the last decade, releases of native taxa with potentially non-native genotypes have received increased attention. This has mostly concerned conservation programs, but releases are also widely carried out to boost harvest opportunities. The mallard, Anas platyrhynchos, is one of few terrestrial migratory vertebrates subjected to large-scale releases for hunting purposes. It is the most numerous and widespread duck in the world, yet each year more than three million farmed mallard ducklings are released into the wild in the European Union alone to increase the harvestable population. This study aimed to determine the genetic effects of such large-scale releases of a native species, specifically if wild and released farmed mallards differ genetically among subpopulations in Europe, if there are signs of admixture between the two groups, if the genetic structure of the wild mallard population has changed since large-scale releases began in the 1970s, and if the current data matches global patterns across the Northern hemisphere. We used Bayesian clustering (Structure software) and Discriminant Analysis of Principal Components (DAPC) to analyze the genetic structure of historical and present-day wild (n?=?171 and n?=?209, respectively) as well as farmed (n?=?211) mallards from six European countries as inferred by 360 single-nucleotide polymorphisms (SNPs). Both methods showed a clear genetic differentiation between wild and farmed mallards. Admixed individuals were found in the present-day wild population, implicating introgression of farmed genotypes into wild mallards despite low survival among released farmed mallards. Such cryptic introgression would alter the genetic composition of wild populations and may have unknown long-term consequences for conservation.     

Sources of variability in spotted owl population growth rate: testing predictions using long-term mark–recapture data

For long-lived iteroparous vertebrates that annually produce few young, life history theory predicts that reproductive output (R) and juvenile survival should influence temporal variation in population growth rate (λ) more than adult survival does. We examined this general prediction using 15 years of mark–recapture data from a population of California spotted owls (Strix occidentalis occidentalis). We found that survival of individuals ≥1 year old (ϕ) exhibited much less temporal variability , where CV is coefficient of variation, than R and that R was strongly influenced by environmental stochasticity. Although λ was most sensitive ( ; log-transformed sensitivity) to ϕ and much less sensitive to either R or juvenile survival (survival rate of owls from fledging to 1 year old; ), we estimated that R contributed as much as ϕ to the observed annual variability in λ. The contribution of juvenile survival to variability in λ was proportional to its These results are consistent with the hypothesis that natural selection may have favored the evolution of longevity in spotted owls as a strategy to increase the probability of experiencing favorable years for reproduction. Our finding that annual weather patterns that most affected R (temperature and precipitation during incubation) and ϕ (conditions during winter related to the Southern Oscillation Index) were equally good at explaining temporal variability in λ supports the conclusion that R and ϕ were equally responsible for variability in λ. Although currently accepted conservation measures for spotted owl populations attempt to enhance survival, our results indicated that conservation measures that target R may be as successful, as long as actions do not reduce ϕ.     

Status of the regal fritillary (<Emphasis Type="Italic">Speyeria idalia</Emphasis>) and effects of fire management on its abundance in northeastern Kansas,USA

The Regal Fritillary (Speyeria idalia), which once occupied prairies and meadows in North America from the upper Great Plains to the Atlantic coast, has disappeared in recent decades from nearly the entirety of the eastern half of its range and has declined westward. In the Great Plains, where the species is limited to native prairie remnants, several large populations are thought to exist, but patterns of occurrence and abundance in the region have not been described in detail. We surveyed prairies within a three county area of northeastern Kansas using distance-sampling along line transects and found Regal Fritillaries present at 70 of 87 sites. Population density varied considerably among sites but was generally much higher at those that had not been burned in the past year. Despite the loss of >99% of its original prairie landcover and the small sizes of remnants we estimate that our study area supports a globally significant population of ∼12,000 adult individuals. Given the rapidity of decline of Regal Fritillary populations elsewhere, this study establishes important population benchmarks and a practical protocol for future monitoring efforts.