Saving Europe’s threatened flora: progress towards GSPC Target 8 in Europe

The European flora is of global significance but many species are facing an ever increasing range of threats, especially the growing impacts of climate change. While various estimates have been made for the number of threatened plant species in Europe, an up-to-date European plant Red List does not presently exist. Target 8 of the Global Strategy for Plant Conservation (GSPC) calls for 60% of threatened plant species to be conserved in ex situ collections by 2010. In the absence of a European plant Red List, it is difficult to monitor progress at the regional level towards this target. To address this gap Botanic Gardens Conservation International (BGCI) has developed a consolidated list of European threatened species as a step towards a formal Red List. The database consists of national Red List data from 28 European countries and includes records for over 11,000 taxa. National Red List data were supplemented by information on the critically endangered plants of Europe provided by the Museum National d’Histoire Naturelle/European Topic Centre on Biological Diversity and the Conservatoire Botanique National de Brest. A list of regionally threatened species was extracted from the database and screened against BGCI’s database of plants in cultivation in botanic gardens (PlantSearch) and ENSCONET’s (European Native Seed Conservation Network) database of plants conserved in European seed banks. This analysis revealed that 42% of European threatened species are currently included in ex situ conservation programmes in Europe.     

Butterfly monitoring in Europe: methods,applications and perspectives

Since the first Butterfly Monitoring Scheme in the UK started in the mid-1970s, butterfly monitoring in Europe has developed in more than ten European countries. These schemes are aimed to assess regional and national trends in butterfly abundance per species. We discuss strengths and weaknesses of methods used in these schemes and give examples of applications of the data. A new development is to establish supra-national trends per species and multispecies indicators. Such indicators enable to report against the target to halt biodiversity loss by 2010. Our preliminary European Grassland Butterfly Indicator shows a decline of 50% between 1990 and 2005. We expect to develop a Grassland Butterfly Indicator with an improved coverage across European countries. We see also good perspectives to develop a supra-national indicator for climate change as well as an indicator for woodland butterflies.     

Historical demography of common carp estimated from individuals collected from various parts of the world using the pairwise sequentially markovian coalescent approach

The inference of historical demography of a species is helpful for understanding species’ differentiation and its population dynamics. However, such inference has been previously difficult due to the lack of proper analytical methods and availability of genetic data. A recently developed method called Pairwise Sequentially Markovian Coalescent (PSMC) offers the capability for estimation of the trajectories of historical populations over considerable time periods using genomic sequences. In this study, we applied this approach to infer the historical demography of the common carp using samples collected from Europe, Asia and the Americas. Comparison between Asian and European common carp populations showed that the last glacial period starting 100 ka BP likely caused a significant decline in population size of the wild common carp in Europe, while it did not have much of an impact on its counterparts in Asia. This was probably caused by differences in glacial activities in East Asia and Europe, and suggesting a separation of the European and Asian clades before the last glacial maximum. The North American clade which is an invasive population shared a similar demographic history as those from Europe, consistent with the idea that the North American common carp probably had European ancestral origins. Our analysis represents the first reconstruction of the historical population demography of the common carp, which is important to elucidate the separation of European and Asian common carp clades during the Quaternary glaciation, as well as the dispersal of common carp across the world.     

Assessing the ecological risk posed by a recently established invasive alien predator: <Emphasis Type="Italic">Harmonia axyridis</Emphasis> as a case study

Invasive alien predators are a serious threat to biodiversity worldwide. However, there is no generic method for assessing which local species are most at risk following the invasion of a new predator. The harlequin ladybird, Harmonia axyridis (Pallas) (Coleoptera: Coccinellidae), is an alien in Europe and many other parts of the world where it affects other species of ladybirds through competition for food and intra-guild predation (IGP). Here, we describe a method developed to assess which European ladybird species are most at risk following the invasion of H. axyridis. The three components of the risk assessment are: the likelihood that the assessed native species encounters H. axyridis in the field, the hazard of competition for food, and the IGP hazard. Thirty native European ladybird species were assessed through data obtained from field observations, laboratory experiments and literature reviews. The species that are considered most at risk are found on deciduous trees, have immature stages which are highly vulnerable to IGP by H. axyridis, and are primarily aphidophagous. These species should be the focus of specific studies and possibly conservation actions. The risk assessment method proposed here could be applied to other alien predators which are considered a threat to native species through competition and predation.     

Modelling the dynamics of invasion and control of competing green crab genotypes

Establishment of invasive species is a worldwide problem. In many jurisdictions, management strategies are being developed in an attempt to reduce the environmental and economic harm these species may cause in the receiving ecosystem. Scientific studies to improve understanding of the mechanisms behind invasive species population growth and spread are key components in the development of control methods. The work presented herein is motivated by the case of the European green crab (Carcinus maenas L.), a remarkably adaptable organism that has invaded marine coastal waters around the globe. Two genotypes of European green crab have independently invaded the Atlantic coast of Canada. One genotype invaded the mid-Atlantic coast of the USA by 1817, subsequently spreading northward through New England and reaching Atlantic Canada by 1951. A second genotype, originating from the northern limit of the green crabs European range, invaded the Atlantic coast of Nova Scotia in the 1980s and is spreading southward from the Canadian Maritime provinces. We developed an integrodifference equation model for green crab population growth, competition and spread, and demonstrate that it yields appropriate spread rates for the two genotypes, based on historical data. Analysis of our model indicates that while harvesting efforts have the benefit of reducing green crab density and slowing the spread rate of the two genotypes, elimination of the green crab is virtually impossible with harvesting alone. Accordingly, a green crab fishery would be sustainable. We also demonstrate that with harvesting and restocking, the competitive imbalance between the Northern and Southern green crab genotypes can be reversed. That is, a competitively inferior species can be used to control a competitively superior one.     

Indexing European bird population trends using results of national monitoring schemes: a trial of a new method

Many European countries have annual breeding bird monitoring schemes based on nationwide samples; most are in northern and western Europe. We have developed a method to produce yearly population indices of bird species across countries by combining the results of existing national schemes. The method takes into account the differences in population sizes per country, as well as the differences in field methods, and the numbers of sites and years covered by the national schemes. In order to test the method, we collected raw data from a number of countries and applied an index method to produce scheme results per country. Data were collected for five farmland species (Lapwing Vanellus vanellus, Linnet Carduelis cannabina, Skylark Alauda arvensis, Whitethroat Sylvia communis and Yellowhammer Emberiza citrinella), from seven countries (UK, Netherlands, Denmark, Germany, Finland, Latvia and Estonia) for a 20-year period (1978–97). The trial demonstrated that it was possible to combine national indices to provide supra-national yearly totals and their standard errors; the results were similar to those produced when the raw data were used. Thus, yearly European indices can be produced by exchanging only limited amounts of information, that is the national yearly indices of each species or, preferably, the yearly population numbers and their standard errors. At a European scale, the populations of the five species selected have changed considerably. In western Europe (UK, Netherlands, Denmark and former West Germany combined), Linnet, Skylark and Yellowhammer have declined and Whitethroat has increased. Most changes occurred during the first ten-year period (1978–88). The changes in eastern Europe (the remaining countries) were less clear, in part because the statistical power of the national schemes is as yet limited.     

Molecular phylogeny of Acipenserinae and black caviar species identification.

The first phylogenetic tree for the Acipenserinae based on the combined sequence data for fragments of three mitochondrial genes, the cytochrome b (650 bp) gene, 12S (150 bp) and 16S (350 bp) rRNA genes is described. Three general conclusions are inferred from the tree: 1) Scaphirhynchus albus is the sister-species of all Acipenser and Huso species; 2) The two species of Huso are embedded within the genus Acipenser. Therefore, the genus Huso is not a separate taxonomic unit; and 3) There are three main clades within Acipenser: (a) A. sturio-A. oxyrinchus, (b) A. schrenckii-A. transmontanus, and (c) all Ponto-Caspian species plus A. dabryanus and A. brevirostrum. A method based on the identification of diagnostic nucleotide positions in the cytochrome b gene was developed and used to survey the United States and European caviar markets. The survey of 95 lots of caviar obtained at the American market suggests that in December 1995 and April 1996 17% of the designations made by caviar suppliers were mislabeled with respect to species identification. In December of 1996, this figure jumped to 32%. The main commercially harvested species (Huso huso, A. stellatus, A. gueldenstaedtii, A. schrenckii, and H. dauricus), as well as A. nudiventris, A. persicus, and A. baerii are threatened due to the increased demand of the international caviar market.     

Determination of national conservation responsibilities for species conservation in regions with multiple political jurisdictions

The Convention on Biodiversity (CBD) commits its signatories to the identification and monitoring of biodiversity. The European Union has implemented this commitment into its legislation. Despite the legal requirement resources are scarce, requiring a prioritization of conservation actions, including e.g. monitoring. Red lists are currently the most prominent tool for priority setting in applied conservation, despite the fact that they were not developed for that purpose. Therefore, it is hardly surprising that they do not always reflect actual conservation needs. As a response, the concept of national responsibility as a complementary tool was developed during the last two decades. The existing methods are country specific and mainly incomparable on an international scale. Here, we present a newly developed method, which is applicable to any taxonomic group, adjustable to different geographic scales, with little data requirements and clear categorizations. We apply the new method to over 1,000 species in several countries of different size and report on the applicability of our method and discuss problems that derive from the currently available data. Our method has several major advantages compared to currently available methods. It is applicable to any geographic range, allows automatization, given database availability, and is readily adjustable to future data improvements. It further has comparably low data demands by exploiting one of the most commonly available information on biodiversity, i.e. distribution maps. We believe that our method allows the allocation of the limited resources in nature conservation in the most sensible way, e.g. the sharing of monitoring duties, effectively selecting networks of protected areas, improving knowledge on biodiversity, and closing information gaps in many species groups.     

Analysing the content of the European Ocean Biogeographic Information System (EurOBIS): available data, limitations, prospects and a look at the future

The European Ocean Biogeographic Information System—EurOBIS—is an integrated data system developed by the Flanders Marine Institute (VLIZ) for the EU Network of Excellence “Marine Biodiversity and Ecosystem Functioning” (MarBEF) in 2004. Its principle aims are to centralise the largely scattered biogeographical data on marine species collected by European institutions and to make these quality-controlled data freely available and easily accessible. It is in essence a distributed system in which individual datasets go through a series of quality control procedures before they are integrated into one large consolidated database. EurOBIS is freely available online at , where marine biogeographical data—with a focus on taxonomy, temporal and spatial distribution—can be consulted and downloaded for analyses. Over the last 6 years, EurOBIS has collected 228 datasets contributed by more than 75 institutes, representing over 13.6 million distribution records of which almost 12.5 million records are species level identifications. It is now the largest online searchable public source of European marine biological data, holding biogeographical information on 26,801 species and 9,221 genera. EurOBIS acts as the European node of OBIS, the Ocean Biogeographic Information System of the Census of Marine Life (CoML). EurOBIS shares its data with OBIS, which in its turn shares its content with the Global Biodiversity Information Facility (GBIF). This article describes the status of the European Ocean Biogeographic Information System, identifies data gaps, possible applications, uses and limitations. It also formulates a strategy for the growth and improvement of the system and wants to appeal for more contributions.     

Distribution of phenolic compounds in Middleeuropean taxa of the Achillea millefolium L. aggregate

Achillea millefolium L. s.l. is a cytogenetically, morphologically, and chemically polymorphic aggregate. Besides the sesquiterpenes that possess chemotaxonomic relevance and mediate the antiphlogistic activity, the plant contains phenolic compounds such as dicaffeoylquinic acids and flavonoids causing choleretic and spasmolytic effects. To evaluate their contribution to the chemotaxonomy of European taxa of the A. millefolium group, we developed a SPE-HPLC/UV method that allows quantification of the phenolic constituents in the different taxa. The investigated species displayed differences in the quantitative and qualitative composition of phenolic acids and flavonoids. Hence, they seem to be of chemotaxonomic significance, especially for the distinction of the diploid taxa. Combining the obtained results with the data of the sesquiterpene analyses gives a comprehensive insight into the distribution of those pharmacologically relevant plant constituents in the A. millefolium group.     

Molecular survey of genetic diversity in the endangered European mink Mustela lutreola

The European mink Mustela lutreola is regarded as one of the most endangered mammals in the world. We chose to characterize microsatellite loci in order to investigate the pattern of decline of this species. We used primer pairs developed for a related species Mustela vison to genotype individual of Mustela lutreola. Out of 19 primer pairs used 8 were useful for our purpose. The conservation of primer sequence point out the problem of neutrality of some microsatellite loci as this conservation could be related to strong selection pressure on those loci. Finally we present the first data allowing an estimation of heterozygosity of French population of European mink.     

First steps in the Central-Baltic intercalibration exercise on lake macrophytes: where do we start?

The Water Framework Directive (WFD 2000) defines macrophytes as one of the biological groups required for the ecological assessment of European surface waters. Several indices for macrophyte assessment have been proposed or are currently in use by different European states. As a first step towards performing an intercalibration of these indices a common dataset was developed. This dataset contains abundance data on 789 macrophyte species from 316 different lake sites in ten European countries. Various common species and genera were identified as indicators of reference and impacted conditions within the dataset. Cluster analysis of macrophyte data, supported by non-metric multidimensional scaling, indicated that clusters formed were more reflective of their source country rather than lake type. This might be caused by differences in regional climate, biogeography, monitoring techniques, or a combination of these factors. A total of six national indices were applied to assign quality classes to the lakes. However, this produced results that often differed by one or two quality classes for the same site. We foresee that a more precise intercalibration exercise is necessary, and it should be based on more detailed data considering both seasonality and the latitudinal differences within the area covered.     

Microsatellite variability in apricots (<Emphasis Type="Italic">Prunus armeniaca</Emphasis> L.) reflects their geographic origin and breeding history

A collection of 133 apricot cultivars and three related species originating from different geographical regions were studied with 10 polymorphic microsatellite markers developed in apricot. Altogether, 133 alleles were identified in the set of accessions, with an average of 13.30 alleles per locus. Out of them, 32 alleles occurred only once in the investigated samples, especially in apricots originating from different eco-geographic groups or in different species. The observed heterozygosity for individual loci ranged from 0.8636 to 0.3182, with an average of 0.6281. An unweighted pair group method with arithmetic mean dendrogram based on Nei's genetic distance grouped the accessions according to their eco-geographical origin and/or their pedigree information. Central Asian cultivars have a distinct position on the dendrogram, which supports the assumption that most cultivars have an Asian ancestor. Most East European cultivars analysed cluster together, and the data even revealed a few synonyms. Results show that American cultivars have not only European germ plasm in their pedigree, but they have also been enriched with germ plasm of Asian origin. The implications of these data for the use of simple sequence repeat (SSR) markers as a tool for fingerprinting cultivars in breeders' rights protection and apricot breeding are discussed. In this paper, we demonstrate for the first time the variability of apricot SSRs in a large collection of apricot cultivars and closely related species.     

Using aquatic macrophyte community indices to define the ecological status of European lakes

Defining the overall ecological status of lakes according to the Water Framework Directive (WFD) is to be partially based on the species composition of the aquatic macrophyte community. We tested three assessment methods to define the ecological status of the macrophyte community in response to a eutrophication pressure as reflected by total phosphorus concentrations in lake water. An absolute species richness, a trophic index (TI) and a lake trophic ranking (LTR) method were tested at Europe-wide, regional and national scales as well as by alkalinity category, using data from 1,147 lakes from 12 European states. Total phosphorus data were used to represent the trophic status of individual samples and were plotted against the calculated TI and LTR values. Additionally, the LTR method was tested in some individual lakes with a relatively long time series of monitoring data. The TI correlated well with total P in the Northern European lake types, whereas the relationship in the Central European lake types was less clear. The relationship between total P and light extinction is often very good in the Northern European lake types compared to the Central European lake types. This can be one of the reasons for a better agreement between the indices and eutrophication pressure in the Northern European lake types. The response of individual lakes to changes in the abiotic environment was sometimes represented incorrectly by the indices used, which is a cause of concern for the use of single indices in status assessments in practice.     

Bayesian analysis of hybridization and introgression between the endangered european mink (Mustela lutreola) and the polecat (Mustela putorius)

Human-mediated global change will probably increase the rates of natural hybridization and genetic introgression between closely related species, and this will have major implications for conservation of the taxa involved. In this study, we analyse both mitochondrial and nuclear data to characterize ongoing hybridization and genetic introgression between two sympatric sister species of mustelids, the endangered European mink (Mustela lutreola) and the more abundant polecat (M. putorius). A total of 317 European mink, 114 polecats and 15 putative hybrid individuals were collected from different localities in Europe and genotyped with 13 microsatellite nuclear markers. Recently developed Bayesian methods for assigning individuals to populations and identifying admixture proportions were applied to the genetic data. To identify the direction of hybridization, we additionally sequenced mtDNA and Y chromosomes from 78 individuals and 29 males respectively. We found that both hybridization and genetic introgression occurred at low levels (3% and 0.9% respectively) and indicated that hybridization is asymmetric, as only pure polecat males mate with pure European mink females. Furthermore, backcrossing and genetic introgression was detected only from female first-generation (F1) hybrids of European mink to polecats. This latter result implies that Haldane's rule may apply. Our results suggest that hybridization and genetic introgression between the two species should be considered a rather uncommon event. However, the current low densities of European mink might be changing this trend.     

Adaptive latitudinal trends in the mandible shape of Apodemus wood mice

Aim Size and shape of the mandible are investigated across the latitudinal range of the European wood mouse (Apodemus sylvaticus), in order to address the relative importance of genetic structure, insularity, and geographical gradient in patterning morphological variation. Results are compared with those on two Asiatic species of wood mice, A. argenteus and A. speciosus. Location The European wood mouse is sampled by a set of trapping localities including both, islands and mainland populations, as well as the four genetic groups identified in previous studies. The localities cover a latitudinal gradient from 55° N to 36° N. Methods Different Fourier methods are applied to the outlines of mandibles and their results compared in the case of A. sylvaticus. All provide similar results and allow a quantification of the size and shape variations across the geographical range of the European wood mouse. Using the method allowing for the best reduction of the informative data set, a comparison of the European wood mouse with the two Asiatic species was performed. Results Within the European wood mouse A. sylvaticus, a strong latitudinal gradient in mandible shape overrides the influence of insularity and genetic structure. Yet, random morphological divergence in insular conditions can be identified as a secondary process of shape differentiation. Size displays no obvious pattern of variation, neither with insularity or latitude. A comparison with two other species of wood mice suggests that a similar latitudinal gradient in mandible shape exists in different species, mandibles being flatter in the north and wider in the south. Main conclusion The latitudinal gradient in mandible shape observed in the three species of wood mice is interpreted as an intraspecific adaptive response to gradual changes in feeding behaviour.     

The ectomycorrhizal fungus Amanita phalloides was introduced and is expanding its range on the west coast of North America

The deadly poisonous Amanita phalloides is common along the west coast of North America. Death cap mushrooms are especially abundant in habitats around the San Francisco Bay, California, but the species grows as far south as Los Angeles County and north to Vancouver Island, Canada. At different times, various authors have considered the species as either native or introduced, and the question of whether A. phalloides is an invasive species remains unanswered. We developed four novel loci and used these in combination with the EF1α and IGS loci to explore the phylogeography of the species. The data provide strong evidence for a European origin of North American populations. Genetic diversity is generally greater in European vs. North American populations, suggestive of a genetic bottleneck; polymorphic sites of at least two loci are only polymorphic within Europe although the number of individuals sampled from Europe was half the number sampled from North America. Endemic alleles are not a feature of North American populations, although alleles unique to different parts of Europe were common and were discovered in Scandinavian, mainland French, and Corsican individuals. Many of these endemic European haplotypes were found together at single sites in California. Early collections of A. phalloides dated prior to 1963 and annotated using sequences of the ITS locus proved to be different species of Amanita. The first Californian collections that we confirmed as A. phalloides were made from the Del Monte Hotel (now the Naval Postgraduate School) in Monterey, and on the campus of the University of California, Berkeley, in 1938 and in 1945. These historical data are used in combination with data on A. phalloides’ current distribution to estimate a rate of spread for A. phalloides in California. Many species of ectomycorrhizal (EM) fungi have been introduced across and among continents, but with this evidence, the death cap becomes the only known invasive EM fungus in North America.     

Dating of non-oak species in the United Kingdom historical buildings archive using stable oxygen isotopes

Stable oxygen isotope dendrochronology is an effective precision-dating method for fast grown, invariant (complacent) tree-rings and for trees growing in moist, temperate climatic regions where growth may not be strongly controlled by climate. The method works because trees preserve a strong common isotopic signal, from summer precipitation, and therefore do not need to be physiologically stressed to record a dating signal. This study explores the working hypothesis that whilst tree species may differ in their eco-physiology, leaf morphology and wood anatomy they will record an isotopic signal in their growth rings that is sufficiently similar to enable their precise dating against isotopic reference chronologies developed using dated oak tree rings from the same region. Modern and historical samples from six species (sweet chestnut, English elm, ash, alder, European beech and black poplar) were analysed and their oxygen isotopic variability was compared against an oak master chronology previously developed for central southern England. Whilst differences in the relative strength of the agreement between the different species and the master chronology are apparent, the potential for interspecies dating is demonstrated convincingly. The ability to date non-oak species using stable oxygen isotopes opens-up new opportunities for science-based archaeology and will improve understanding of a largely-unexplored, but significant part of the European historical buildings archive.     

GIS interpolations of witness tree records (1839–1866) for northern Wisconsin at multiple scales

To construct forest landscape of pre‐European settlement periods, we developed a GIS interpolation approach to convert witness tree records of the U.S. General Land Office (GLO) survey from point to polygon data, which better described continuously distributed vegetation. The witness tree records (1839–1866) were processed for a 3‐million ha landscape in northern Wisconsin, U.S.A. at different scales. We provided implications of processing results at each scale. Compared with traditional GLO mapping that has fixed mapping scales and generalized classifications, our approach allows presettlement forest landscapes to be analysed at the individual species level and reconstructed under various classifications. We calculated vegetation indices including relative density, dominance, and importance value for each species, and quantitatively described the possible outcomes when GLO records are analysed at three different scales (resolution). The 1 × 1‐section resolution preserved spatial information but derived the most conservative estimates of species distributions measured in percentage area, which increased at coarser resolutions. Such increases under the 2 × 2‐section resolution were in the order of three to four times for the least common species, two to three times for the medium to most common species, and one to two times for the most common or highly contagious species. We mapped the distributions of hemlock and sugar maple from the pre‐European settlement period based on their witness tree locations and reconstructed presettlement forest landscapes based on species importance values derived for all species. The results provide a unique basis to further study land cover changes occurring after European settlement.     

A radioreceptor assay for pharmaceutical preparations of insulin

A radioreceptor assay has been developed that is suitable for the measurement of the potency of crystalline insulin and pharmaceutical insulin formulations. It utilizes the well characterized and widely available IM-9 human lymphocyte cell line as the source of receptor. Bovine, porcine and human crystalline and formulated insulins have been assayed against the 4th International and European Standards for Insulin and the potencies compared with those obtained by the mouse blood glucose method. Results with bovine insulin were in full correspondence with the in vivo results. Porcine and human insulins were 15-20% more potent by the radioreceptor assay than by the in vivo method when the mixed bovine and porcine insulin 4th International and European Standards were used, but were equivalent when compared with like materials. Average 95% confidence limits for formulated insulins in two assays were +/- 6% of the mean. The coefficient of variation on repeated assay of the same sample was 3.8%. The three dose parallel line radioreceptor assay with appropriate species species standards is a candidate biological test capable of international adoption as an alternative to in vivo animal testing of insulin.