A molecular phylogeny of anseriformes based on mitochondrial DNA analysis

To study the phylogenetic relationships among Anseriformes, sequences for the complete mitochondrial control region (CR) were determined from 45 waterfowl representing 24 genera, i.e., half of the existing genera. To confirm the results based on CR analysis we also analyzed representative species based on two mitochondrial protein-coding genes, cytochrome b (cytb) and NADH dehydrogenase subunit 2 (ND2). These data allowed us to construct a robust phylogeny of the Anseriformes and to compare it with existing phylogenies based on morphological or molecular data. Chauna and Dendrocygna were identified as early offshoots of the Anseriformes. All the remaining taxa fell into two clades that correspond to the two subfamilies Anatinae and Anserinae. Within Anserinae Branta and Anser cluster together, whereas Coscoroba, Cygnus, and Cereopsis form a relatively weak clade with Cygnus diverging first. Five clades are clearly recognizable among Anatinae: (i) the Anatini with Anas and Lophonetta; (ii) the Aythyini with Aythya and Netta; (iii) the Cairinini with Cairina and Aix; (iv) the Mergini with Mergus, Bucephala, Melanitta, Callonetta, Somateria, and Clangula, and (v) the Tadornini with Tadorna, Chloephaga, and Alopochen. The Tadornini diverged early on from the Anatinae; then the Mergini and a large group that comprises the Anatini, Aythyini, Cairinini, and two isolated genera, Chenonetta and Marmaronetta, diverged. The phylogeny obtained with the control region appears more robust than the one obtained with mitochondrial protein-coding genes such as ND2 and cytb. This suggests that the CR is a powerful tool for bird phylogeny, not only at a small scale (i.e., relationships between species) but also at the family level. Whereas morphological analysis effectively resolved the split between Anatinae and Anserinae and the existence of some of the clades, the precise composition of the clades are different when morphological and molecular data are compared.     

The amino-acid sequence of Northern Mallard (Anas platyrhynchos platyrhynchos) hemoglobin

The complete amino-acid sequence of the major hemoglobin component (HbA) of the adult Northern Mallard (Anas platyrhynchos platyrhynchos) is presented. A minor component HbD was also detected but in low concentrations. The sequences of alpha A- and beta-chains were established by automatic Edman degradation on tryptic peptides and peptides obtained by specific chemical cleavages. The alignment of the peptides was performed by comparison with the alpha A- and beta-chains of Greylag Goose hemoglobin (Anser anser). Thereby an exchange of five positions in the alpha A-chains and three in the beta-chains was observed. No exchanges were found in the surroundings of the heme, in alpha 1 beta 2-contact points, or allosteric regulatory sites. In the alpha 1 beta 1-subunit interface one amino-acid residue in alpha A-chains and one in beta-chains are exchanged. By comparison with the amino-acid sequence derived from globin genes of Domestic Duck (Anas platyrhynchos), the alpha A-chains differ by two exchanges in the N-terminal region and the beta-chains by five exchanges the in C-terminal region. The comparison of the amino-acid sequence derived from alpha A-globin gene of the Moscovy Duck (Cairina moschata) and alpha A-chains of the Northern Mallard, shows only one replacement.     

A recent chicken repeat 1 retrotransposition confirms the Coscoroba-Cape Barren goose clade

Chicken repeat 1 (CR1) is a member of the non-long terminal repeat class of retrotransposons. We have isolated a truncated CR1 element within the third intron of the lactate dehydrogenase B gene of the coscoroba and the Cape Barren goose (Anseriformes; Coscoroba coscoroba, Cereopsis novaehollandiae). Because the element was absent in orthologous loci within mallard (Anas platyrhynchos), snow goose (Anser caerulescens), and tundra swan (Cygnus columbianus), it provides strong support to the recent novel proposal by Donne-Goussé et al. [Donne-Goussé, C., Laudet, V., H?nni, C., 2002. A molecular phylogeny of anseriformes based on mitochondrial DNA analysis. Mol. Phylogenet. Evol. 23, 339-356] that Cape Barren goose is the sister taxon to coscoroba. The time of insertion was approximately 10.5 Mya or less estimated from mitochondrial DNA sequence information. Because this is a recent event, the DNA sequence of this CR1 should be close to that existing at the time of its insertion. This is reflected by the consistency of several structural features expected in a new CR1 copy such as the unaltered flanking target site duplication and inverted repeats that lie 22 bp apart near the 3' end of the element. Hybridization experiments show that numerous copies of sequences closely related to the coscoroba CR1 element are dispersed throughout the genomes of tested Anseriformes, but none were detected in representatives of Galliformes and Struthioniformes.     

Fluoroacetamide (1081) oisoning in wild birds.

An outbreak of poisoning in four greylag geese (Anser anser) and 35-45 teal (Anas crecca) is described. Laboratory findings led to the conclusion that a wheat bait containing the rodenticide fluoracetamide (1081) caused the poisoning. Circumstantial evidence incriminated fluoracetamide as the cause of death in white-fronted geese (Anser albifrons), mallards (Anas platyrhynchos), and chukars (Alectoris chukar).     

Lead poisoning in wild waterfowl in Japan

We collected 430 harvested ducks (Anas sp. and Aythya sp.) from nine prefectures in Japan between 1994 and 1997. Fifteen (4%) of 363 birds harvested during and after hunting seasons had one lead pellet each in the proventriculus and gizzard. In addition, 32 (34%) of 93 swans (Cygnus sp.) and two of 14 geese (Anser sp.) found dead from various wetlands had lesions consistent with lead poisoning. One to nine swans suspected of having toxicosis from ingestion of lead shot were found dead each year. Twenty-seven (84%) of the 32 lead-exposured swans were found in Hokkaido Prefecture. We concluded that lead poisoning is still a serious threat to waterfowl in Japan and that there is considerable need for environmental improvement concerning this problem.     

Characterisation of a highly repeated DNA sequence from Mycobacterium bovis

Abstract We report characterisation of a novel repeat sequence from a Mycobacterium bovis genomic library. The highly repeated sequence belongs to a family consisting of a 24 base pair (bp) direct repeat (DR), that appears to be organized into clusters on the chromosome. We classify the 24-bp DR into the group of prokaryotic DNA repeats known as the interspersed repetitive sequence elements. The 24-bp DR will be of potential use as a DNA fingerprinting tool in epidemiological studies of M. bovis .     

Maternal transmission of mitochondrial DNA in ducks

Maternal transmission of mitochondrial DNA (mtDNA) has been studied in amphibians, insects and mammals, but little is known about mtDNA inheritance in the ovaripirous avian species. In this study, we have constructed the physical maps of mitochondrial genomes from two different genera of ducks (Cairina and Anas) and taken advantage of the availability of their hybrids to demonstrate that mtDNA is maternally inherited.     

北京鸭线粒体基因组全序列测定和分析

线粒体DNA作为遗传标记,已在家鸡(Gallus gallus)和家鹅(Anser anser)的研究中取得了重大进展,而对家鸭(Anas platyrhychos domesticus)的研究却很少.本研究参照近源物种线粒体基因组序列设计15对引物,通过PCR扩增、测序、拼接,获得北京鸭(A.platyrhychos)线粒体基因组全序列,初步分析其特点和各基因的定位.结果显示,北京鸭线粒体基因组全长16 604 bp,碱基组成为29.19%A、22.20%T、15.80%G、32.81%C,包含13个蛋白质编码基因、2个rRNA基因、22个tRNA基因和1个非编码控制区(D-loop),基因组成及排列顺序与其他鸟类相似.基于线粒体D-loop区全序列,用N-J法构建了7种雁形目鸟类系统进化树,结果表明,北京鸭与绿头鸭(A.platyrhychos)系统进化关系较近.     

西洞庭湖鸟类物种多样性分析

2003年7月~2005年6月,按月对西洞庭湖的鸟类资源进行调查,共记录到鸟类198种,分属11目39科。其中雀形目和鹳形目占有绝对优势,分别占鸟类群落组成的40.9%和32.8%。各科中,鸭科种类最多,有26种。候鸟134种,占总数的67.7%。豆雁、绿翅鸭、罗纹鸭等为优势种。记录到包括白鹤、白尾海雕、黑鹳、东方白鹳等4种属国家Ⅰ级重点保护物种和大天鹅等21种国家Ⅱ级重点保护物种。对各季度的个体数、物种数和物种多样性指数进行年动态分析表明,个体数和物种数的年动态总体上相似,因受候鸟的影响,季节性明显,物种多样性指数年动态则存在差异。     

家鸭粪便正常菌群的研究

本文应用常规好氧培养法和厌氧培养法,分析了不同日龄、性别及饲养条件下金定鸭粪便正常菌群的组成与变化情况,并同成年骡鸭、正番鸭、北京鸭和康贝尔鸭的粪便菌群做了比较。     

Generation of a sequence characterized amplified region probe for authentication of crocodilian species

A 209-base pair (bp) crocodilian-specific sequence characterized amplified region (SCAR) was identified from a 425-bp randomly amplified polymorphic DNA (RAPD) fragment. The 209-bp SCAR was produced from amplifications of DNA extracted from fresh and/or dry meat samples from at least three species of Crocodylus, Caiman crocodylus, and Alligator mississippiensis. No amplification was observed from DNA of other common animal species. The use of SCAR opens the way for quick authentication of crocodilian samples for conservation biology and trade regulation.     

Changes to Category C of the British List†

In its maintenance of the British List, the British Ornithologists’ Union Records Committee (BOURC) is responsible for assigning species to categories to indicate their status on the List. In 1995, the British Ornithologists’ Union (BOU) and the Joint Nature Conservation Committee (JNCC) held a conference on naturalized and introduced birds in Britain ( Holmes & Simons 1996 ). This led to a review of the process of establishment of such species and the terms that best describe their status ( Holmes & Stroud 1995 ) as well as a major review of the categorization of species on the British List ( Holmes et al. 1998 ). The BOURC continues to review the occurrence and establishment of birds of captive origin in Britain. This paper summarizes the status of naturalized and introduced birds in Britain and announces changes to the categorization of many on the British List or its associated appendices (Categories D and E): Mute Swan Cygnus olor Categories AC change to AC2 Black Swan Cygnus atratus Category E* – no change Greylag Goose Anser anser Categories ACE* change to AC2C4E* Snow Goose Anser caerulescens Categories AE* change to AC2E* Greater Canada Goose Branta canadensis Categories ACE* change to C2E* Barnacle Goose Branta leucopsis Categories AE* change to AC2E* Egyptian Goose Alopochen aegyptiacus Categories CE* change to C1E* Ruddy Shelduck Tadorna ferruginea Categories BDE* – no change Muscovy Duck Cairina moschata Category E* – alert JNCC Wood Duck Aix sponsa Category E* – no change Mandarin Duck Aix galericulata Categories CE* change to C1E* Gadwall Anas strepera Category A change to AC2 Mallard Anas platyrhynchos Categories AE* change to AC2C4E* Red‐crested Pochard Netta rufina Categories AE* change to AC2E* Ruddy Duck Oxyura jamaicensis Categories CE* change to C1E* Black Grouse Tetrao tetrix Categories AE – no change Western Capercaillie Tetrao urogallus Categories BC change BC3 Red‐legged Partridge Alectoris rufa Categories CE* change to C1E* Grey Partridge Perdix perdix Categories ACE change to AC2E Common Pheasant Phasianus colchicus Categories CE* change to C1E* Golden Pheasant Chrysolophus pictus Categories CE* change to C1E* Lady Amherst's Pheasant Chrysolophus amherstiae Categories CE* change to C6E* Black‐crowned Night Heron Nycticorax nycticorax Categories AE* – no change Sacred Ibis Threskiornis aethiopicus Category E – no change Red Kite Milvus milvus Categories AC change to AC3 White‐tailed Eagle Haliaeetus albicilla Categories ACE change to AC3E Northern Goshawk Accipiter gentilis Categories AE* change to AC3E* Rock/Feral Pigeon Columbia livia Categories AE* change to AC4E* Rose‐ringed Parakeet Psittacula krameri Categories CE* change to C1E* Barn Owl Tyto alba Categories AE* – no change Little Owl Athene noctua Category C change to C1     

Diversification of the rice Waxy gene by insertion of mobile DNA elements into introns.

The waxy (wx) gene of Oryza glaberrima was cloned, and its nucleotide sequence was determined. A waxy mutant of O. glaberrima showing a glutinous phenotype was found to contain a substitution mutation generating a termination codon in the coding region of the wx gene. The Wx sequence of O. glaberrima was different from that of Oryza sativa by substitutions and insertions/deletions, among which only a few substitutions occurred in several exons not to severely alter the amino acid sequence of the Wx protein. The most striking difference observed in introns was a 139-bp deletion (or insertion) in intron 10 of O. glaberrima (or O. sativa). In O. sativa, 125 bp of the 139-bp sequence was flanked by direct repeats of a 14-bp sequence. A sequence homologous to the 125-bp sequence was found in the region preceding exon 2; this sequence was also flanked by direct repeats of another 14-bp sequence. This result and the observation that the 125-bp sequence was interspersed in rice genomes indicate that they are SINEs (short interspersed elements) in the plant system. We also identified a DNA sequence with long terminal inverted repeats in intron 13 of both O. glaberrima and O. sativa. This sequence was present in multiple copies in rice genomes, suggesting that it is a transposable element. These results obtained suggest that mobile DNA elements have diversified the rice Waxy gene by inserting into introns, each of which may originally have a length of about 100 bp.     

Autoradiography after tritiated thymidine labeling of the abortive gametogenesis in hybrid male ducks from the cross male Pekin X female Barbary]

This autoradiographic data concludes that meiotic prophase of the abortive gametogenesis of the sterile hybride drake (from the mating Peking male = Anas platyrhynchos L. X Barbary female = Cairina moschata L.) lasts 5 days 1/4. 6 days after the injection of the marker the seminiferous tubules contain numerous labeles necrosing cells but never typical elongated spermatids.     

Molecular characterization and evolution of an interspersed repetitive DNA family of oysters

When genomic DNA from the European flat oyster Ostrea edulis L. was digested by BclI enzyme, a band of about 150?bp was observed in agarose gel. After cloning and sequencing this band and analysing their molecular characteristics and genomic organization by means of Southern blot, in situ hybridisation, and polymerase chain reaction (PCR) protocols, we concluded that this band is an interspersed highly repeated DNA element, which is related in sequence to the flanking regions of (CT)-microsatellite loci of the species O. edulis and Crassostrea gigas. Furthermore, we determined that this element forms part of a longer repetitive unit of 268?bp in length that, at least in some loci, is present in more than one copy. By Southern blot hybridisation and PCR amplifications-using primers designed for conserved regions of the 150-bp BclI clones of O. edulis-we determined that this repetitive DNA family is conserved in five other oyster species (O. stentina, C. angulata, C. gigas, C. ariakensis, and C. sikamea) while it is apparently absent in C. gasar. Finally, based on the analysis of the repetitive units in these oyster species, we discuss the slow degree of concerted evolution in this interspersed repetitive DNA family and its use for phylogenetic analysis.     

Complete homology in metallothionein from two genera of ducks and their hybrids

Metallothionein purified from two genera of domesticated duck, Anas platyrhnchos and Cairina muschata, and their hybrid were analyzed and shown to consist of one identical amino acid sequence. Since most vertebrates carry two or more isospecies of this inducible, thiol rich, metal sequestering protein, this finding suggests that duck metallothionein is evolutionary primitive.     

Quantification of allochthonous nutrient input into freshwater bodies by herbivorous waterbirds

1. Waterbirds are considered to import large quantities of nutrients to freshwater bodies but quantification of these loadings remains problematic. We developed two general models to calculate such allochthonous nutrient inputs considering food intake, foraging behaviour and digestive performance of waterbirds feeding in terrestrial habitats: an intake model (IM), mainly based on an allometric relationship for energy requirements and a dropping model (DM), based on allometric relationships for defaecation. 2. Reviewed data of nitrogen (N) and phosphorus (P) content of herbivorous food varied according to diet type (foliage, seeds and roots), season and fertilization. For model parameterization average foliage diet contained 38.20 mg N g^?1 and 3.21 mg P g^?1 (dry weight), whereas mean faeces composition was 45.02 mg N g^?1 and 6.18 mg P g^?1. 3. Daily allochthonous nutrient input increased with body mass ranging from 0.29 g N and 0.03 g P in teals Anas crecca to 5.69 g N and 0.57 g P in mute swans Cygnus olor. Results from IM differed from those of DM from ducks to swans by 63–108% for N and by ?4 to 23% for P. Model uncertainty was lowest for the IM and mainly caused by variation in estimates of food retention time (RT). In DM food RT and dropping mass determined model uncertainty in similar extent. 4. Exemplarily applying the models to Dutch wetlands resulted in mean annual contribution of herbivorous waterbirds to allochthonous nutrient loading of 382.8 ± 167.1 tonnes N a^?1and 34.7 ± 2.3 tonnes P a^?1, respectively, which corresponds to annual surface‐water loadings of 1.07 kg N ha^?1 and 0.10 kg P ha^?1. 5. There was a distinct seasonal pattern with peak loadings in January, when bird abundances were highest. Lowest inputs were in August, when bird abundance and nutrient content in food was low and birds foraged less in terrestrial habitats. Three‐quarters of all nutrient input was contributed by greater white‐fronted goose Anser albifrons, greylag goose Anser anser, wigeon Anas penelope and barnacle goose Branta leucopsis alone. 6. We provide general, easy to use calculation methods for the estimation of allochthonous nutrient inputs by waterbirds, which are applicable to a range of waterbird species, a variety of potential diets and feeding behaviours, and across spatial scales. Such tools may greatly assist in the planning and execution of management actions for wetland nutrient budgets.