Genetic Adaptation to Elevated Carbon Dioxide Atmospheres by Pseudomonas-Like Bacteria Isolated from Rock Cod (Sebastes spp.)

The microorganisms on rock cod fillets stored in a modified atmosphere (MA; 80% CO₂-20% air) at 4°C for 21 days were isolated. Only Lactobacillus sp. (71 to 87%) and tan-colored Pseudomonas sp.-like isolates (TAN isolates) were found. The TAN isolates grew more slowly in MA than in air at 8°C. When TAN isolates were grown in air at 8°C and then transferred to MA at 8°C, there was an initial decline in viable counts for 10 to 30 h followed by exponential growth. During this exponential growth phase in MA, the growth rates of the TAN isolates from MA-stored fish were significantly greater than those of the TAN isolates from fresh fish. When a TAN isolate from fresh fish was grown under MA for 21 days, it then grew as rapidly under MA as isolates from MA-stored fish. These results suggest that the TAN isolates genetically adapt to high levels of CO₂.     

Microbiological analysis of rock cod (Sebastes spp.) stored under elevated carbon dioxide atmospheres

The numbers and types of microorganisms on fresh rock cod fillets and fillets stored in air or in a modified atmosphere (MA; 80% CO(2), 20% air) at 4 degrees C were compared. Samples were analyzed after 0, 7, 14, and 21 days of storage. The isolation plates were incubated aerobically, anaerobically, or under MA at 4, 20, or 35 degrees C. After 7 days of storage in air, the fillets were obviously spoiled and had a 3- to 4-log cycle increase in microbial counts. Plate counts increased more slowly on MA-stored fillets. After 21 days, the counts on the latter had increased only 2 log cycles, and the fillets did not seem spoiled. The microbial flora changed greatly during MA storage. Only Lactobacillus spp. (70%) and an Aeromonas sp.-like isolate (30%) were found on plates incubated aerobically at 4 and 20 degrees C, and only Lactobacillus spp. was found on plates incubated aerobically and anaerobically at 35 and at 20 degrees C under MA. Isolation plates incubated at 20 degrees C in air gave the highest counts in the shortest incubation time and the greatest diversity of bacterial types recovered. No Vibrio parahaemolyticus, Staphylococcus aureus, or Clostridium botulinum type E were isolated from the fresh or MA-stored fillets.     

Growth and Resource Use of Birch Seedlings Under Elevated Carbon Dioxide and Temperature

The effects of elevated CO₂and temperature on the growth, resourceacquisition and resource allocation of small birch seedlings(Betula pendula Roth.) were examined under conditions of non-limitingsoil, water and nutrient supply. Seedlings were planted in potsand placed in controlled environment chambers either under normalambient conditions (CON), or in the presence of elevated CO₂(approx.700 µmol mol^-1; Elev. C), elevated temperature (approx.3 °C above the outside ambient temperature; Elev. T) ora combination of elevated CO₂and elevated temperature (Elev.C + T). Both Elev. C and Elev. T significantly increased biomassaccumulation, but the extent of the increase depended greatlyon the stage of development of the seedlings. Furthermore, thetheoretically expected positive effect of the warmer temperatureon the CO₂-induced stimulation of growth was not observed. Byanalysing resource acquisition (i.e. CO₂ , nitrogen and wateruptake), seedling development, leaf area production and theallocation pattern, it was deduced that the CO₂-stimulated increasein biomass resulted mainly from the initial ‘fertilization’effect of CO₂while the temperature-induced increase in biomassstemmed from higher net carbon intake during the middle andlatter parts of the growing season achieved by virtue of theincreased leaf area and larger photosynthetic capacity. Thelack of positive stimulation by temperature under Elev. C +T may be related in part to (1) CO₂-induced acceleration ofseedling development, which led to a small or no response toCO₂enrichment and lower leaf area production during the latterpart of the growth season, and (2) a cumulative delay in theresponse of growth to the warmer temperature, which did notincrease net carbon intake when the seedlings were at a juvenilestage. Neither Elev. C nor Elev. T altered the root:shoot ratioduring early growth, but Elev. C increased it during the latterpart of the growth season while Elev. T decreased it, possiblyon account of a change in leaf area retention. Finally, thenitrogen and water use efficiencies of seedlings at differentstages of development are discussed. Copyright 2001 Annals ofBotany Company Photosynthesis, growth, resource acquisition and allocation, elevated CO₂and temperature, Betula pendula Roth     

Relationships Between Microbial Community Structure and Soil Processes Under Elevated Atmospheric Carbon Dioxide

There is little current understanding of the relationship between soil microbial community composition and soil processes rates, nor of the effect climate change and elevated CO₂ will have on microbial communities and their functioning. Using the eastern cottonwood (Populus deltoides) plantation at the Biosphere 2 Laboratory, we studied the relationships between microbial community structure and process rates, and the effects of elevated atmospheric CO₂ on microbial biomass, activity, and community structure. Soils were sampled from three treatments (400, 800, and 1200 ppm CO₂), a variety of microbial biomass and activity parameters were measured, and the bacterial community was described by 16S rRNA libraries. Glucose substrate-induced respiration (SIR) was significantly higher in the 1200 ppm CO₂ treatment. There were also a variety of complex, nonlinear responses to elevated CO₂. There was no consistent effect of elevated CO₂ on bacterial diversity; however, there was extensive variation in microbial community structure within the plantation. The southern ends of the 800 and 1200 ppm CO₂ bays were dominated by β-Proteobacteria, and had higher fungal biomass, whereas the other areas contained more α-Proteobacteria and Acidobacteria. A number of soil process rates, including salicylate, glutamate, and glycine substrate-induced respiration and proteolysis, were significantly related to the relative abundance of the three most frequent bacterial taxa, and to fungal biomass. Overall, variation in microbial activity was better explained by microbial community composition than by CO₂ treatment. However, the altered diversity and activity in the southern bays of the two high CO₂ treatments could indicate an interaction between CO₂ and light.     

Short- and Long-Term Inhibition of Respiratory Carbon Dioxide Efflux by Elevated Carbon Dioxide

Dark carbon dioxide efflux rates of recently fully expandedleaves and whole plants of Amaranthus hypochondriacus L., Glycinemax (L.) Merr., and Lycopersicon esculentum Mill. grown in controlledenvironments at 35 and 70 Pa carbon dioxide pressure were measuredat 35 and 70 Pa carbon dioxide pressure. Harvest data and whole-plant24-h carbon dioxide exchange were used to determine relativegrowth rates, net assimilation rates, leaf area ratios, andthe ratio of respiration to photosynthesis under the growthconditions. Biomass at a given time after planting was greaterat the higher carbon dioxide pressure in G. max and L. esculentum,but not the C₄ species, A. hypochondriacus. Relative growthrates for the same range of masses were not different betweencarbon dioxide treatments in the two C₃ species, because highernet assimilation rates at the higher carbon dioxide pressurewere offset by lower leaf area ratios. Whole plant carbon dioxideefflux rates per unit of mass were lower in plants grown andmeasured at the higher carbon dioxide pressure in both G. maxand L. esculentum, and were also smaller in relation to daytimenet carbon dioxide influx. Short-term responses of respirationrate to carbon dioxide pressure were found in all species, withcarbon dioxide efflux rates of leaves and whole plants lowerwhen measured at higher carbon dioxide pressure in almost allcases. Amaranthus hypochondriacus L., Glycine max L. Merr., Lycopersicon esculentum Mill., soybean, tomato, carbon dioxide, respiration, growth     

Survival of Aspergillus flavus and Fusarium moniliforme in High-Moisture Corn Stored Under Modified Atmospheres

Freshly harvested high-moisture corn with 29.4% moisture and corn remoistened to 19.6% moisture were inoculated with Aspergillus flavus Link ex Fr. and stored for 4 weeks at about 27 C in air (0.03% CO₂, 21% O₂, and 78% N₂) and three modified atmospheres: (i) 99.7% N₂ and 0.3% O₂; (ii) 61.7% CO₂, 8.7% O₂, and 29.6% N₂; and (iii) 13.5% CO₂, 0.5% O₂, and 84.8% N₂. Kernel infections by A. flavus, Fusarium moniliforme (Sheld.) Snyd. et Hans., and other fungi were monitored weekly. The modified-atmosphere treatments delayed deterioration by A. flavus and F. moniliforme, but their growth was not completely stopped. A. flavus survived better in the remoistened than in the freshly harvested corn. F. moniliforme survived in both. A. flavus and F. moniliforme were the dominant fungi in corn removed from the modified atmospheres and exposed to normal air for 1 week.     

Observations and experiments on extending shelf-life of 'rockfish' (Sebastes spp.) products with ozone

On a fishing vessel and in the laboratory, trials were undertaken to study the effect of ozonation on rockfish bacteria ( Sebastes spp.) during transport from fishing grounds. At the beginning of the experiment, bacterial loads were the same on ozone-treated and control samples. Fish transported in ozonated water lost some of their bacterial film with surface slime when they were pumped from the boat's hold into the processing plant. Ozonation appears to encourage the detachment of the surface slime and bacterial film by partly oxidizing the excess slime excreted during capture. When ozonated intermittently during transport the fish shelf-life was extended by about 36 h. The same ozonation treatment was simulated in the laboratory which revealed higher bacterial counts on the ozonated fish than on the control samples. Fish used in this trial are believed to have been stored for several days prior to ozonation. This storage may have resulted in changes in the properties of the surface slime, counteracting the effect of ozonation.     

Carbon Dioxide Absorption from Anæsthetic Atmospheres : (Section of Anæsthetics)

A safe and practical technique for the application of carbon dioxide absorption from an?sthetic atmospheres is described. It has been found satisfactory in over 20,000 administrations over a period of fifteen years. High-grade soda lime is utilized as the chemical absorbent. Granules are placed in a canister between face mask, and breathing bag. The canister is carefully checked for efficiency by both chemical analyses and physical experiments. Its size, shape and arrangement is shown to be important for safety and maximum efficiency. Detailed techniques are described for the use of various agents. Advantages of carbon dioxide absorption are set forth. The "Apn?a" suggested by Guedel is described under the term "Controlled Respiration" and attention is called to certain of its advantages.     

Carbon Dioxide Exchange of Developing Apple (Malus pumila Mill.) Fruits

The carbon dioxide exchange of developing apple fruits was monitoredduring development. The results of measurements on detachedfruits in the laboratory were consistent with those made onattached fruit in the field. Respiration rate at 20 °C inthe dark declined from 120 ng CO₂ g^–1 fr. wt. s_–1on 5 June (4 weeks after full bloom) to less than 3 ng g^–1fr. wt. s^–1 by late September. In the light, net CO₂ evolutionwas much decreased, but on no occasion did photosynthesis exceedrespiration and no net CO₂ uptake was detected. The Q₁₀ fordark respiration over the interval from 15 to 25 °C changedfrom 2.8 in early June to 1.6 in early August     

Carbon Dioxide Fixation in the Carbon Economy of Developing Seeds of Lupinus albus (L.)

The effects of CO₂ concentration and illumination on net gas exchange and the pathway of ¹⁴CO₂ fixation in detached seeds from developing fruits of Lupinus albus (L.) have been studied.

Increasing the CO₂ concentration in the surrounding atmosphere (from 0.03 to 3.0% [v/v] in air) decreased CO₂ efflux by detached seeds either exposed to the light flux equivalent to that transmitted by the pod wall (500 to 600 micro-Einsteins per square meter per second) in full sunlight or held in darkness. Above 1% CO₂ detached seeds made a net gain of CO₂ in the light (up to 0.4 milligrams of CO₂ fixed per gram fresh weight per hour) but ¹⁴CO₂ injected into the gas space of intact fruits (containing around 1.5% CO₂ naturally) was fixed mainly by the pod and little by the seeds.

Throughout development seeds contained ribulose-1,5-bisphosphate carboxylase activity (EC 4.1.1.39), especially in the embryo (up to 99 micromoles of CO₂ fixed per gram fresh weight per hour) and phosphoenolpyruvate carboxylase (EC 4.1.1.31) in both testa (up to 280 micromoles of CO₂ fixed per gram fresh weight per hour) and embryo (up to 355 micromoles of CO₂ fixed per gram fresh weight per hour).

In kinetic experiments the most significant early formed product of ¹⁴CO₂ fixation in both light and dark was malate but in the light phosphoglyceric acid and sugar phosphates were also rapidly labeled. ¹⁴CO₂ fixation in the light was linked to the synthesis of sugars and amino acids but in the dark labeled sugars were not formed.

     

Carbon Dioxide Assimilation,Transpiration, and Leaf Conductance of Bean (Phaseolus Vulgaris L.) Under Blue and Red Radiation

In bean (Phaseolus vulgaris L.) seedlings well supplied with water, rates of transpiration (E) and CO₂ assimilation (P _N) of the primary leaves were measured under blue (BR) or red (RR) irradiance of 150 µmol(photon) m^–2 s^–1. The leaf conductance to H₂O vapour transfer (g _H2O), as well as the intercellular concentrations of H₂O vapour (e _i) and of CO₂ (C _i) were calculated. Under BR, g _H2O was significantly greater, but P _N was lower, and E similar as compared with corresponding values found under RR. The increase of stomata aperture under BR was evident although C _i was higher and e _i was lower than under RR. Results agree with the suggestion that BR directly activates guard cell metabolism and in well watered plants determines mainly the stomata aperture.     

Impacts of Elevated Carbon Dioxide and Temperature on a Boreal Forest Ecosystem (CLIMEX Project)

To evaluate the effects of climate change on boreal forest ecosystems, both atmospheric CO₂ (to 560 ppmv) and air temperature (by 3°–5°C above ambient) were increased at a forested headwater catchment in southern Norway. The entire catchment (860 m²) is enclosed within a transparent greenhouse, and the upper 20% of the catchment area is partitioned such that it receives no climate treatment and serves as an untreated control. Both the control and treatment areas inside the greenhouse receive deacidified rain. Within 3 years, soil nitrogen (N) mineralization has increased and the growing season has been prolonged relative to the control area. This has helped to sustain an increase in plant growth relative to the control and has also promoted increased N export in stream water. Photosynthetic capacity and carbon–nitrogen ratio of new leaves of most plant species did not change. While the ecosystem now loses N, the long-term fate of soil N is a key uncertainty in predicting the future response of boreal ecosystems to climate change. Received 18 November 1997; accepted 13 April 1998.     

The utility and limitations of genetic data for stock identification and management of North Pacific rockfish (Sebastes spp.)

Rockfishes (Sebastes spp.) represent a speciose and ecologically important group of marine fishes found in both the Pacific and Atlantic oceans, with approximately 105 species found world-wide (Hyde and Vetter 2007). They also comprise the majority of species found in the Pacific groundfish fishery. Thorough species assessments in terms of harvest management have been done for only 11 species, and of the 11 species, seven have been declared overfished. Having accurate genetic information is critical to the continuing effort at stock assessments, but sampling is often difficult in marine fishes. Genetic techniques are a powerful tool in the effort to better characterize the ecology of these species. These techniques can be used to investigate multiple biological traits, including species identity, intra- and interspecific genetic variation, migration patterns, and effective population size. There are important caveats and limitations when applying specific genetic methods, especially in marine species that lack discrete spawning aggregates. Nevertheless, it is clear from a review of recent literature that genetic tools have already provided very specific insight regarding rockfish population dynamics. The results are diverse and difficult to synthesize; however, existing studies show five primary patterns to population groupings in rockfishes: no obvious pattern of structure, structure consistent with isolation by distance, structure evident but inconsistent with isolation by distance, structure that correlates to oceanographic features, and potential genetic introgression. Clearly the study of rockfish population genetics is poised for rapid expansion that will unquestionably aid management of the rockfish fisheries and general understanding of rockfish evolutionary systematics. A principle challenge at this point is to derive generalized inferences from such a diverse array of study results across the vast North Pacific range of Sebastes. This review summarizes existing genetic studies in Sebastes spp. in the North Pacific to assist in identifying knowledge gaps for this ecologically important and diverse group.     

Elevated carbon dioxide affects leaf-miner performance and plant growth in docks (Rumex spp.)

Exposure of R. crispus and R. obtusifolius to elevated CO₂ (600 ppm) resulted in an increased C:N ratio of leaf tissue and greater leaf areas. Larvae of P. nigritarsis mining leaves of R. obtusifolius during exposure produced significantly bigger mines in elevated than in ambient (350 ppm) conditions. There were no significant treatment effects on pupal weight although in both host species mean weight was greater in ambient than in elevated conditions. These results are consistent with the hypothesis that insect herbivores compensate for increased C:N ratios by increased food consumption. This response by herbivores may partially offset predicted increases in plant biomass in a future high CO₂ environment.     

Effect of Elevated Carbon Dioxide Concentration on the Stomatal Parameters of Rice Cultivars

The response of stomatal parameters of four rice cultivars to atmospheric elevated CO₂ concentration (EC) was studied using open top chambers. EC brought about reduction in stomatal conductance and increase in stomatal index, size of stomatal guard cells, stroma, and epidermal cells. Such acclimation helped the regulation of photosynthesis to EC. These changes in stomatal characters made rice cultivars adjustable to EC environment.     

Parallel amino acid replacements in the rhodopsins of the rockfishes (Sebastes spp.) associated with shifts in habitat depth

Among various groups of fishes, a shift in peak wavelength sensitivity has been correlated with changes in their photic environments. The genus Sebastes is a radiation of marine fish species that inhabit a wide range of depths from intertidal to over 600 m. We examined 32 species of Sebastes for evidence of adaptive amino acid substitution at the rhodopsin gene. Fourteen amino acid positions were variable among these species. Maximum likelihood analyses identify several of these to be targets of positive selection. None of these correspond to previously identified critical amino acid sites, yet they may in fact be functionally important. The occurrence of independent parallel changes at certain amino acid positions reinforces this idea. Reconstruction of habitat depths of ancestral nodes in the phylogeny suggests that shallow habitats have been colonized independently in different lineages. The evolution of rhodopsin appears to be associated with changes in depth, with accelerated evolution in lineages that have had large changes in depth.     

Alteration of Soil Carbon Pools and Communities of Mycorrhizal Fungi in Chaparral Exposed to Elevated Carbon Dioxide

We examined the effects of atmospheric carbon dioxide (CO₂) enrichment on belowground carbon (C) pools and arbuscular mycorrhizal (AM) fungi in a chaparral community in southern California. Chambers enclosing intact mesocosms dominated by Adenostoma fasciculatum were exposed for 3.5 years to CO₂ levels ranging from 250 to 750 ppm. Pools of total C in bulk soil and in water-stable aggregates (WSA) increased 1.5- and threefold, respectively, between the 250- and 650-ppm treatments. In addition, the abundance of live AM hyphae and spores rose markedly over the same range of CO₂, and the community composition shifted toward dominance by the AM genera Scutellospora and Acaulospora. Net ecosystem exchange of C with the atmosphere declined with CO₂ treatment. It appears that under CO₂ enrichment, extra C was added to the soil via AM fungi. Moreover, AM fungi were predominant in WSA and may shunt C into these aggregates versus bulk soil. Alternatively, C may be retained longer within WSA than within bulk soil. We note that differences between the soil fractions may act as a potential feedback on C cycling between the soil and atmosphere.