Genotypic Microbial Community Profiling: A Critical Technical Review

Microbial ecology has undergone a profound change in the last two decades with regard to methods employed for the analysis of natural communities. Emphasis has shifted from culturing to the analysis of signature molecules including molecular DNA-based approaches that rely either on direct cloning and sequencing of DNA fragments (shotgun cloning) or often rely on prior amplification of target sequences by use of the polymerase chain reaction (PCR). The pool of PCR products can again be either cloned and sequenced or can be subjected to an increasing variety of genetic profiling methods, including amplified ribosomal DNA restriction analysis, automated ribosomal intergenic spacer analysis, terminal restriction fragment length polymorphism, denaturing gradient gel electrophoresis, temperature gradient gel electrophoresis, single strand conformation polymorphism, and denaturing high-performance liquid chromatography. In this document, we present and critically compare these methods commonly used for the study of microbial diversity.     

紫杉烷微生物转化研究进展

紫杉醇是临床效果最好的抗癌药物之一。其主要来源于红豆杉提取、全合成与半合成。利用微生物转化其副产物能提高红豆杉利用率。转化反应过程涉及紫杉烷水解、酰化、羟基化、脱氢、差向异构化等。本文概述了现阶段紫杉烷各类型微生物转化研究,为进一步深入研究微生物转化提供科学基础。     

Prey-Dependent Mortality Rate: A Critical Parameter in Microbial Models

Protozoa are key components of a wide range of ecosystems, but ecological models that incorporate these microbes often suffer from poor parameterisation, specifically of top-level predator loss rates. We (1) suggest that top-level predator mortality is prey-dependent, (2) provide a novel approach to assess this response, and (3) illustrate the ecological relevance of these findings. Ciliates, Paramecium caudatum (prey) and Didinium nasutum (predator), were used to evaluate predator mortality at varying prey levels. To assess mortality, multiple (>100) predators were individually examined (in 2-ml wells), daily (for 3 days), between 0 and 120 preys ml⁻¹. Data were used to determine non-linear mortality and growth responses over a range of prey abundances. The responses, plus literature data were then used to parameterise a predator–prey model, based on the Rosenzweig–MacArthur structure. The model assessed the impact of variable and three levels of constant (high, average and low) mortality rates on P. caudatum–D. nasutum population dynamics. Our method to determine variable mortality rate revealed a strong concave decline in mortality with increasing prey abundance. The model indicated: (1) high- and low-constant mortality rates yielded dynamics that deviate substantially from those obtained from a variable rate; (2) average mortality rate superficially produced dynamics similar to the variable rate, but there were differences in the period of predator–prey cycles, and the lowest abundance of prey and predators (by ~2 orders of magnitude). The differences between incorporating variable and constant mortality rate indicate that including a variable rate could substantially improve microbial-based ecological models.     

广东省微生物肥料的回顾和展望

对广东省微生物肥料发展的历史、发展概况提出看法,并预测未来10年时间肥料将进入其发展的新阶段即活性微生物复合肥阶段。     

广东省微生物肥料的回顾和展望

对广东省微生物肥料发展的历史、发展概况提出看法,并预测未来10年时间肥料将进入其发展的新阶段即活性微生物复合肥阶段。     

Bisphosphonates and Connexin 43: A Critical Review of Evidence

Abstract

Bisphosphonates (BPs) are drugs commonly used in the treatment of various disease arising or affecting bone tissue. There is a standard use in bone neoplasia and metastasis, hormonal and developmental disorders as well as for compensation of adverse effects in several medical therapies. Many in-vivo and in-vitro studies have assessed the efficacy of this drug and its function in cellular scale. In this concern, BPs are described to inhibit the resorptive function of osteoclasts and to prevent apoptosis of osteoblasts and osteocytes. They can preserve the osteocytic network, reduce fracture rate, and increase the bone mineral content, which is therapeutically used. Connexin 43 (Cx43) is a crucial molecule for basal regulation of bone homeostasis, development, and differentiation. It is described for signal transduction in many physiological and pathological stimuli and recently to be involved in BP action.     

Traumatic Fibromyositis: A Critical Review of an Enigmatic Concept

Traumatic fibromyositis is not an inflammation; there is no fever, leukocytosis or increased sedimentation rate; electrical characteristics and serum enzyme levels are within normal limits, and there are no observable pathologic alterations, although they have been carefully searched for. Recent attempts to express the effects of muscular sprain or strain as a biochemical disturbance expressed in an unusual pattern of lactate dehydrogenase isoenzymes appear not only to be technically flawed but inconsistent with results of conventional enzyme studies on other muscle and interstitial inflammations. In the author''s view, “traumatic” fibromyositis is no more than a verbal construct arrived at by adding an adjectival modifier to the old terms for idiopathic rheumatic disorders. An examination of the evolution of the concept of traumatic fibromyositis shows that it lacks validity as a clinical diagnosis and ought to be abandoned.     

Morphogenesis of Simple and Compound Leaves: A Critical Review

The leaves of seed plants evolved from a primitive shoot system and are generated as determinate dorsiventral appendages at the flanks of radial indeterminate shoots. The remarkable variation of leaves has remained a constant source of fascination, and their developmental versatility has provided an advantageous platform to study genetic regulation of subtle, and sometimes transient, morphological changes. Here, we describe how eudicot plants recruited conserved shoot meristematic factors to regulate growth of the basic simple leaf blade and how subsets of these factors are subsequently re-employed to promote and maintain further organogenic potential. By comparing tractable genetic programs of species with different leaf types and evaluating the pros and cons of phylogenetic experimental procedures, we suggest that simple and compound leaves, and, by the same token, leaflets and serrations, are regulated by distinct ontogenetic programs. Finally, florigen, in its capacity as a general growth regulator, is presented as a new upper-tier systemic modulator in the patterning of compound leaves.     

Review: Microbial colonization of prosthetic devices

Conclusion The threat of bacterial colonization and biofilm formation poses the most important limitation on the use and development of prosthetic devices in human medicine. Data from the literature suggest that microbial adherence effected by the glycocalyx is a fundamental factor in sepsis involving biomaterials and that it may explain the resistance of such infections to host defense mechanisms and to antibiotherapy. A full appreciation of the existence and the consequences of the biofilm mode of bacterial growth is required so that we can both prevent and eliminate these protected microbial reservoirs.     

Review: Microbial synthesis of agrochemical metabolites

The synthesis of agrochemical metabolite reference standards by microbial cultures can serve as a useful alternative to conventional chemical synthesis, particularly when the chemical synthesis is difficult. Microbially generated metabolites of agrochemicals can also be useful for predicting degradative pathways in animals, plants and soils prior to conducting animal, plant and soil metabolism studies which are required by regulatory agencies to support agrochemical registrations. Examples from the literature are used to illustrate the utility of synthesizing metabolites of agrochemicals by common microbes. Received 17 January 1997/ Accepted in revised form 20 March 1997     

Quantification of S-adenosyl Methionine in Microbial Cell Extracts

A sensitive method for quantification of S-adenosyl methionine (SAM) in microbial cell extracts was developed and applied to Corynebacterium glutamicum. The method is based on SAM being completely hydrolyzed into ¹⁸O-homoserine when extracted in boiling H₂¹⁸O and thus can be clearly distinguished by GC-MS analysis from naturally labeled homoserine present in the cell extract. Additional quantification of the total homoserine pool, representing both SAM and homoserine, via HPLC allows separate determination of both metabolites. Received 23 August 2005; Revisions requested 30 August 2005; Revisions received 26 September 2005; Accepted 31 October 2005     

The Thermic Effect of Food and Obesity: A Critical Review

DE JONGE, LILIAN, GEORGE BRAY. The thermic effect of food and obesity: A critical review. This review has examined the factors that influence the thermic effect of food (TEF) by evaluating 49 studies that have compared subjects who are obese with those who are lean. Meal size, meal composition, the nature of the previous diet, insulin resistance, physical activity, and ageing influence TEF. In the studies of individuals who are obese or lean, of those who used intravenous glucose infusions, all but one found an impaired thermic response. A total of 29 out of 49 studies of individuals of normal weight or with obesity were identified where there was no difference in age between the groups, and where the subjects who were “overweight” were clearly obese. Of these 29, 22 reported a statistically significant reduction in TEF, 3 studies were not designed to look primarily at the effect of obesity on TEF, and the other 4 may not have had sufficiently palatable meals. From this review, we conclude that the reduction of TEF in obesity is related to the degree of insulin resistance, which may be influenced by a low level of sympathetic activity.