Quantitative Assessment of the Biocidal Activity of Chemicals Using Soil Microbial Associations

Quantitative assessment, using three Pseudomonas sp. strains, of the activity of the microbial biocide Soncid 8101 demonstrated that the values of effective sublethal concentrations (L₅₀) differed by 500% (because of individual variations in the sensitivity of the test strains). The spread of parameters of biocidal activity could be narrowed by using a mixture of microorganisms with high, medium, and weak resistance. A method for quantitative assessment of the activity of microbial biocides was proposed based on the use of natural associations of soil bacteria.     

产酯酶微生物菌种的筛选研究

研究了产酯酶微生物的筛选,包括筛选模型、酶活力检测方法及菌株的分布。对30多份土样以及实验室保存的菌种进行了大量的筛选,以添加三醋酸甘油酯、乳酸乙酯酯类物质对土样等样品富集,采用添加显色剂溴甲酚紫的快速简便平板显色法,观察水解变色圈直径和菌落直径的大小进行初筛。获得两者直径之比相对大的菌株174株,采用平板打孔检测法和摇瓶发酵比色法测酶活力相结合进行复筛,最终得到酯酶活力较高的24株菌株。就初筛和复筛方法及结果加以比较分析,复筛菌株做不同底物的酶活力检测,建立了一个有效、简便及快速的微生物酯酶的筛选模型。并对酯酶产生菌的立体选择专一性进行了初步考察。     

热带太平洋深海微生物抗肿瘤活性的初步研究

以４个人体癌细胞株为模型、利用四甲基偶氮唑盐（Methyl Thiazolyl blue Tetrazolium bromide,MTT）比色法和磺酰罗丹明（SulfoRhodamine B,SRB）染色法对55株来自于热带太平洋深海微生物（细菌和霉菌）的培养液的乙酸乙酯抽提物以及菌体的甲醇提取物进行了细胞毒活性筛选,并主要采用分子生物学方法鉴定了该批菌株. 结果表明,55株微生物发酵样品共１１０个提取物中,９０％样品表现出细胞毒活性;其中13株微生物的活性较强（提取物有效抑制浓度≤16μg/ml）,具有较好的开发应用前景。同时还发现,菌体中检测到的活性菌株数大于发酵液中检测到的活性菌株数, 细菌的筛选得率高于霉菌的筛选得率.鉴定结果显示, 50株微生物分属于21属、29种,其中１３个较高活性菌株来源于８个属。本文为我国深海微生物资源的开发利用,提供了探索性研究信息。     

高活性壳聚糖酶制剂的制备及其对壳聚糖降解作用的研究

对系列壳聚糖酶高产菌株的产酶性能及产酶发酵液的壳聚糖酶活性进行了比较,从中筛选出一株优良芽孢杆菌菌株,其产酶发酵液的壳聚糖酶活力高达5000U/mL(以单位时间内底物壳聚糖的减少量确定酶活力)。利用此粗制壳聚糖酶制剂对壳聚糖进行酶解产糖的研究表明:壳聚糖的转化率及壳寡糖的产率在适合的酶解条件下,短时间内即可接近100%。     

The activity of thyme essential oil against <Emphasis Type="Italic">Acinetobacter</Emphasis> spp.

The aim of this work was to investigate the antimicrobial properties of thyme essential oil against clinical multiresistant strains of Acinetobacter spp. The antibacterial activity of oil was tested against standard and clinical bacterial strains of Acinetobacter genus. The agar diffusion method was used to check the inhibition of microbial growth at various concentrations of the oil from Thymus vulgaris. Susceptibility testing to antibiotics and chemotherapeutics was prepared using the disc-diffusion method. Identification of bacterial strains was carried out with the Vitek system and confirmed by PCR for Acinetobacter baumanii gyrB gene. The results of experiments showed that the oil from T. vulgaris exhibited an extremely strong activity against all of the clinical strains of Acinetobacter. Thyme oil demonstrated a very good efficacy against multiresistant strains of tested bacteria. Essential oils seems to be an excellent alternative for synthetic preparations and that is reason for an extensive assessment of their antimicrobial activity.      

Response of bacteria to earthworm surface excreta

Response of bacteria to the surface excreta of the Aporrectodea caliginosa earthworm was studied. The excreta were obtained by a 1 h incubation of the earthworms in petri dishes with subsequent collection of the slime. Both inhibition and stimulation of growth were revealed, as well as suppression of the respiratory activity of some bacterial species treated with A. caliginosa surface excreta. The organisms studied included various taxa of soil bacteria (19 strains), bacteria isolated from A. caliginosa intestine and excrements (82 strain), and 48 Bacillus thuringiensis strains. For the cultures of soil bacteria, the respiratory activity was determined using the formazan color reaction due to the activity of the respiratory cycle enzymes. Earthworm excreta caused a consistent 30–50% decrease of dehydrogenase activity in 13 out of the 19 cultures. Determination of the growth rates (derived from OD₆₂₀ of cell suspensions) after 10 h of incubation revealed growth stimulation in 48 out of the 82 strains isolated from intestines and excrement. Other strains exhibited no reaction to the excreta. For 29 out of 45 B. thuringiensis strains, growth stimulation was observed, while growth of two strains was suppressed; other strains exhibited no reaction to the excreta. No relation was found between bacterial reaction to the excreta and their taxonomic position. These results correlate with the research, demonstrating antibacterial and antifungal activity of the extracts from the earthworm body and digestive tract. Thus, earthworms, apart from their medium-forming function, affect the formation of soil microbial communities by direct stimulation or suppression of specific microbial populations.     

The energetics of bacterial growth: a reassessment

The growth yield of microbial cultures can be used to estimate the efficiency of energy generation during a fermentation or respiration, in the past, the assessment of this efficiency in organisms carrying out a respiration has been the subject of many heated debates. This has partly been caused by the complexity of microbial respiratory chains. Strains of Escherichia coli specifically modified in their respiratory chain have been used recently to re-evaluate the energetic efficiency of the bacterial respiration using chemostat cultures. The different strains indeed show different growth efficiencies. The physiological significance of energetically less-efficient branches of the respiratory chain is discussed.     

产低温蛋白酶极地菌株的筛选及Pseudoalteromonas sp. QI-1产蛋白酶粗酶性质

通过酪蛋白平板法从实验室极地微生物资源库中筛选到130株在低温条件(4℃)下具有蛋白酶活性的菌株,并对部分酪蛋白水解圈较大的菌株进行了酶活测定和系统发育分析。发现酶活较高的8株菌分别属于假交替单胞菌属(Pseudoalteromonas)、科尔韦尔氏菌属(Colwellia)、希瓦氏菌属(Shewanella)、嗜冷杆菌属(Psychrobacter)。选择低温蛋白酶活性较高的菌株Pseudoalteromonas sp.QI-1为研究对象,以酪蛋白为反应底物对其所产低温蛋白酶粗酶酶性质进行初步研究。结果表明:QI-1低温蛋白酶酶活最适反应温度为40℃,在0℃时保持10%的相对酶活,酶活最适反应pH为10.0;其催化作用不需要金属离子的参与;热稳定性极差,在60℃放置15 min即完全失活。     

Antimicrobial activity of some new of 2-(4-ethyl-phenoximethyl) benzoic acid thioureides against planktonic cells

The aim of the present study was to evaluate the antimicrobial activity of new 2-(4-ethyl-phenoxymethyl) benzoic acid thioureides. The synthesis of the new compounds was done in three steps starting with the synthesis of 2-(4-ethyl-phenoxymethyl) benzoic acid. In the second stage, the 2-(4-ethyl-phenoxymethyl)-benzoyl chloride was prepared and the new thioureides were synthesized in the third step by the reaction of 2-(4-ethyl-phenoxymethyl) benzoyl isothiocyanate with various primary aromatic amines. The original compounds were screened for their in vitro antimicrobial activity against Gram-positive (Staphylococcus aureus, Bacillus subtilis) and Gram-negative bacteria (Escherichia coli, Klebsiella pneumoniae, Pseudomonas aeruginosa) as well as to fungal strains (Candida albicans, Aspergillus niger), using both reference and clinical, multidrug resistant strains. The qualitative screening of the susceptibility spectra of various microbial strains versus these compounds was performed by three adaptated diffusion methods: (1) impregnation of the filter paper disks with the respective substance solutions, (2) distribution of the tested solutions into agar wells and (3) spotting of the respective solutions on the solid medium previously inoculated with the microbial suspensions. The quantitative assay of the antimicrobial activity was performed by broth microdilution method in 96-well microplates in order to establish the minimal inhibitory concentration (MIC). The tested compounds exhibited specific antimicrobial activity with MICs ranging from 3.9 microg/mL to 250 microg/mL.     

Search for biological remedies for fungi of the Candida genus

51 bacterial strains were studied with a view to find out anticandidial activity; of these, 15 strains were found to have activity, more on less expressed with respect to fungi of the genus Candida. In most cases the anticandidial activity of an antagonist strain was manifested to a similar degree against several Candida strains. The preliminary analysis of antifungal substances produced by microbial strains makes it possible to suggest their antibiotic nature.     

Effect of genetically modified Pseudomonas fluorescens strains on the uptake of nitrogen by pea from 15N enriched organic residues

The effects of an antibiotic-producing Pseudomonas fluorescens strain (F113) carrying the marker gene cassette lac ZY and a marked, non-producing strain (F113G22) on the uptake of nitrogen from ¹⁵N enriched organic residues incorporated into a sandy soil were investigated in microcosm studies. Strain F113 produces the antibiotic 2,4-diacetylphloroglucinol (DAPG), while its modified derivative strain F113G22 has DAPG production deleted by Tn 5 mutagenesis. Uptake of nitrogen by pea ( Pisum sativum ) was estimated using isotope-ratio mass spectrometry. In addition, plant growth and microbial activity in soil were monitored. Both strains F113 and F113G22 enhanced the uptake of nitrogen from mineralized organic residues, even though the antibiotic producing strain F113 significantly reduced microbial activity in soil. It is suggested that the effect on nitrogen uptake was due to increased mineralization of organic residues by the introduced organisms, making greater quantities of inorganic nitrogen available for plant uptake. Unlike studies assessing impact in terms of perturbation to indigenous microbial communities, this study provides direct evidence of a change in ecosystem function as a result of the introduction of strains of a genetically marked bacterium, irrespective of whether its natural antibiotic-producing capacity has been genetically deleted.     

Culture-dependent and -independent approaches establish the complexity of a PAH-degrading microbial consortium

A microbial consortium (AM) obtained by sequential enrichment in liquid culture with a polycyclic aromatic hydrocarbon (PAH) mixture of three- and four-ringed PAHs as a sole source of carbon and energy was examined using a triple-approach method based on various cultivation strategies, denaturing gradient gel electrophoresis (DGGE), and the screening of 16S and 18S rRNA gene clone libraries. Eleven different sequences by culture-dependent techniques and seven by both DGGE and clone libraries were obtained. The comparison of three variable regions (V3-V5) of the 16S rRNA gene between the sequences obtained yielded 19 different microbial components. Proteobacteria were the dominant group, representing 83% of the total, while the Cytophaga-Flexibacter-Bacteroides group (CFB) was 11% and the Ascomycota fungi 6%. Beta-proteobacteria were predominant in the DGGE and clone library methods, whereas they were a minority in culturable strains. The highest diversity and number of noncoincident sequences were achieved by the cultivation method that showed members of the alpha-, beta-, and gamma-Proteobacteria; CFB bacterial group; and Ascomycota fungi. Only six of the 11 strains isolated showed PAH-degrading capability. The bacterial strain (AMS7) and the fungal strain (AMF1), which were similar to Sphingomonas sp. and Fusarium sp., respectively, achieved the greatest PAH depletion. The results indicate that polyphasic assessment is necessary for a proper understanding of the composition of a microbial consortium.     

Fluorogenic substrates for the detection of microbial nitroreductases

AIMS: To synthesize and evaluate fluorogenic substrates for the detection of microbial nitroreductases. These substrates, all based on 7-nitrocoumarin, may be reduced to form fluorescent aminocoumarins. METHODS AND RESULTS: Thirty pathogenic microbial strains, including both bacteria and yeasts, were examined for nitroreductase activity in a whole-cell assay. All strains readily reduced each of the seven substrates to generate fluorescence, suggesting the widespread presence of nitroreductase activity in pathogenic bacteria. CONCLUSIONS, SIGNIFICANCE AND IMPACT OF THE STUDY: These novel substrates facilitate the direct detection of nitroreductase activity and have potential as sensitive indicators of microbial growth.     

红树林样品不经分离的微生物群体培养物生物活性研究

从海南、广西与广东三省的红树林区采集了181个样品,不进行微生物分离而直接作发酵剂接种到发酵培养基进行发酵,取发酵上清液进行抗细菌、抗真菌与肿瘤细胞毒活性的测定。同时对样品进行可培养微生物的分离与生物活性测定。结果显示:不同样品类型的生物活性差异较大。在15个具有强抗活性的样品中,有5个样品分离到的单株菌均无任何生物活性,说明这5个样品的生物活性可能是由微生物的群体作用产生的,也可能是某种没有培养出的微生物产生的。初步表明了探索微生物混合培养获得生物活性代谢产物的可能性。     

具有抗哈维氏弧菌活性共生真菌HLZ-3菌株的筛选、鉴定及其培养条件

【背景】目前,海水养殖业中主要利用抗生素来防治哈维氏弧菌等病原菌,但抗生素的长期使用或滥用会对环境和人体健康带来危害,因此既环保又有效的生物防治方法具有广阔的应用前景。【目的】从海水产品共生微生物中筛选具有抗菌活性的菌株,对活性菌株进行鉴定并确定其合成抗菌活性物质的培养条件。【方法】利用沙氏和2216E培养基,以稀释涂布平板法从海水养殖动物中分离真菌和细菌;利用牛津杯法测定微生物发酵液抗水产病原哈维氏弧菌的活性;通过菌株的培养特征、形态特征和ITS序列分析对抗菌活性菌株进行鉴定;通过筛选发酵培养基的种类及盐度确定培养条件。【结果】从海蚌、白虾、海蛎子等9种样品中分离出微生物52株,其中真菌30株、细菌22株;筛选得到2株具有抗哈维氏弧菌活性的真菌菌株;其中一株活性菌株HLZ-3被鉴定为塔宾曲霉;菌株HLZ-3合成抗菌活性物质的培养条件为4%NaCl的大米培养基,28°C静置培养2周。【结论】实验结果为进一步分离纯化菌株HLZ-3所产抗菌活性次生代谢产物提供了基础。     

Antimicrobial agents

In the microbial transformation of 2-chloro-4-nitrophenol and its 2-aminotridecane compound salt, 2-chloro-4-nitrophenol was found to be degraded to four metabolites only on using strains resistant to 2-chloro-4-nitrophenol. Sensitive strains lacked this property. In the case of the 2-amino-tridecane compound salt, the first reaction produced by strains resistant to 2-chloro-4-nitrophenol was dissociation of the compound salt into the two initial components, followed by degradation of 2-chloro-4-nitrophenol. Microbial degradation resulted in diminished antifungal activity. The other antimicrobi-ally active component of the compound salt, i.e. 2-aminotridecane, was not affected by biotransformation and kept its original activity.     

The use of oxygen uptake rate to monitor discovery of microbial and enzymatic biocatalysts

Arising from the requirement for discovery of novel biocatalysts with unusual properties, a process was developed which uniquely combines aspects of continuous culture with the measurement of oxygen uptake. This adaptation of the chemostat can be used to facilitate the isolation of a number of microorganisms with desirable properties, particularly those with useful metabolic capabilities and/or enzymes. The technique was also used to provide feedback on the metabolic status of a microbial population and increase the feed flow rate (i.e., dilution rate) thereby enabling the isolation of microorganisms with enhanced 1,3‐propanediol dehydrogenase activity. The use of oxygen uptake as an indicator of cellular activity enables indirect measurement of substrate utilization and provides a real‐time online assessment of the status of microbial enrichment or evolutionary processes and provides an opportunity, through the use of feedback systems, to control these processes. To demonstrate the utility of the technique, oxygen uptake rate (OUR) was compared with a range of conventional analytical techniques that are typically used to monitor enrichment/evolutionary processes and showed good correlation. Further validation was demonstrated by monitoring a characterizable microbial population shift using OUR. The population change was confirmed using off‐line analytical techniques that are traditionally used to determine microbial activity. OUR was then used to monitor the enrichment of microorganisms capable of using a solvent (1‐methyl‐2‐pyrrolidinone) as the sole source of carbon for energy and biomass formation from a heterogeneous microbial population. After purification the microorganisms taken from the enrichment process were able to completely utilize 1 g L^?1 1‐methyl‐2‐pyrrolidinone within 24 h demonstrating that the technique had correctly indicated the enriched population was capable of growth on 1‐methyl‐2‐pyrrolidinone. The technique improves on conventional microbial enrichment that utilizes continuous culture by providing a real‐time assessment of the enrichment process and the opportunity to use the OUR output for automated control and variation of one or more growth parameters. Biotechnol. Bioeng. 2009;102: 673‐683. © 2008 Wiley Periodicals, Inc.     

Ecological Assessment and Geological Significance of Microbial Communities from Cesspool Cave,Virginia

Microbial mats from hydrogen sulfide-rich waters and cave-wall biofilms were investigated from Cesspool Cave, Virginia, to determine community composition and potential geomicrobiological functioning of acid-producing bacteria. Rates of microbial mat chemoautotrophic productivity were estimated using [ 14 C]-bicarbonate incorporations and microbial heterotrophy was determined using [ 14 C]-leucine incubations. Chemoautotrophic fixation was measured at 30.4 - 12.0 ng C mg dry wt -1 h -1 , whereas heterotrophic productivity was significantly less at 0.17 - 0.02 ng C mg dry wt -1 h -1 . The carbon to nitrogen ratios of the microbial mats averaged 13.5, indicating that the mats are not a high quality food source for higher trophic levels. Ribosomal RNA-based methods were used to examine bacterial diversity in the microbial mats, revealing the presence of at least five strains of bacteria. The identity of some of the strains could be resolved to the genus Thiothrix and the Flexibacter - Cytophaga - Bacteriodes phylum, and the identity of the remaining strains was to either the Helicobacter or Thiovulum group. Two of 10 sulfur-oxidizing, chemoautotrophic pure cultures of Thiobacillus spp. (syn. Thiomonas gen. nov.) demonstrated the ability to corrode calcium carbonate, suggesting that the colonization and metabolic activity of these bacteria may be enhancing cave enlargement.     

微生物法生产烷烃研究进展

烷烃在自然界中广泛存在。它不仅是化石能源的主要组成部分,而且在润滑剂、化妆品、水果保藏、植物防护等方面具有广泛的应用价值。本文概述了天然产烷烃的微生物及其烷烃的天然合成途径及其途径中关键酶催化的作用机理,并对近几年国内外运用代谢工程手段改造微生物使其细胞合成烷烃的研究进展作了介绍。微生物生产烷烃可以通过改造烷烃的天然合成菌株或通过在模式微生物中引入异源烷烃合成途径两种方法来强化。最后文章讨论了微生物法生产烷烃存在的不足和今后研究的方向与展望。     

Environmental significance of the potential for mer(Tn21)-mediated reduction of Hg2+ to Hg0 in natural waters.

The role of mer(Tn21) in the adaptation of aquatic microbial communities to Hg2+ was investigated. Elemental mercury was the sole product of Hg2+ volatilization by freshwater and saline water microbial communities. Bacterial activity was responsible for biotransformation because most microeucaryotes did not survive the exposure conditions, and removal of larger microbes (greater than 1 micromole) from adapted communities did not significantly (P greater than 0.01) reduce Hg2+ volatilization rates. DNA sequences homologous to mer(Tn21) were found in 50% of Hg2+-resistant bacterial strains representing two freshwater communities, but in only 12% of strains representing two saline communities (the difference was highly significant; P less than 0.001). Thus, mer(Tn21) played a significant role in Hg2+ resistance among strains isolated from fresh waters, in which microbial activity had a limited role in Hg2+ volatilization. In saline water environments in which microbially mediated volatilization was the major mechanism of Hg2+ loss, other bacterial genes coded for this biotransformation.