No isochores in the human chromosomes 21 and 22?

The human genome is described in the literature as being composed of the isochores, i.e., long (hundreds of kilobases) segments with a homogeneous (G + C) content. We calculated the (G + C) content variations along the DNA molecules of the human chromosomes 21 and 22 and found the variations to be higher everywhere compared to the randomized sequences. Hence the (G + C) content is certainly not homogeneous on the isochore scale in the two human chromosomes. In addition, we found no significant difference between the two human molecules and the genome of E. coli regarding the (G + C) content variations. Hence no isochores are either present in the DNA molecules of the human chromosomes 21 and 22, or the isochores are also present in the genome of Escherichia coli. In any case, the present communication demonstrates that the isochores should be defined in unambiguous molecular terms if they are to be used for an up-to-date genome structure characterization.     

Systematic implications of the flavonoids and chromosomes ofFlyriella (Compositae—Eupatorieae)

The leaves of five species ofFlyriella were found to contain from one to four glycosides of quercetin and its 4- and 7,4-methyl ethers. These patterns are distinct from those observed for more than seventy species ofBrickellia and support morphological and chromosomal data which indicate thatFlyriella should not be treated as an element ofBrickellia. Alternative treatments are briefly considered.     

Latitudinal clines in the grasshopper Dichroplus elongatus: Coevolution of the A genome and B chromosomes?

Argentine populations of Dichroplus elongatus (Orthoptera: Acrididae) are polymorphic for B chromosomes. Previous studies showed that B chromosomes affect body size and some fitness components in Northwestern populations. We studied phenotype and B′s variation patterns along a latitudinal cline as well as the relationship between karyotype and body size related traits in 17 populations from East. Body size related traits showed a ‘saw tooth’ pattern of variation being small at low and high latitudes and large at intermediate latitudes in most of the analysed populations. Analyses of variance and principal components demonstrated that in most analysed populations B carrier males are associated with a decrease in body size related traits with respect to individuals with standard karyotype. Accordingly with the relationship between karyotype and body size, an opposite pattern of latitudinal variation in the frequencies of B′s with respect to body size variation was observed in this area. i.e. smaller individuals tend to have a higher frequency of B chromosomes. The comparison of the differentiation of both karyotype and body size traits with molecular neutral markers demonstrated the relative importance of selection moulding chromosome and phenotype variation. The observed pattern of phenotypic variation is likely to be the result of local adaptation to season length along the latitudinal gradient. The observed contrary pattern of B′s clinal variation may reflect the population ability to maintain this chromosome in relation to the local adaptation. The available evidence indicates that the distribution of B chromosome frequency was shaped by selective factors.     

Giemsa C-banding of rye meiotic chromosomes and the nature of “terminal” chiasmata

The pattern of homologous chromosome association at metaphase I of meiosis in rye has been analysed and interpreted by means of the Giemsa C-banding procedure. The rationale for this approach stems from the unexpected coincidence of terminal Giemsa-bands in most chromosome arms and distal chiasma localisation which characterises this species. Analysis of banded metaphase I and anaphase I configurations suggests that meiotic exchanges occur proximal to the terminal Giemsa-bands, that is sub-terminally. The apparently terminal appearance of many chiasmata at metaphase I has been analysed by Giemsa-banding and shown to be more likely to result from bivalent distortion due to contraction and/or stretching (pseudoterminalisation) than from chiasma terminalisation in the accepted sense.     

Are the dot-like chromosomes in Trinomys iheringi (Rodentia, Echimyidae) B chromosomes?

In this article we review the existing cytogenetic information on the polymorphic dot-like chromosomes in Trinomys iheringi, the only species in the family Echimyidae harboring them, and provide new data on the frequency, banding properties, meiotic behavior and DNA composition of these minute chromosomes. Since no individuals lacking these chromosomes have hitherto been found, one of the main properties of B chromosomes, i.e. dispensability, has not yet been tested, so that some reasonable doubt might exist on whether they are true B chromosomes. The dot-like chromosomes were also present in the twelve new individuals analyzed, showed intraindividual variation in number, most likely due to mitotic instability during development, failed to show C-bands, showed late-replication, paired among them in meiosis, but not with the large chromosomes, and appeared to be mainly composed of telomeric DNA. These results suggest that these dot-like chromosomes might actually be mitotically unstable micro B chromosomes showing very high frequency in the natural populations thus far analyzed. But, to be confident of this conclusion, individuals lacking the dot-like chromosomes should actively be searched in future research to test their dispensability.     

Q- and C-band polymorphism of the chromosomes in a group of patients with the Shereshevski?-Turner syndrome

Q- and C-band polymorphism of heterochromatic regions of chromosomes were studied in a group of patients with Turner's syndrome (30 girls with the karyotype 45, X) and in 105 normal individuals. No significant differences in the frequencies of Q-polymorphic variants for the most part of chromosomes studied (with the exception of chromosome 13 satellites) were obtained between patients with Turner's syndrome and the control. There were no differences in the mean number of Q-variants per individual in both groups investigated. An increase in the frequency of large C-segments of chromosome 9 was detected in patients with Turner's syndrome. An increase in the frequency of individuals carrying a combination of several extreme variants in the individual karyotype was found for patients with Turner's syndrome. The differences revealed are of non-specific character for a given form of developmental pathology.     

Transmission of chromosomes through the eggs and pollen of triticale × wheat F1 hybrids

Summary The substitution patterns of rye chromosomes in hexaploid triticale × wheat F₂ hybrids, along with the transmission patterns of rye chromosomes through egg cells and pollen when several of the F₁ hybrids were test crossed to triticale and wheat were investigated. The data indicated that the rye chromosome transmission through both the egg and pollen was random in number and in composition. The test crosses suggested that it was best to use wheat pollen for the transmission of rye chromosomes through the egg cells of the F₁ hybrids and triticale egg cells for the transmission of rye chromosomes through F₁ hybrid pollen. A deviation from random segregation in the F₂ and the transmission rate was observed for rye chromosomes 1R, 4R/7R, and 6R. The transmission rates of 1R and 6R varied depending on the direction in which the cross was made. The results also indicated that there was little or no compensation between the R- and D-genomes and that the chromosomes of these two genomes appeared to be transmitted independently of each other.     

Artificial chromosomes: a blueprint for the future?

Recent developments in molecular genetics have led to the synthesis of an artificial human chromosome. Because the chromosome replicates and divides normally in human cells, this has exciting possibilities in terms of mankind's ability to influence evolutionary processes and to modify the human genome.     

Super-resolution microscopy reveals the number and distribution of topoisomerase IIα and CENH3 molecules within barley metaphase chromosomes

Chromosoma - Topoisomerase IIα (Topo IIα) and the centromere-specific histone H3 variant CENH3 are key proteins involved in chromatin condensation and centromere determination,...     

The chromosomes of the hystricomorphous family Ctenodactylidae (Rodentia: ?Sciuromorpha) and their bearing on the relationships of the four living genera

Karyotype studies support the view that modern genera of the family Ctenodactylidae originated in Africa. Karyotype differences between the genera are less obvious than morphological differences but coincide in relating Massoutiera to Felovia and deriving this line from the Pectinator -like ancestor which, in turn, was closely related to a Ctenodactylus ancestor. 43% of the chromosomes are standard throughout the family; 25% seem to be very susceptible to fragmentation, translocation and inversion. These changeable chromosomes are the only ones that show differences in their G-band patterns. The ctenodactylid karyotype resembles caviomorph karyotypes in its NF, predominantly metacentric chromosomes and in its nucleolar organiser, or marker, chromosomes.     

Should we expand the indications for analysis of fetal chromosomes?

The usual indications of amniocentesis for prenatal diagnosis are briefly reviewed. Some situations which are note included in these usual indications are discussed: mothers of 34 years, young aunts of a trisomic child, patients with a previous aborted conceptus diagnosed as trisomic by histological examination of the placenta or tissue culture. It is anticipated that, if accepted, these "unusual" criteria would not overload a given laboratory with an excess of analysis, and would certainly relief anxiety of motivated couples.     

Optical studies of the interaction of 4′-6-diamidino-2-phenylindole with DNA and metaphase chromosomes

The optical absorption and fluorescence characteristics of 4-6-diamidino-2-phenylindole (DAPI) with DNA and chromosomes were studied. There is a decrease in extinction coefficient and shift in the absorption spectra to a higher wavelength when the dye binds to DNA. The fluorescence of DAPI is enhanced by both A-T and G-C base-pairs. The enhancement by A-T rich is significantly greater than by G-C rich DNA. The dye produces a localized bright fluorescence in centromeric regions of mouse chromosomes and the constrictions of human chromosomes 1 and 16; these regions are known to contain A-T rich DNA and show dull fluorescence when treated with quinacrine. This dye may be useful for identifying A-T rich region in chromosomes. The fluorescence of DAPI bound to polynucleotides or chromosomes is partially quenched by the introduction of BrdU. This suppression of dye fluorescence allows optical detection of sister chromatid exchanges and chromosome region containing DNA with an unequal distribution of thymidine between polynucleotide chains after BrdU incorporation.     

“Homologies” between non-homologous chromosomes in the grasshopper Caledia captiva

Cytological studies of hybrids between three chromosomal forms of the grasshopper, Caledia captiva, have revealed a clear case of pairing and exchange between non-homologous chromosomes. The genomes of each of the three chromosomal forms are readily identifiable by their marked differences in morphology and in the pattern of C-heterochromatin distribution. The testes of inter-racial F₁ hybrid males contain both diploid and tetraploid meiocytes within the same individual. Multiple chromosome associations are a regular feature of all diploid cells. In many cases, these multiples involve two or more non-homologous chromosomes from within the same haploid genome. Such associations reveal unambiguous evidence of meiotic exchange and chiasmata. The X chromosome is frequently observed to associate with an autosome, and anaphase I cells provide evidence of X/autosome exchanges. A correlation exists between the position of the exchange event in non-homologous pairs and the location of heterochromatin. In tetraploid meiocytes, pairing is by strict homology only, giving rise to cells with 22 bivalents plus an XX bivalent or two univalent X chromosomes. Segregation patterns in tetraploid cells are entirely normal and result in the production of diploid gametes. In the male, the increased ploidy level was observed to arise following an endoreduplication process which takes place pre-meiotically in the spermatogonial cells. The finding that non-homologous chromosomes from within the same haploid genome can pair and cross over during meiosis clearly shows that some caution must be taken when interpreting multiple associations as evidence of interchange heterozygosity in hybrids.     

Too much to handle — how gaining chromosomes destabilizes the genome

Most eukaryotic organisms are diploid, with 2 chromosome sets in their nuclei. Whole chromosomal aneuploidy, a deviation from multiples of the haploid chromosome number, arises from chromosome segregation errors and often has detrimental consequences for cells. In humans, numerical aneuploidy severely impairs embryonic development and the rare survivors develop disorders characterized by multiple pathologies. Moreover, as many as 75 % of malignant tumors display aneuploidy. Although the exact contribution of aneuploidy to tumorigenesis remains unclear, previous studies have suggested that aneuploidy may affect the maintenance of genome integrity. We found that human cells with extra chromosomes showed phenotypes suggestive of replication defects, a phenomenon which we went on to characterize as being due to the aneuploidy-driven downregulation of replication factors, in particular of the replicative helicase MCM2-7. Thus, missegregation of even a single chromosome can further promote genomic instability and thereby contribute to tumor development. In this review we will examine the possible causes of downregulation of replicative factors and discuss the consequences of genomic instability in aneuploid cells.     

Three major lineages of Asian Y chromosomes: implications for the peopling of east and southeast Asia

DNA variation on the non-recombining portion of the Y chromosome was examined in 610 male samples from 14 global populations in north, east, and southeast Asia, and other regions of the world. Eight haplotypes were observed by analyses of seven biallelic polymorphic markers ( DYS257(108), DYS287, SRY(4064), SRY(10831), RPS4Y(711), M9, and M15) and were unevenly distributed among the populations. Maximum parsimony tree for the eight haplotypes showed that these haplotypes could be classified into four distinct lineages characterized by three key mutations: an insertion of the Y Alu polymorphic (YAP) element at DYS287, a C-to-G transversion at M9, and a C-to-T transition at RPS4Y(711). Of the four lineages, three major lineages (defined by the allele of YAP(+), M9-G, and RPS4Y-T, respectively) accounted for 98.6% of the Asian populations studied, indicating that these three paternal lineages have contributed to the formation of modern Asian populations. Moreover, phylogenetic analysis revealed three monophyletic Asian clusters, which consisted of north Asian, Japanese, and Han Chinese/southeast Asian populations, respectively. Coalescence analysis in the haplotype tree showed that the estimated ages for three key mutations ranged from 53,000 to 95,000 years, suggesting that the three lineages were separated from one another during early stages of human evolutionary history. The distribution patterns of the Y-haplotypes and mutational ages for the key markers suggest that three major groups with different paternal ancestries separately migrated to prehistoric east and southeast Asia.     

How did the platypus get its sex chromosome chain? A comparison of meiotic multiples and sex chromosomes in plants and animals

The duck-billed platypus is an extraordinary mammal. Its chromosome complement is no less extraordinary, for it includes a system in which ten sex chromosomes form an extensive meiotic chain in males. Such meiotic multiples are unprecedented in vertebrates but occur sporadically in plant and invertebrate species. In this paper, we review the evolution and formation of meiotic multiples in plants and invertebrates to try to gain insights into the origin of the platypus meiotic multiple. We describe the meiotic hurdles that translocated mammalian chromosomes face, which make longer chains disadvantageous in mammals, and we discuss how sex chromosomes and dosage compensation might have affected the evolution of sex-linked meiotic multiples. We conclude that the evolutionary conservation of the chain in monotremes, the structural properties of the translocated chromosomes and the highly accurate segregation at meiosis make the platypus system remarkably different from meiotic multiples in other species. We discuss alternative evolutionary models, which fall broadly into two categories: either the chain is the result of a sequence of translocation events from an ancestral pair of sex chromosomes (Model I) or the entire chain came into being at once by hybridization of two populations with different chromosomal rearrangements sharing monobrachial homology (Model II).     

5-Ethyl-2′-deoxyuridine: Absence of effects on the chromosomes of human lymphocytes and fibroblasts in culture

Summary In vitro studies have been performed with 5-ethyl-2-deoxyuridine (EDU) concerning its incorporation into the cell nuclear material and its effects on the chromosome morphology of cultivated human lyphocytes and skin fibroblasts. This compound is presumably incorporated in the DNA without visible chromosome aberrations as is seen with many other pyrimidine analogues. A slight inhibition of the cell growth was noted at high concentration (120g/ml) of EDU. A similar degree of cell growth inhibition was found with corresponding doses of deoxythymidine.

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Zusammenfassung Es wurden in vitro-Untersuchungen hinsichtlich des Äthyldeoxyuridineinbaus (ÄDU) und dessen Einfluß auf menschliche Lymphocyten- und Fibroblastenchromosomen durchgeführt. Diese Substanz wird in die DNS eingebaut und führt nicht zu sichtbaren Chromosomenaberrationen wie bei einigen anderen Pyrimidinanaloga. Eine leichte Hemmung des Zellwachstums wurde mit 120 g/ml ÄDU festgestellt. Eine ähnliche Hemmung des Zellwachstums ließ sich auch mit gleicher Deoxythymidinkonzentration nachweisen.

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Supported by the Deutsche Forschungsgemeinschaft.     

Mapping of the β-lactoglobulin gene and of an immunoglobulin M heavy chain-like sequence to homoeologous cattle,sheep, and goat chromosomes

With a combination of non-isotopic in situ hybridization and simultaneous fluorescent R-banding, this study presents the first map of the short arm of sheep Chromosome (Chr) 3 and of the homoeologous cattle and goat Chrs 11 with two DNA sequences: the lactoglobulin gene (LGB) and an immunoglobulin M heavy chain-like sequence (IGHML). The results are in agreement with the high degree of banding pattern similarity, previously reported, among cattle, sheep, and goat karyotypes.