The Ultrastructure of Chaenea teres and an Analysis of the Phylogeny of the Haptorid Ciliates

Chaenea teres has typical haptorid ultrastructure. The somatic monokinetid has two transverse microtubular ribbons, an overlapping postciliary microtubular ribbon, and a laterally directed kinetodesmal fiber. The evered cytopharynx forms a dome at the apical end of the cell. The base of the dome is surrounded by oral dikinetids. The left, anterior kinetosome of the oral pair is not ciliated and has a transverse microtubular ribbon, a nematodesmata and a single postciliary microtubule. The right, posterior kinetosome is ciliated and has only postciliary microtubules. The kinetosomes at the anterior ends of the somatic kinetics are close together and their transverse microtubules and nematodesmata contribute to the support of the cytopharynx. The transverse microtubules of these oralized somatic kinetosomes, together with those from the oral dikinetids, line the cytopharynx. Accessory or bulge microtubules arise perpendicular to the transverse microtubules. A dorsal brush of three kineties of clavate cilia is found on the cell surface just posterior to the oral region. Mucocysts and a single type of toxicyst are present. The toxicysts are confined to the oral region. There are multiple ovoid macronuclei that stain weakly. Micronuclei were not observed. Cladistic analysis indicates the Chaenea may be most closely related to Fuscheria and Acropisthium. The cladistic analysis also suggests that existing taxonomies of the subclass Haptoria need to be revised. We propose some modifications to Foissner & Foissner's classification that include transferring Helicoprorodon, Actinobolina, the buetschiliids, and the balantidiids to the order Haptorida and recognizing the close relationship between pleurostomes and spathidiids.     

Three-dimensional structure of the ciliate Didinium nasutum nucleoli

The nucleolar organization in ciliate Didinium nasutum somatic interphase nuclei was studied using serial ultrathin sections and compared for various physiological states of the cell, namely, fed ciliates, starved ciliates, and dormant cysts. It has been shown that the interphase nucleoli are large structures with a complex architecture: the fibrillar component forms an intricate network in the macronucleus space, while the granular component is located inside this network. The structures looking as individual nucleoli in single sections are actually parts of branched nucleolar networks. The intricate nucleolar networks do not disintegrate after a 30-h starvation; however, the granular component becomes denser and develops numerous cavities filled with fine fibrils of a nonribonucleoprotein nature. In fed D. nasutum, the fibrillar structures on the periphery of nucleoli contain numerous pores (virtually absent in starved cell nucleoli), which can potentially serve for transporting newly synthesized rRNP. Branched nucleolar networks are undetectable in cysts. Their nucleoli are individual structures consisting mainly of the fibrogranular component.     

Ultrastructure of the micronucleus of the infusorian Didinium nasutum during meiosis]

Six stages can be distinguished in the micronuclear first maturation division prophase of D. nasutum. Nucleolus-like structures of fibrillar nature, connected with micronuclear chromosomes seem to develop at the late leptotene. At zygotene-pachytene, the chromosomes condense, forming irregular loops. This coincides with formation of classically structured synaptinemal complexes in the micronuclei. At diplotene-diakinesis, chromosomal bivalents are uniformly scattered throughout the micronucleus. They aggregate into a net equatorial plate in the first division metaphase; chromosomes show prominent kinetochores with attached chromosomal microtubule bundles. The second maturation division starts immediately after the completion of the first division and is morphologically similar to agamic mitosis of the micronuclei of D. nasutum. During the 2th maturation division prophase, the compact chromosomes form a dense group and show no spreading inside the nucleus. They are interspaced by an amorphous material being possibly involved in the formation of spindle microtubules. The telophase spindle of the 2nd division likely as that of the Ist division divides into three parts, the two daughter nuclei and the separation spindle containing a material of depolymerized microtubules. Only one of the 2nd division derivatives enters the third maturation division. A short telophasic third division spindle is perpendicular to the surface of the contact between the conjugants and produces two pronuclei. The envelopes of the daughter micronuclei are formed from parts of the original nuclear envelope surrounding the entire spindle.     

The Size of DNA Molecules and Chromatin Organization in the Macronucleus of the Ciliate Didinium nasutum (Ciliophora)

Pulsed‐field gel electrophoresis (PFGE) was applied to analyze the molecular karyotype of the ciliate Didinium nasutum. The data obtained indicate that D. nasutum belongs to the ciliate species with subchromosomal macronuclear genome organization. No short “gene‐sized” DNA molecules were detected. Macronuclear DNAs formed a continuous spectrum from 50 kbp to approximately 1,000 kbp in size with a peak plateau between 250 and 400 kbp. The macronuclear DNA molecules were packed into chromatin bodies of 80–265 nm in size. Comparison of the PFGE and electron microscopic data shows that most if not all chromatin bodies contain more than one DNA molecule.     

纤毛虫分子系统发育学的研究进展

在回顾纤毛虫分子系统发育学产生发展历史的基础上,介绍了随着20年中RFLP、RAPD和DNA序列分析等分子生物学技术作为该学科的主要研究方法在种群遗传多样性与进化、种上阶元系统发育学两方面取得的研究成果和近期研究进展,最后在探讨纤毛虫分子系统发育学存在的一些问题和解决方法的同时,预测了纤毛虫分子系统发育学今后将极大地推动真核生物的起源与进化,内共生等重要生物进化问题的研究。     

A Family Level Analysis of Tardigrade Phylogeny

In the present study a character data set suitable for cladistic analysis at the family level was developed. A data matrix consisting of 50 morphological characters from 15 families of tardigrades was analyzed by maximum parsimony. Kinorhynchs, loriciferans, and gastrotrichs were used as outgroups. The results agree with the currently accepted hypothesis that Eutardigrada and Heterotardigrada are distinct monophyletic groups. Among the eutardigrades, Eohypsibiidae was found to be a sister group to Macrobiotidae+Hypsibiidae, while Milnesiidae was the basal eutardigrade family. The basal heterotardigrade family was found to be Oreellidae. Echiniscoideans grouped with some traditional Arthrotardigrada (Renaudarctidae, Coronarctidae+Batillipedidae) suggesting that the arthrotardigrades are not monophyletic. The 18S rRNA gene sequence of Batillipes mirus Richters, 1909 and Calohypsibius schusteri Nelson & McGlothlin, 1996 were obtained and their addition to a previously published dataset supports the monophyly of Heterotardigrada and of Parachela versus Apochela within the Eutardigrada.     

Phylogeny of the Afro-Madagascan Aristea (Iridaceae) revisited in the light of new data on pollen morphology

Scanning and electron microscopic studies of the pollen grains of several species of the sub-Saharan African and Madagascan genus Aristea of c . 50 species, supplement data from an earlier study and enable us to include these species in a phylogenetic analysis. TEM examination of a range of pollen grains of representative pollen types in Aristea makes it possible to reinterpret past SEM results so that apertures covered with exine masses and previously called sulculate, are now seen to be either zonasulculate or dizonasulculate. Revised and expanded data are combined in a matrix together with new data for seed morphology in the genus, which like the capsules is remarkably diverse, including angular seeds with reticulate sculpturing, lamellate or triangular-columnar seeds with smooth or reticulate surfaces and with smooth or papillate or areolate margins. This new phylogenetic analysis suggests that Aristea should remain treated as comprising three subgenera. In subgenus Eucapsulares we add a new section Latifolieae for A. latifolia , which seems an isolated relic restricted to the mountains of the Cape Region of South Africa, an area of winter rainfall. Species with similar unspecialized capsule and seed morphology occur only in eastern south and tropical Africa and Madagascar, but they have derived pollen morphology whereas the pollen of A. latifolia is plesiomorphic. This species appears to be the closest living ancestor of the genus. In subgenus Aristea we continue to recognize three sections, sect. Racemosae , sect. Singulares and sect. Aristea. Nesting of subgenus Pseudaristea within section Racemosae of subgenus Aristea is probably an artefact of the analysis and does not receive bootstrap support, and hence we continue to recognize this group of species at subgeneric rank.  © 2004 The Linnean Society of London, Botanical Journal of the Linnean Society , 2004, 144 , 41–68.     

Changes in the Cell Volume of Didinium nasutum During Population Increase*

SYNOPSIS. In 3 species of carnivorous protozoa, the rate of individual food intake per generation declines with an increase in the density of the population. In all, the rate of division remains constant. Three hypotheses may be proposed to explain these phenomena: the individual size decreases, thus bringing about a decline in food need; the individuals in the earlier stages of population growth consume excess food which is passed on to later generations to supplement their food intake; an increase in density within the carnivore population decreases the activity rate, thus reducing the food requirement. Experiments using Didinium nasutum as the carnivore and Paramecium aurelia, syngen 4, as the food source were conducted to test these 3 hypotheses. The results contradicted the 1st hypothesis and part of the 2nd. A new working hypothesis based on the remaining hypotheses is proposed.     

Ultrastructure of Prorodon (Ciliophora, Prostomatida) I. Somatic Cortex and Some Implications Concerning Kinetid Evolution In Prostomatid and Colpodid Ciliates

ABSTRACT. This study describes the ultrastructure of the somatic cortex of Prorodon aklitolophon and Prorodon teres. the meridionally arranged somatic kineties of both species can be separated into two parts: a short anterior part, which consists of a few somatic dikinetids (in which both kinetosomes are ciliated), and a longer posterior consisting of monokinetids. the somatic monokinetids are associated with a convergent postciliary microtubular ribbon, a transverse microtubular ribbon flatly inserted in front of the kinetosome, a short and steeply extending kinetodesmal fibre attached to kinetosomal triplet 5 and 7, and a desmose anterior to triplet 3. From this desmose, two to five prekinetosomal microtubules originate and extend anteriorly. the posterior kinetosome of the somatic dikinetids is associated with the same microfibrillar and microtubular structures as the somatic monokinetid, except that no prekinetosomal microtubules originate from the desmose. the anterior kinetosome has a single postciliary microtubule and a tangentially oriented transverse microtubular ribbon. the permanent collecting canals of the unique contractile vacuole system extend parallel and adjacent to the somatic kinetics of Prorodon . the collecting canals are supported by the prekinetosomal microtubules. A similarly organized contractile vacuole system is not yet known from any other ciliate group. One of the most surprising results of this investigation was finding a significant similarity between the somatic dikinetid pattern of Prorodon and the colpodid dikinetid pattern. A hypothesis is presented to illustrate the evolution of the somatic kinetid patterns in colpodid and prostomatid ciliates.     

Phylogeny of Early Cretaceous spatangoids (Echinodermata: Echinoidea) and taxonomic implications

A phylogenetic analysis of 36 species provides a test for the taxonomy and the history of Early Cretaceous spatangoids. Most taxonomic units from genera to suborders are consistent with the proposed phylogenetic framework. We retain Hemiasterina, Micrasterina, Hemiasteridae, Schizasteridae, Hemiaster , Heteraster , Mecaster , and Periaster as original monophyletic groups. However, all of these clades originate without the classical apomorphies normally ascribed to them. We suggest a revision of their diagnoses and of the generic attributions of basal species. Some ill-defined, 'primitive', and paraphyletic taxa are recognised: Toxaster , Epiaster , Palhemiaster , and Toxasteridae. Even if they do not have phylogenetic meaning, they are retained here, pending a more complete revision.     

Phylogeny and evolutionary history of diplobathrid crinoids (Echinodermata)

Order Diplobathrida is a major clade of camerate crinoids spanning the Ordovician–Mississippian, yet phylogenetic relationships have only been inferred for Ordovician taxa. This has hampered efforts to construct a comprehensive tree of life for crinoids and develop a classification scheme that adequately reflects diplobathrid evolutionary history. Here, I apply maximum parsimony and Bayesian phylogenetic approaches to the fossil record of diplobathrids to infer the largest tree of fossil crinoids to date, with over 100 genera included. Recovered trees provide a framework for evaluating the current classification of diplobathrids. Notably, previous suborder divisions are not supported, and superfamily divisions will require significant modification. Although numerous revisions are required for families, most can be retained through reassignment of genera. In addition, recovered trees were used to produce phylogeny‐based estimates of diplobathrid lineage diversity. By accounting for ghost lineages, phylogeny‐based richness estimates offer greater insight into diversification and extinction dynamics than traditional taxonomy‐based approaches alone and provide a detailed summary of the ~150 million‐year evolutionary history of Diplobathrida. This study constitutes a major step toward producing a phylogeny of the Crinoidea and documenting crinoid diversity dynamics. In addition, it will serve as a framework for subsequent phylogeny‐based investigations of macroevolutionary questions.     

Secondary Structure of the ITS1 Transcript and its Application in a Reconstruction of the Phylogeny of Boraginales

Abstract: In this study, we present the possibilities for calculating systematic relationships on higher taxonomical levels based exclusively on ITS1. This is demonstrated for Boraginales (Boraginaceae s.str., Cordiaceae, Ehretiaceae, Heliotropiaceae, Hydrophyllaceae and Lennoaceae). Secondary structure of the ITS1 region is more conserved than the primary structure (i.e., sequence itself) and is therefore a tool for optimizing alignments. It increases the number of structural characters. Information inferred from the secondary structure enables us to construct well-resolved phylogenetic trees at higher taxonomic levels. A general secondary structure of ITS1 for Boraginales, with four major helices, is proposed here. In each subtaxon, derivations from this structure are found. The paraphyly of Boraginaceae s.l. is evident from both a comparison of secondary structures and from bootstrap analysis. Boraginaceae s.str. are the sister group of a clade formed by Hydrophyllaceae, Cordiaceae, Ehretiaceae, Heliotropiaceae and Lennoaceae. The last four taxa constitute a monophyletic group which is the sister group of Hydrophyllaceae. Lennoaceae are closely related to Ehretiaceae, and these two taxa in turn are the sister group of Cordiaceae.     

The Phylogeny and Systematics of Blind Cambrian Ptychoparioid Trilobites

The paraphyletic trilobite suborder Ptychopariina includes a large proportion of Cambrian trilobite diversity and is probably ancestral to most groups of post-Cambrian trilobites. Resolution of the phylogenetic relationships within the group is therefore crucial to a better understanding of the initial radiation of trilobites. The recognition of approaches that can successfully resolve the relationships of ptychoparioid taxa is an important first step towards this aim. Cladistic analysis was used to determine relationships within the Cambrian ptychoparioid trilobite family Conocoryphidae, and to test claims that the family is polyphyletic. Ninety-seven characters were coded for 40 conocoryphid species and nine non-conocoryphids. The results indicate that the family consists of four distantly related clades. Three are recognized here as distinct families, including an extensively revised Conocoryphidae, and the families Holocephalidae and Atopidae. The fourth clade is referred to the subfamily Acontheinae (Corynexochida) as the new Tribe Hartshillini. Analysis of the disparity of these four clades shows that they are significantly less morphologically variable than the original polyphyletic taxon, demonstrating the possible effects of taxonomic error on macroevolutionary studies of morphological disparity.     

Phylogeny of the Poorly Known Ciliates,Microthoracida, a Systematically Confused Taxon (Ciliophora), with Morphological Reports of Three Species

Three species of Microthoracids, Lopezoterenia paratorpens n. sp., Trochiliopsis australis Foissner et al., 1988 and Discotricha papillifera Tuffrau, 1954, collected from Chinese coastal waters, were investigated using live observation and protargol staining methods. Lopezoterenia paratorpens n. sp. was characterized by its squarely shaped cortical papillae and by dorsal kineties which contained loosely distributed basal bodies. Trochiliopsis australis was revealed to have two oral membranelles, which was not recorded in the original report. Phylogenetic analyses were carried out based on SSU rRNA gene sequence data from each of the three species, and on other available data for microthoracids. The results showed that the order Microthoracida is not monophyletic because the family Discotrichidae, which contains L. paratorpens and D. papillifera, forms a clade separated from the “core” Microthoracids clade. The topologies of the maximum likelihood and Bayesian inference trees, along with the distinct morphological characteristics found previously, suggest that the family Discotrichidae should not be assigned to the order Microthoracida. We propose to designate a new order, Discotrichida n. ord. which diagnosed as: flattened ciliates with conspicuous cortical papillae on both dorsal and ventral faces, rod‐shaped mucocysts, and an asymmetric cytopharyngeal basket. Also, the fact that Leptopharynx clusters with the assemblage including T. australis, and Pseudomicrothorax is located distantly from Leptopharynx indicates that the classification of Pseudomicrothoracidae and Microthoracidae by Foissner (1985) is justified.     

Phylogeny and systematic revision of Eocene Cricetidae (Rodentia,Mammalia) from Central and East Asia: on the origin of cricetid rodents

The origin of the Cricetidae and the relationships among earliest species from Central and East Asia are still disputed. The taxonomic status of some Eocene cricetid taxa is also doubtful. A parsimony analysis based on 65 cranial and dental characters and including 22 early Myomorpha was performed to elucidate these issues. As a result, the North American Elymys, known as the first Myodonta, belongs to dipodoid rodents, although it shares a suite of characters with the first cricetids. This implies that the split between dipodoids and muroids occurred in North America during the early middle Eocene, as previously supposed. The disputed Simimys and Nonomys could constitute an early dipodoid radiation. It appears that the earliest offshoot of the cricetid clade is the Asian genus Palasiomys. This taxon has a more advanced cricetid plan than contemporaneous dipodoids. The genus Raricricetodon no longer exists here because it is polyphyletic; the species are included in Palasiomys (P. minor, P. trapezius) and Pappocricetodon (P. zhongtiaensis). The genus Pappocricetodon displays a complete cricetid plan associated with both the loss of P⁴ and the development of an anterocone on M¹. The disputed genera Eocricetodon and Oxynocricetodon characterize the beginning of the Oligocene radiations of Eucricetodontinae throughout the Holarctic continents.     

Seed morphology and taxonomy of the North African species of Sideritis L. (Lamiaceae)

REJDALI, M., 1990. Seed morphology and taxonomy of the North African species of Sideritis L. (Lamiaceae). Seed morphology data are shown to support data from general morphology and palynology; they can be used for taxonomy at the sectional and specific levels. At times clear differences are apparent at the infraspecific level. Seed sculpturing was found to be of great value for separating taxa at all levels of the hierarchy.