Evidence that Kenyan House Sparrows Passer domesticus invaded from multiple sites

Here we characterize genetic patterns across the range of House Sparrows in Kenya using six microsatellite markers. We screened House Sparrows from two remote locations in northern Kenya, Marsabit (n = 24) and Wajir (n = 27), which are separated from other colonized areas in Kenya by minimally developed, arid habitat, and then compared these birds with House Sparrows in 10 more central and longer established Kenyan cities (n = 233) in this range. House Sparrows from Marsabit and Wajir originated from a separate source, probably Somalia and/or Ethiopia, from other Kenyan House Sparrows, probably Mombasa. Furthermore, the genetic characteristics of northern and southern populations indicate that they have not yet mixed, supporting a hypothesis that the large, minimally (human) developed, arid landscape spanning nearly all of northern Kenya, including the 100 000 km² Chalbi Desert, is a barrier to dispersal for House Sparrows.     

Phytogeographical relations of the Andean dry valleys of Bolivia

Aim The objective of this study is to examine the phytogeographical affinities of the Andean dry valleys of Bolivia in order to contribute to a better understanding of the Andean dry flora's distribution, origin and diversity. Particular emphasis is given to the analysis of the floristic connections of this flora with more austral parts of South America. Location The dry valleys of Bolivia are located in the Andes of the southern half of the country, at elevations between 1300 and 3200 m. Methods An extensive floristic list compiled by the author to evaluate plant diversity in these Andean regions was used as the base for this study. To accomplish this, all recorded genera and species were assigned, respectively, to 11 and 12 phytogeographical elements established previously by the author. Two phytogeographical spectra were thus obtained and analysed. Results At the genus level, the Andean dry valleys of Bolivia are clearly dominated by genera that have widespread distributions (cosmoplitan and subtropical genera). Many of these reached the Andes from the lowland region of the Chaco. At species level, Andean elements constitute more than 60% of the species total, most of which are restricted to the central‐southern Andes. This suggests that Chaco‐related and Andean genera had considerable levels of speciation in these valleys. Many genera and more than half the species have their northernmost distribution in the dry valleys of Bolivia, thereby underlining strong relationships with central‐southern South America (mainly Argentina, Paraguay and southern Brazil). The data supports the belief of the existence, in central‐southern Peru, of a floristic disjunction in dry to arid environments that separates a tropical dry flora north of this limit from a dry subtropical/warm temperate flora south of it. Main conclusions The Andean dry valleys of Bolivia are diverse plant communities with high levels of endemism (c. 18% of the species). The species of this region are more related to those present in central‐southern South America than to the flora of northern South America that ranges southwards to Peru. Many of the species have restricted distributions in the dry Andes of Bolivia and Argentina, and many genera of these dry valleys have their northernmost distribution in Bolivia/southern Peru, too. The data point to high levels of speciation also in the central Andes.     

Seasonal variation and age-related correlates of Buggy Creek virus (Togaviridae) infection in nestling house sparrows

Wild birds are rarely found with active arbovirus infections, and relatively little is known about the patterns of viremia they exhibit under field conditions or how infection varies with date, bird age, or other factors that potentially affect transmission dynamics. Buggy Creek virus (BCRV; Togaviridae, Alphavirus) is an arbovirus associated with colonially nesting Cliff Swallows (Petrochelidon pyrrhonota) and transmitted by its vector, the hematophagous swallow bug (Oeciacus vicarius), an ectoparasite of the Cliff Swallow. Introduced House Sparrows (Passer domesticus) that have occupied swallow nests at colony sites in peridomestic settings are also exposed to BCRV when fed upon by swallow bugs. We used data from 882 nestling House Sparrows in western Nebraska from 2006 to 2008 to examine seasonal variation and age-related correlates of virus infection in the field. Over 17% of nestling House Sparrows had active infections. Prevalence was higher in 2007 than in 2008 when birds from all colony sites were analyzed, but there was no significant difference between years for sites sampled in both seasons. Buggy Creek virus prevalence was similar in early and late summer, with a peak in midsummer, coinciding with the greatest swallow bug abundance. Nestlings 10 days of age and younger were most commonly infected, and the likelihood of BCRV infection declined for older nestlings. Average viremia titers also declined with age (but did not vary with date) and were high enough at all nestling ages to likely infect blood-feeding arthropods (swallow bugs). Length of viremia for nestlings in the field was ≥4 days, in agreement with an earlier study of BCRV. Nestling birds offer many advantages for field studies of arbovirus amplification and transmission.     

The prevalence of avian haemosporidian parasites in an invasive bird is lower in urban than in non-urban environments

Urbanization affects the ecology of wildlife diseases and although it has been suggested that there are lower risks of infection in urban areas, there have been no experiments to support this conclusion. We assessed haemosporidian prevalence and intensity in House Sparrows Passer domesticus using field and experimental data under contrasting conditions (i.e. urban vs. non-urban). For experimental data, we kept 32 male House Sparrows in captivity as a proxy of stress, and for field data we sampled 49 House Sparrows (17 females). We made use of microscopy to determine the relative intensity and used the polymerase chain reaction to estimate infection prevalence. We obtained total leucocyte counts, leucocyte differentials, heterophil/lymphocyte ratio (H/L) as a measure of stress, and the Polychromatic Index as a measure of physiological condition (erythropoiesis). We identified a total of 10 haemosporidian lineages. For field samples (both males and females), we found a significantly higher prevalence of infection in non-urban House Sparrows than in urban ones. Under experimental conditions, non-urban House Sparrows showed a higher prevalence than urban ones both before and after captivity, with a significant increase in parasite intensity. The number of infected birds increased after captivity for both urban (~ 32%) and non-urban House Sparrows (~ 19%), indicating either a recrudescence of chronic and relapses of latent infections or the appearance of infections that had been acquired earlier. The H/L ratio was significantly higher for non-urban than for urban male House Sparrows before captivity. No difference in H/L was found for urban House Sparrows before and after captivity, indicating tolerance to city stressors. Our results showed a significant decrease in H/L for non-urban birds after captivity, suggesting higher stress in the non-urban agricultural environment. Haemosporidian infections were not associated with the H/L ratio. Our study provides evidence that highly urbanized areas within cities represent lower haemosporidian infection risks than do non-urban areas for House Sparrows.     

The House Sparrow Passer domesticus in urban areas: reviewing a possible link between post-decline distribution and human socioeconomic status

The House Sparrow Passer domesticus is traditionally associated with human habitation. However, the species has undergone dramatic declines in many urban areas in north-western Europe. There are many theories as to why this decline has occurred, but the lack of data on House Sparrow numbers prior to their decline has hampered efforts to investigate these theories in detail. This review summarises the demographic changes in urban House Sparrow populations since the 1970s, and considers evidence that the current distribution of House Sparrows may reflect changes in urban habitats caused by socioeconomic change. Evidence is mounting that, within urban landscapes, House Sparrows appear to be more prevalent in areas with a relatively low human socioeconomic status. Here, we present evidence to suggest that House Sparrows may have disappeared predominantly from more affluent areas, and that these areas are more likely to have undergone changes to habitat structure. We also show how these changes in habitat could influence House Sparrow populations via impacts upon nesting success, foraging and predation risk.     

Changes in the House Sparrow Passer domesticus population in Valencia (Spain) from 1998 to 2008

Capsule The population of House Sparrow Passer domesticus has experienced a sharp decline in the municipality of Valencia.

Aims To investigate the population trends of House Sparrows.

Methods Between September 1998 and December 2008, House Sparrows were censused monthly in 22 urban parks covering a total of 118 ha. Additionally, birds in the wider urban landscape were censused in 24 plots of about 50 ha during the winter and spring of years 1998, 2003 and 2007.

Results The House Sparrow population experienced a significant decline of about 70% over 10 years in urban parks, with monthly peak values decreasing from about 2000 birds in 1998 to about 500 in 2008. Between 1998 and 2007, a significant decline was detected in the urban landscape mostly during the winter.

Conclusions Urban parks are a main feeding habitat for House Sparrows, and habitat structure of urban parks has remained similar throughout these years. Therefore, the decreasing number of sparrows recorded in parks probably reflects an overall population decline of the species in Valencia. This decline has coincided with high‐intensity urban development i.e. an increase in the building density and a reduction in the amount of wastelands and other feeding habitats. Thus, shortage of nest‐sites did not seem to be a limiting factor for the population, but a reduction of food availability may be partially responsible for the observed patterns.     

Solanum Tuber-bearing Species Resistance Behavior Against Nacobbus aberrans

Naccobus aberrans is a major pest of the potato crop in the Andean regions of Argentina, Bolivia, and Perú. It is endemic in northwest Argentina and is also found in lowlands. The resistance of eleven Andean potato landraces and three accessions of the wild tuber-bearing species Solanum acaule, S. infundibuliforme, and S. megistacrolobum were evaluated against a population of N. aberrans from Coctaca, Jujuy province, while Solanum tuberosum ssp. tuberosum 'Spunta', 'Kennebec', and 'Frital INTA' were evaluated against a population from the southeast of Buenos Aires province. The presence, the number of galls, and the number of individuals were recorded. In addition, a reproduction factor was calculated and races were determined. Results showed that the N. aberrans population from Coctaca corresponded to race 2 and the population from the lowlands belonged to the sugar beet group. Landrace Azul, one genotype of S. megistacrolobum, and two genotypes of S. acaule showed resistance towards the race from Coctaca while no infection was recorded in potato cultivars with the Naccobus race from the lowland area.     

Extra-pair fertilizations in Tree Sparrows Passer montanus

Females of socially monogamous bird species frequently accept or solicit copulations from males other than their social mates. At the interspecific level, it has been proposed that species with few or no sexual plumage differences have lower levels of extra-pair fertilizations (EPFs) than more dichromatic species. This is because it is easier for females to assess the quality of extra-pair mates in dichromatic than monochromatic species. To test this, by using genetic profiling, we compared the occurrence of extra-pair young in nests of Tree Sparrows Passer montanus , a monochromatic species, in Switzerland and Spain, with published estimates for the House Sparrow Passer domesticus , a closely related dichromatic species. We found that 25% (10/40) of Tree Sparrow broods in Spain and 23% (8/35) in Switzerland had at least one extra-pair offspring, and that 8% (12/151) of nestlings in Spain and 10% (12/114) in Switzerland were sired by extra-pair mates. These proportions did not differ significantly between the two populations. Tree Sparrow EPF rates did not differ significantly from available data for the House Sparrow, either in the proportion of broods with EPF young (24%, 18/75 in Tree vs. 26%, 92/359 in House Sparrows) or the overall proportion of extra-pair young (9%, 24/265 in Tree vs. 11%, 142/1110 in House Sparrows). Our results suggest that a close taxonomic relationship and similarities in behaviour and ecology may be more important in determining levels of EPF in these species than sexual phenotypic differences.     

Interspecific competition between introduced house finch populations and two associated passerine species

Summary House Finches (Carpodacus mexicanus), natives of western North America, have expanded their range in the eastern United States since their 1940 release in New York City. Range and the relation of House Finch population growth to the population dynamics of House Sparrows (Passer domesticus) and Purple Finches (Carpodacus purpureus) were examined, using data from the Breeding Bird Survey and the Christmas Bird Count. The House Finch population grew exponentially throughout its eastern range. Significant negative relationships in population density, relative to spatial and temporal control populations, were found between House Finches and House Sparrows in summer and winter, and between House Finches and Purple Finches in summer. Purple Finch and House Sparrow populations outside of the House Finch range appeared to have no effect on each other throughout the study. Neither changes in 74 weather variables, nor changes in forest, field or developed habitat explained the observed trends in population density. The results indicate that House Finches compete with these two species, but winter migration complicates the picture.     

Population status of Andean Condors in central and southern Bolivia

Andean Condors (Vultur gryphus) are a Near Threatened species that was formerly distributed along the entire length of the Andes from western Venezuela to Tierra del Fuego. Populations have been severely reduced north of Peru, but several thousand Andean Condors still exist in the southern portion of their range in Argentina and Chile. Little is known, however, about the size of the Andean Condor population in the central part of their range in Peru and Bolivia. From June to September 2012, we used feeding stations to attract Andean Condors and estimate the size and structure of the population in the eastern Andes of central and southern Bolivia. We estimated a minimum population of 253 condors, an adult male‐to‐female ratio of 1:0.6, an immature male‐to‐female ratio of 1:0.9, and an adult‐to‐immature ratio of 1:1.1. At our five survey areas, estimated abundance ranged from 15 to 100 condors per area. Males outnumbered females in three areas and the opposite was true in two areas. Our estimated adult‐to‐immature ratio, overall and in each area, suggests that the populations could be reproducing at a high rate. As previously observed in other Andean Condor populations, skewed sex ratios could be associated with differences between sexes and age classes in habitat selection. Although our results suggest that Bolivian populations of Andean Condors are still reasonably large, population monitoring is urgently needed, including use of feeding stations throughout the entire Bolivian range of the species and intensive searches for roosting and nesting sites.     

Integrative taxonomy reveals cryptic Amazonian species of Pristimantis (Anura: Strabomantidae)

Hypotheses on the taxonomic status of two Bolivian Pristimantis with taxonomic problems are assessed by an integrative taxonomic approach that integrates three independent lines of evidence: external morphology, prezygotic reproductive barriers (advertisement calls) and reciprocal monophyly (phylogenetic analyses of partial 16S mtDNA sequences). Central Andean Bolivian populations previously assigned to either P. peruvianus or P. dundeei, and lowland Amazonian populations from southern Peru and northern Bolivia previously considered P. peruvianus do not correspond to these species. Indeed, multivariate analyses of qualitative and quantitative morphological and bioacoustic characters, and phylogenetic analyses support the hypothesis that they represent different, previously unknown, cryptic lineages. They are herein described as new species. The former is a sibling species of P. fenestratus that inhabits the Amazonian and semideciduous forests of the Andean foothills in central Bolivia. The latter is sibling to the Andean species P. danae and is parapatric to it in the Amazonian lowland forests and adjacent foothills of northern Bolivia, southern Peru and adjacent Brazil. Most species of Neotropical frogs, and especially Pristimantis, have been described by using external qualitative morphological characters only. An extended integrative taxonomic approach, as exemplified herein, may lead to the discovery of many other cryptic and sibling lineages that would increase the species numbers of tropical areas. © 2009 The Linnean Society of London, Zoological Journal of the Linnean Society, 2009, 155 , 97–122.     

Phylogenetic and biogeographic relationships of the mouse opossum Thylamys (Didelphimorphia,Didelphidae) in southern South America

Nucleotide sequence data from the mitochondrial cytochrome b gene were used to evaluate the phylogenetic relationships among mouse opossum species of the genus Thylamys. Based on approximately 1000 bp in five of the six species of the genus and including different localities for some of the species, we concluded that T. macrura from the subtropical forests of eastern Paraguay is the most primitive taxon. Subsequent radiation of the genus is explained mainly via founder effect speciation. This evolutionary scenario would account for the speciation of T. pusilla, T. venusta, T. pallidior, and T. elegans in the Chaco, southern Bolivia and northern Argentina, the Andean Altiplano, the Coastal Desert of Chile, and coastal Perú, respectively. Calibration of a molecular clock set the Pleistocene as the period for the differentiation of Thylamys species. The molecular results confirm the strong genetic connection between populations that inhabit the "pre-cordillera" of northern Chile (T. pallidior) and the canyons that run through the Atacama Desert to the lowlands in northern Chile. Our results confirm the occurrence of two Thylamys species in Chile, T. pallidior and T. elegans, within and south to the Atacama Desert, respectively.     

Risk‐taking and survival in the House Sparrow Passer domesticus: are plumage ornaments costly?

An important cost of sexual and social colour signals may be increased conspicuousness of the animals to visual predators. Although such predation costs have repeatedly been proposed for various ornaments of birds, especially for melanised and depigmented signals with low presumed production costs, tests of this hypothesis are rare and inconclusive. In this study we investigated whether individual variation in plumage ornamentation was associated with predator-related risk-taking behaviour and short-term survival in free-living House Sparrows Passer domesticus . In a large sample of birds we measured three aspects of coloration used in sexual and social signalling: the size of the melanised black throat patch in males, and the area and conspicuousness of the depigmented wing-bar in both sexes. We measured risk-taking by manipulating the distance of feeders from shelters, and recorded individually ringed birds feeding close to and far from shelter. Sparrows seemed to perceive the farther feeders as more risky, as indicated by the shorter time spent and smaller groups feeding far from rather than close to shelter. However, the use of the more risky (farther) feeders was not related to any of the colour traits we measured, suggesting that Sparrows do not adjust their risk-taking behaviour to their ornamentation. Males (the more ornamented sex) did not take less risk than females. Furthermore, we found no evidence that larger throat patches or more ornamented wing-bars reduced the probability of survival. Our findings were robust and consistent across multiple approaches, even when we controlled for several potential confounding effects. These results do not support the suggestion that melanised and depigmented plumage ornaments have significant predation costs in House Sparrows.     

Single origin and subsequent diversification of central Andean endemic Umbilicaria species

We studied an Andean endemic group of species of the lichen-forming fungal genus Umbilicaria from the subalpine and low-alpine zone, with their biogeographic center in Bolivia and Peru. A number of species and varieties have been described from this element, but apparent instability in several morphological traits has made it difficult to precisely delimit taxa. Based on DNA sequences of nuclear ITS, LSU and mitochondrial SSU from extensive collections from Argentina, Bolivia, Chile, Colombia, Ecuador and Peru, we present here a molecular phylogenetic analysis of this Andean endemic element within genus Umbilicaria. All analyses (MP, ML and Bayesian) support a single origin for the element and a division into two major groups characterized by different apothecium types: the Umbilicaria dichroa group and U. calvescens group. Taxa U. krempelhuberi, U. peruviana and U. subcalvescens are nested withinn U. calvescens and are treated as conspecific with the latter species. The endemic element shares a most recent common ancestor with the Umbilicaria vellea group, which has a worldwide distribution and contains several asexually reproducing (sorediate) species. Independent reversals to sexual reproduction might explain the evolution of two types of apothecia in this monophyletic endemic lineage. A number of cosmopolitan, mostly high-alpine, species of Umbilicaria also present in the central Andes are related only remotely to the endemic element and do not exhibit speciation into endemics. Because the An-dean element dominates the Umbilicaria habitats of the low- and subalpine zones we propose that the founder colonized the Andes at a time when the mountains had not yet reached their current elevation while the high-alpine species arrived more recently.     

Relationship between the presence of House Sparrows (<Emphasis Type="Italic">Passer domesticus</Emphasis>) and Neotropical bird community structure and diversity

Invasive exotic species pose an important threat to biodiversity worldwide. However, there is little information on the effects that specific exotic bird species have on native biota. The House Sparrow is an excellent ecological model to evaluate the effect that an invasive exotic species has on native bird communities. Our study describes the relationship of the presence and abundance of House Sparrows with the structure, diversity, and composition of native bird communities in West Mexico. We used two approaches to compare House Sparrow invaded and non-invaded bird communities: (1) at a small geographic-scale that allowed us to evaluate shifts in avian communities with presence of the House Sparrow under similar environmental conditions; and (2) at the landscape-level to evaluate the effect of this species under a scenario of greater environmental heterogeneity. Results from both approaches show that areas invaded by House Sparrows have heavily-dominated avian communities with low species richness, while non-invaded areas exhibit highly-even and species-rich bird communities. Species turnover analysis indicates that the decrease in the number of bird species in House Sparrow invaded areas is caused by species loss, rather than a shift in species composition. Our results indicate that the invasion of an area by the House Sparrow, through synergistic interactions with human activities, determines the composition, structure, and diversity of native bird communities.     

Invertebrate prey availability limits reproductive success but not breeding population size in suburban House Sparrows Passer domesticus

Factors affecting avian demography and abundance in urban landscapes are poorly understood and this hinders attempts to manage urban bird communities. Several recent studies indicate that lack of invertebrate prey in urban landscapes may constrain avian productivity and fitness relative to that in other habitats. House Sparrow Passer domesticus populations have undergone large declines in many European urban centres and inadequate reproductive success linked to invertebrate availability has been postulated as a potential cause of these declines. We conducted a replicated supplementary feeding experiment to test whether the availability of invertebrate prey limits the breeding success and adult abundance (colony size) of House Sparrows in suburban London, where House Sparrow populations declined by 60% during the decade preceding our study. Daily mealworm provision over two successive breeding seasons, sufficient to provide 82% of chick energy requirements of House Sparrow pairs nesting within 50 m of feeders, had a large positive impact on the abundance of recently fledged birds (+62%), but only a small positive impact, limited mainly to small colonies, on the overall abundance of territorial males. Colony growth was only weakly related to fledgling abundance in the previous year and did not appear to be constrained by nest‐site availability. Conservation interventions that enhance invertebrate availability for suburban House Sparrows may increase reproductive success but are unlikely, on their own, to lead to population growth or recovery.     

A possible effect of electromagnetic radiation from mobile phone base stations on the number of breeding house sparrows (Passer domesticus)

A possible effect of long-term exposure to low-intensity electromagnetic radiation from mobile phone (GSM) base stations on the number of House Sparrows during the breeding season was studied in six residential districts in Belgium. We sampled 150 point locations within the 6 areas to examine small-scale geographic variation in the number of House Sparrow males and the strength of electromagnetic radiation from base stations. Spatial variation in the number of House Sparrow males was negatively and highly significantly related to the strength of electric fields from both the 900 and 1800 MHz downlink frequency bands and from the sum of these bands (Chi(2)-tests and AIC-criteria, P<0.001). This negative relationship was highly similar within each of the six study areas, despite differences among areas in both the number of birds and radiation levels. Thus, our data show that fewer House Sparrow males were seen at locations with relatively high electric field strength values of GSM base stations and therefore support the notion that long-term exposure to higher levels of radiation negatively affects the abundance or behavior of House Sparrows in the wild.     

Seasonal variation in the metabolism-temperature relation of House Sparrows (Passer domesticus) in KwaZulu-Natal,South Africa

Many birds exhibit considerable phenotypic flexibility in metabolism to maintain thermoregulation or to conserve energy. This flexibility usually includes seasonal variation in metabolic rate. Seasonal changes in physiology and behavior of birds are considered to be a part of their adaptive strategy for survival and reproductive success. House Sparrows (Passer domesticus) are small passerines from Europe that have been successfully introduced to many parts of the world, and thus may be expected to exhibit high phenotypic flexibility in metabolic rate. Mass specific Resting Metabolic Rate (RMR) and Basal Metabolic Rate (BMR) were significantly higher in winter compared with summer, although there was no significant difference between body mass in summer and winter. A similar, narrow thermal neutral zone (25–28 °C) was observed in both seasons. Winter elevation of metabolic rate in House Sparrows was presumably related to metabolic or morphological adjustments to meet the extra energy demands of cold winters. Overall, House Sparrows showed seasonal metabolic acclimatization similar to other temperate wintering passerines. The improved cold tolerance was associated with a significant increase in VO₂ in winter relative to summer. In addition, some summer birds died at 5 °C, whereas winter birds did not, further showing seasonal variation in cold tolerance. The increase in BMR of 120% in winter, compared to summer, is by far the highest recorded seasonal change so far in birds.     

Factors affecting the abundance of House Sparrows Passer domesticus in urban areas of southeast of Spain

Capsule: House Sparrows Passer domesticus in the Valencian Community, where the species is declining, were more abundant in parks and urban areas where rubbish bins are available as a source of food. In heavy traffic areas, crowded streets and high-rise building zones, the species was less abundant.

Aims: To explore biotic and abiotic factors affecting the abundance of urban House Sparrows. To infer the causes that might explain the urban decline and to propose measures that might halt it and elevate population numbers.

Methods: The abundance of urban House Sparrows was analysed in relation to 17 landscape variables by carrying out 181 point counts (50 urban parks/38 schools/93 streets) per season across six locations and over five seasons (breeding and non-breeding seasons) in southeast Spain. Urban parks were also described by 21 additional variables. Hierarchical partitioning analyses were used to identify favoured or avoided urban factors by birds in each season.

Results: House Sparrows were most abundant in parks and other urban areas where rubbish bins were available as their foraging sites. The presence of rubbish bins, area and proximity to other parks favoured their abundance in parks. Furthermore, House Sparrows were less abundant in crowded streets, heavy traffic areas and high-rise buildings zones.

Conclusion: House Sparrows were present in high abundance where they feed but were scarce in polluted, crowded and heavily built-up areas of the city. Changes in the structure of these urban habitats may underlie the documented declines across Spain. Green urban planning and management are needed to ensure heterogeneous green areas with enough vegetation coverage to provide high availability of natural food versus anthropogenic food scraps. Sufficient numbers of buildings offering nest sites and reduced air pollution might ameliorate cities adequately to support larger populations of House Sparrows.     

A Novel Candidate Region for Genetic Adaptation to High Altitude in Andean Populations

Humans living at high altitude (≥2,500 meters above sea level) have acquired unique abilities to survive the associated extreme environmental conditions, including hypoxia, cold temperature, limited food availability and high levels of free radicals and oxidants. Long-term inhabitants of the most elevated regions of the world have undergone extensive physiological and/or genetic changes, particularly in the regulation of respiration and circulation, when compared to lowland populations. Genome scans have identified candidate genes involved in altitude adaption in the Tibetan Plateau and the Ethiopian highlands, in contrast to populations from the Andes, which have not been as intensively investigated. In the present study, we focused on three indigenous populations from Bolivia: two groups of Andean natives, Aymara and Quechua, and the low-altitude control group of Guarani from the Gran Chaco lowlands. Using pooled samples, we identified a number of SNPs exhibiting large allele frequency differences over 900,000 genotyped SNPs. A region in chromosome 10 (within the cytogenetic bands q22.3 and q23.1) was significantly differentiated between highland and lowland groups. We resequenced ~1.5 Mb surrounding the candidate region and identified strong signals of positive selection in the highland populations. A composite of multiple signals like test localized the signal to FAM213A and a related enhancer; the product of this gene acts as an antioxidant to lower oxidative stress and may help to maintain bone mass. The results suggest that positive selection on the enhancer might increase the expression of this antioxidant, and thereby prevent oxidative damage. In addition, the most significant signal in a relative extended haplotype homozygosity analysis was localized to the SFTPD gene, which encodes a surfactant pulmonary-associated protein involved in normal respiration and innate host defense. Our study thus identifies two novel candidate genes and associated pathways that may be involved in high-altitude adaptation in Andean populations.