Evidence of two polygalacturonases produced by a mycorrhizal ericoid fungus during its saprophytic growth

Abstract The NH₂-terminal amino sequence through the first 20 amino acids was obtained for transferrin-binding protein (TBP)1 from three strains of Neisseria meningitidis . These were identical except for a glutamine to a glycine substitution at residue 6 in one case. The sequences of the NH₂-terminal 20 amino acids of TBP2 from the same three strains were also determined; one TBP2 had a M _r of 68 000 and the other two of 78 000. Sequences were identical up to residue 13 in all three proteins. Peptides based on the NH₂-terminal sequences of TBP1 and 2 were synthesized, linked to Keyhole Limpet haemocyanin and used to raise antibodies in rabbits. Anti-peptide antibodies cross-reacted on immunoblotting with the respective TBPs from all meningococcal strains tested, as well as with those from N. gonorrhoeae suggesting that the NH₂-terminals of these proteins are well conserved in the Neisseria . Neither anti-peptide serum reacted with the analogous TBP1 and 2 from Haemophilus influenzae , although common epitopes have previously been shown to exist.     

Synergistic growth in bacteria depends on substrate complexity

Both positive and negative interactions among bacteria take place in the environment. We hypothesize that the complexity of the substrate affects the way bacteria interact with greater cooperation in the presence of recalcitrant substrate. We isolated lignocellulolytic bacteria from salt marsh detritus and compared the growth, metabolic activity and enzyme production of pure cultures to those of three-species mixed cultures in lignocellulose and glucose media. Synergistic growth was common in lignocellulose medium containing carboxyl methyl cellulose, xylan and lignin but absent in glucose medium. Bacterial synergism promoted metabolic activity in synergistic mixed cultures but not the maximal growth rate (μ). Bacterial synergism also promoted the production of β-1,4-glucosidase but not the production of cellobiohydrolase or β-1,4-xylosidase. Our results suggest that the chemical complexity of the substrate affects the way bacteria interact. While a complex substrate such as lignocellulose promotes positive interactions and synergistic growth, a labile substrate such as glucose promotes negative interactions and competition. Synergistic interactions among indigenous bacteria are suggested to be important in promoting lignocellulose degradation in the environment.     

Physiological function of hydrogen metabolism during growth of sulfidogenic bacteria on organic substrates.

Desulfovibrio vulgaris Madison and Thermodesulfobacterium commune contained functionally distinct hydrogenase activities, one which exchanged 3H2 into 3H2O and was inhibited by carbon monoxide and a second activity which produced H2 in the presence of CO. Cell suspensions of D. vulgaris used either lactate, pyruvate, or CO as the electron donor for H2 production in the absence of sulfate. Both sulfidogenic species produced and consumed hydrogen as a trace gas during growth on lactate or pyruvate as electron donors and on thiosulfate or sulfate as electron acceptors. Higher initial levels of hydrogen were detected during growth on lactate-sulfate than on pyruvate-sulfate. D. vulgaris but not T. commune also produced and then consumed CO during growth on organic electron donors and sulfate or thiosulfate. High partial pressures of exogenous H2 inhibited growth and substrate consumption when D. vulgaris was cultured on pyruvate alone but not when it was metabolizing pyruvate plus sulfate or lactate plus sulfate. The data are discussed in relation to supporting two different models for the physiological function of H2 metabolism during growth of sulfidogenic bacteria on organic electron donors plus sulfate. A trace H2 transformation model is proposed for control of redox processes during growth on either pyruvate or lactate plus sulfate, and an obligate H2 cycling model is proposed for chemiosmotic energy coupling during growth on CO plus sulfate.     

Effect of growth substrate on thermal death of thermophilic bacteria

The heat sensitivity of gram-negative, hydrocarbon-utilizing thermophilic bacteria was altered by a change in growth substrate. Thermophilic strains CC-6, BI-1, and LEH-1, grown with acetate or n-heptadecane as the carbon source, had a higher survival rate when incubated 5 degrees C above their maximum growth temperature than cells of the same organism after growth on glucose or glycerol. There was a correlation between the growth substrated, heat resistance, and the ratios of cellular n-hexadecanoic acid/branched hexadecanoic acid and n-heptadecanoic acid/branched heptadecanoic acid. The bacterial cells that were more heat resistant had ratios of straight-chain/branched-chain fatty acids above 1.0, whereas the heat-sensitive cells had ratios below 0.6.     

The influence of substrate organic content on the growth of a stream chironomid

Stream detritus and Tipula (Diptera) feces were wet-sieved to a 63–250 µm particle size range and mixed in three proportions with ashed sand of the same size to yield food substrates of varying quality. Growth of fourth-instar Stictochironomus annulicrus (Townes) (Diptera: Chironomidae) larvae was used to indicate whether the more nutritious particles were selected from these mixtures. Respective mean relative growth rates on the substrates, in order of decreasing percentage organic matter (i.e. food quality), were: 0.0229, 0.0104 and 0.0004 mg·mg^–1d^–1. Replicates of the relatively high quality substrate consistently elicited the highest growth rates; animals grew at intermediate rates on medium quality, and slowest on low quality substrates. Thus, this collector does not appear to have selected for food quality under the described experimental conditions.     

Effect of growth substrate on thermal death of thermophilic bacteria.

The heat sensitivity of gram-negative, hydrocarbon-utilizing thermophilic bacteria was altered by a change in growth substrate. Thermophilic strains CC-6, BI-1, and LEH-1, grown with acetate or n-heptadecane as the carbon source, had a higher survival rate when incubated 5 degrees C above their maximum growth temperature than cells of the same organism after growth on glucose or glycerol. There was a correlation between the growth substrated, heat resistance, and the ratios of cellular n-hexadecanoic acid/branched hexadecanoic acid and n-heptadecanoic acid/branched heptadecanoic acid. The bacterial cells that were more heat resistant had ratios of straight-chain/branched-chain fatty acids above 1.0, whereas the heat-sensitive cells had ratios below 0.6.     

The growth of saprophytic fungi on root surfaces

Summary Data are provided on the growth of non-pathogenic soil fungi on root surfaces. By growing roots from non-sterile soil into sterile vermiculite, and by regular isolation of fungi from the roots which had grown into the sterile vermiculite, it was shown that fungal growth down roots is slow. It is suggested that in the colonization of roots by non-pathogenic fungi successive lateral colonization from the soil is of greater importance than the growth of fungi down roots.     

Influence of produced acetic acid on growth of sulfate reducing bacteria

Summary A culture of SRB growing in lactate was incubated at different pH values in the range of 5.8 to 7.0. Highest growth rates were observed at pH 6.6. Under gás (H₂S) stripping conditions the specific growth rate decreased with the undissociated acetic acid produced. An inhibition of SRB growth of 50% was observed for undissociated acetic acid concentrations of approximately 54 mg/L.     

Effect of organic matter on growth and cell yield of ammonia-oxidizing bacteria

The effect of various organic compounds on the growth of ammonia-oxidizing bacteria was examined.Nitrosococcus oceanus, a strongly halophilic bacterium, had a very low tolerance to organic matter compared with other organisms tested. Organic compounds scarcely affected the growth of theNitrosomonas strains whereas nitrite formation by bothNitrosococcus mobilis strains was inhibited by nearly all of the substances tested. The growth ofNitrosospira strain Nsp₁ was enhanced more than 30% by acetate and formate, but not growth was detectable in the presence of pyruvate. On the contrary,Nitrosospira strain Nsp₅ was stimulated only by pyruvate. Nitrite formation by the twoNitrosovibrio tenuis strains tested was similar. The growth of both strains was enhanced considerably by formate and glucose; acetate and, to a greater extent, pyruvate inhibited these bacteria.In batch culture, the energy efficiency of autotrophically grown ammonia-oxidizing bacteria varied from strain to strain. The cell yield of mixotrophically grown cultures, per unit of ammonia oxidized, was increased in comparison with autotrophic ones. No heterotrophic growth was detected.     

Biodegradability studies of polyhydroxyalkanoate (PHA) film produced by a marine bacteria using Jatropha biodiesel byproduct as a substrate

Polyhydroxyalkanoates are water-insoluble, hydrophobic polymers and can be degraded by microorganisms that produce extracellular PHA depolymerase. The present work was aimed to evaluate the degradability of Polyhydroxyalkanoate film produced by Halomonas hydrothermalis using Jatropha biodiesel byproduct as a substrate. PHB films were subjected to degradation in soil and compared with the synthetic polymer (acrylate) and blend prepared using the synthetic polymer (acrylate) and PHB. After 50 days, 60% of weight loss in PHB film and after 180 days 10% of blended film was degraded while no degradation was found in the synthetic film. Scanning electron microscopy and confocal microscopy revealed that after 50 days the PHB film and the blended film became more porous after degradation while synthetic film was not porous. The degradative process was biologically mediated which was evident by the control in which the PHB films were kept in sterile soil and the films showed inherent integrity over time. The TGA and DSC analysis shows that the melting temperatures were changed after degradation indicating physical changes in the polymer during degradation.     

First report of a lyase for cepacian, the polysaccharide produced by Burkholderia cepacia complex bacteria

Bacteria belonging to the Burkholderia cepacia complex (Bcc) are interesting for their involvement in pulmonary infections in patients affected by cystic fibrosis (CF) or chronic granulomatous disease. Many Bcc strains isolated from CF patients produce high amounts of exopolysaccharides (EPS). Although different strains sometimes biosynthesise different EPS, the majority of Bcc bacteria produce only one type of polysaccharide, which is called cepacian. The polymer has a unique heptasaccharidic repeating unit, containing three side chains, and up to three O-acetyl substituents.. We here report for the first time the isolation and characterisation of a lyase active towards cepacian produced by a Bacillus sp., which was isolated in our laboratory. The enzyme molecular mass, evaluated by size-exclusion chromatography, is 32,700+/-1500Da. The enzyme catalyses a beta-elimination reaction of the disaccharide side chain beta-d-Galp-(1-->2)-alpha-d-Rhap-(1--> from the C-4 of the glucuronic acid residue present in the polymer backbone. Although active on both native and de-acetylated cepacian, the enzyme showed higher activity on the latter polymer.     

Variations in the energy metabolism of biotechnologically relevant heterofermentative lactic acid bacteria during growth on sugars and organic acids

Heterofermentative lactic acid bacteria (LAB) such as Leuconostoc, Oenococcus, and Lactobacillus strains ferment pentoses by the phosphoketolase pathway. The extra NAD(P)H, which is produced during growth on hexoses, is transferred to acetyl-CoA, yielding ethanol. Ethanol fermentation represents the limiting step in hexose fermentation, therefore, part of the extra NAD(P)H is used to produce erythritol and glycerol. Fructose, pyruvate, citrate, and O₂ can be used in addition as external electron acceptors for NAD(P)H reoxidation. Use of the external acceptors increases the growth rate of the bacteria. The bacteria are also able to ferment organic acids like malate, pyruvate, and citrate. Malolactic fermentation generates a proton potential by substrate transport. Pyruvate fermentation sustains growth by pyruvate disproportionation involving pyruvate dehydrogenase. Citrate is fermented in the presence of an additional electron donor to acetate and lactate. Thus, heterofermentative LAB are able to use a variety of unusual fermentation reactions in addition to classical heterofermentation. Most of the reactions are significant for food biotechnology/microbiology.     

Antagonism between bacteria and fungi: substrate competition and a possible tradeoff between fungal growth and tolerance towards bacteria

Bacteria and fungi often share a common substrate, and their spatial proximity in many environments has lead to either synergistic or antagonistic interactions. In this paper, the interaction of bacterial and fungal decomposers from an aquatic environment was studied. We found indications of a tradeoff between fungal growth and tolerance towards bacteria. Fungal strains growing best in absence of bacteria were most severely affected by bacterial presence, while those less suppressed during co-existence with bacteria had lower maximal growth rates in bacterial absence. Additionally, we show that the antagonism between bacteria and fungi is connected to competition for substrate, but that this competition can be drastically altered if fungi are given an opportunity to establish before inoculation of bacteria. Established fungi out-competed bacteria, and gained higher biomass than in simultaneously inoculated treatments with higher substrate concentrations.     

Dissolved organic carbon released by zooplankton grazing activity-a high-quality substrate pool for bacteria

Experiments were designed to investigate whether processes relatedto zooplankton feeding have a positive effect on bacterial growth.Bacterial abundance and [³H]thymidine incorporation rates werefollowed in grazer-free batch cultures originally containingeither Scenedesmus quadricauda or Rhodomonas lacustris as foodsources, and Daphnia cucullata or Eudiaptomus graciloides asgrazers. Compared with controls lacking either animals or algae,a significantly higher bacterial abundance and productivityoccurred in cultures which contained both phyto- and zoo-plankton.The same experimental methodology was tested during the declineof a diatom spring bloom in a eutrophic, temperate lake. A significantincrease in bacterial biomass was observed due to the grazingactivity of in situ mesozooplankters during the clear-waterphase. Our results demonstrated that the dissolved carbon pathwayfrom mesozooplankton to bacteria averaged 57% (26–78%)of the algal carbon filtered from suspension.     

Influence of volatile metabolites of saprophytic soil microflora on the propagation of pathogenic bacteria

The influence of volatile metabolites of saprophytic soil microflora on the propagation of Listeria monocytogenes and Yersinia pseudotuberculosis is shown. Different character of interspecific relationships between bacteria, influencing their propagation, can be observed on the metabolic level. Volatile compounds produced by microorganisms are capable to act as both intra- and interspecific regulators of microbial communities. In this connection the propagation of pathogenic bacteria inhabiting soil may be stimulated or inhibited by the metabolic products of soil microorganisms. Methanol released by saprophytic bacteria into the environment play an important role in this process.