Requirements for reliable determination of binding affinity constants by kinetic approach

The nonspecific binding (equilibrium coefficient kn) of ligand (L) and/or the incomplete recovery (alpha < 1) of the receptor-ligand (RL) complex in binding measurements, could hamper accurate determination of the association and dissociation rate constants of the R/L system. For the simplest model of R/L interaction, characterized by a bimolecular association process (rate constant k1) and a monomolecular dissociation process (rate constant k2), the consequences of kn and/or alpha neglect on k1 and k2 determination were investigated. Various situations that are especially relevant for k1 determination, were examined in which nonspecific binding was: (i) negligible relative to specific binding, or (ii) developed progressively or very rapidly in association kinetics. When only the initial kinetic phase was used, according to the situation (i.e. the nonspecific binding characteristics, and the fact that kn and/or alpha were or were not taken into account to correct the binding measurements), k1 could be accurately determined or generally slightly overestimated or slightly underestimated (in the two latter cases by factors involving mainly kn and/or alpha but not the R concentration or the R/L equilibrium association constant, K), whereas k2 should always be fairly well estimated. Consequently, for the simplest R/L systems, the k1/k2 ratio derived from such kinetic experiments should be much less susceptible to substantial underestimation than K derived from R saturation experiments [Borgna, J. Steroid Biochem. Mol. Biol. (2004)]. Kinetic experiments could also be more appropriate than R saturation experiments to detect cooperative--positive or negative--binding of L to R.     

Substitution of Torpedo acetylcholine receptor alpha 1-subunit residues with snake alpha 1- and rat nerve alpha 3-subunit residues in recombinant fusion proteins: effect on alpha-bungarotoxin binding.

A fusion protein consisting of the TrpE protein and residues 166-211 of the Torpedo acetylcholine receptor alpha 1 subunit was produced in Escherichia coli using a pATH10 expression vector. Residues in the Torpedo sequence were changed by means of oligonucleotide-directed mutagenesis to residues present in snake alpha 1 subunit and rat nerve alpha 3 subunit which do not bind alpha-bungarotoxin. The fusion protein of the Torpedo sequence bound 125I-alpha-bungarotoxin with high affinity (IC50 = 2.5 x 10(-8) M from competition with unlabeled toxin, KD = 2.3 x 10(-8) M from equilibrium saturation binding data). Mutation of three Torpedo residues to snake residues, W184F, K185W, and W187S, had no effect on binding. Conversion of two additional Torpedo residues to snake, T191S and P194L, reduced alpha-bungarotoxin binding to undetectable levels. The P194L mutation alone abolished toxin binding. Mutation of three Torpedo alpha 1 residues to neuronal alpha 3-subunit residues, W187E, Y189K, and T191N, also abolished detectable alpha-bungarotoxin binding. Conversion of Try-189 to Asn which is present in the snake sequence (Y189N) abolished toxin binding. It is concluded that in the sequence of the alpha subunit of Torpedo encompassing Cys-192 and Cys-193, Try-189 and Pro-194 are important determinants of alpha-bungarotoxin binding. Tyr-189 may interact directly with cationic groups or participate in aromatic-aromatic interactions while Pro-194 may be necessary to maintain a conformation conductive to neurotoxin binding.     

Chiral recognition based on enantioselective interactions of propranolol enantiomers with cyclosophoraoses isolated from Rhizobium meliloti

Cyclosophoraoses isolated from Rhizobium meliloti, as an NMR chiral shift agent, were used to discriminate propranolol enantiomers. Continuous variation plot made from the complex of cyclosophoraoses with propranolol showed that the diastereomeric complex had predominantly 1:1 stoichiometry through UV spectroscopic analysis. The chiral recognition of propranolol enantiomers by cyclosophoraoses was investigated through the determination of binding constant based on the (13)C NMR chemical shift changes. The averaged K(obs) values from the plots were 55.7 M(-1) for (R)-(+)-propranolol and 36.6 M(-1) for (S)-(-)-propranolol, respectively. Enantioselectivity (alpha = K(R+)/K(S(-)) of 1.52 was then obtained. Computational calculation also revealed that (R)-(+) propranolol was more tightly bound with cyclosophoraose than (S)-(-)-propranolol due to the enhanced van der Waals interaction.     

Vaccine-escape and fast-growing mutations in the United Kingdom,the United States,Singapore, Spain,India, and other COVID-19-devastated countries

Recently, the SARS-CoV-2 variants from the United Kingdom (UK), South Africa, and Brazil have received much attention for their increased infectivity, potentially high virulence, and possible threats to existing vaccines and antibody therapies. The question remains if there are other more infectious variants transmitted around the world. We carry out a large-scale study of 506,768 SARS-CoV-2 genome isolates from patients to identify many other rapidly growing mutations on the spike (S) protein receptor-binding domain (RBD). We reveal that essentially all 100 most observed mutations strengthen the binding between the RBD and the host angiotensin-converting enzyme 2 (ACE2), indicating the virus evolves toward more infectious variants. In particular, we discover new fast-growing RBD mutations N439K, S477N, S477R, and N501T that also enhance the RBD and ACE2 binding. We further unveil that mutation N501Y involved in United Kingdom (UK), South Africa, and Brazil variants may moderately weaken the binding between the RBD and many known antibodies, while mutations E484K and K417N found in South Africa and Brazilian variants, L452R and E484Q found in India variants, can potentially disrupt the binding between the RBD and many known antibodies. Among these RBD mutations, L452R is also now known as part of the California variant B.1.427. Finally, we hypothesize that RBD mutations that can simultaneously make SARS-CoV-2 more infectious and disrupt the existing antibodies, called vaccine escape mutations, will pose an imminent threat to the current crop of vaccines. A list of most likely vaccine escape mutations is given, including S494P, Q493L, K417N, F490S, F486L, R403K, E484K, L452R, K417T, F490L, E484Q, and A475S. Mutation T478K appears to make the Mexico variant B.1.1.222 the most infectious one. Our comprehensive genetic analysis and protein-protein binding study show that the genetic evolution of SARS-CoV-2 on the RBD, which may be regulated by host gene editing, viral proofreading, random genetic drift, and natural selection, gives rise to more infectious variants that will potentially compromise existing vaccines and antibody therapies.     

Solution NMR structure of S100B bound to the high-affinity target peptide TRTK-12

The solution NMR structure is reported for Ca(2+)-loaded S100B bound to a 12-residue peptide, TRTK-12, from the actin capping protein CapZ (alpha1 or alpha2 subunit, residues 265-276: TRTKIDWNKILS). This peptide was discovered by Dimlich and co-workers by screening a bacteriophage random peptide display library, and it matches exactly the consensus S100B binding sequence ((K/R)(L/I)XWXXIL). As with other S100B target proteins, a calcium-dependent conformational change in S100B is required for TRTK-12 binding. The TRTK-12 peptide is an amphipathic helix (residues W7 to S12) in the S100B-TRTK complex, and helix 4 of S100B is extended by three or four residues upon peptide binding. However, helical TRTK-12 in the S100B-peptide complex is uniquely oriented when compared to the three-dimensional structures of other S100-peptide complexes. The three-dimensional structure of the S100B-TRTK peptide complex illustrates that residues in the S100B binding consensus sequence (K4, I5, W7, I10, L11) are all involved in the S100B-peptide interface, which can explain its orientation in the S100B binding pocket and its relatively high binding affinity. A comparison of the S100B-TRTK peptide structure to the structures of apo- and Ca(2+)-bound S100B illustrates that the binding site of TRTK-12 is buried in apo-S100B, but is exposed in Ca(2+)-bound S100B as necessary to bind the TRTK-12 peptide.     

Reviews

Principles of General Physiology. Vol. 11: General Physiology. By L. E. B ayliss
Hackfruchtkrankheiten und Nematodenforschung. Editor H. G offart.
Advances in Applied Microbiology. Vol. 1. Editor W. W. U mbreit
Advances in Applied Microbiology. Vol. 11. Editor W. W. U mbreit
Der Vielfrass (Gulo gulo L. 1758). Zur Kenntnis seiner Naturgeschichte und seiner Bedeutung für den Menschen. By P. K rott
Control of Rats in Sewers. By E. W. B entley
Introduction to Probability and Statistics. By H. L. A lder and E. B. R oessler
Methods of Testing Chemicals on Insects. Vol. 11. Edited by H. H. S hepard
The Biology of Marine Animals. By J. A. C olin N icol
The Effects of Pollution on Living Material. Edited by W. B. Y app
Taxonomy of Flowering Plants. By C. L. P orter
Bananas. By N. W. S immonds
Atlas of Bacterial Flagellation. By E inar L eifson
Diagnostik der Bakterien und Actinomyceten. By N. A. K rassilnikov , M oscow , translated into German by R. W. W ittwer and R. D ickscheit
A Review of the Biological Control of Insects and Weeds in Australia and Australian New Guinea. By F rank W ilson
The Ecology of Soil Fungi. Edited by D. P arkinson and J. S. W aid . (An International Symposium)
Introduction to Plant Geography and Some Related Sciences. By N icholas P olunin     

REVIEWS

Plant Communities of the Scottish Highlands. A Study of Scottish Mountain, Moorland and Forest Vegetation . (Monographs of the Nature Conservancy, No. 1.) By D onald McV ean and D erek A. R atcliffe .
* L unde , T. (1962). An investigation into the pH-amplitudes of some mountain plants in the county of Trorns. Acta borealia. A: Scientia , Nr. 20.
Physiology and Biochemistry of Algae . Edited by R alph A. L ewin .
Fungal Genetics . By J. R. S. F incham and P. R. D ay .
The Young Botanist . By C. T. P rime .
Organization in Plants . By W. M. M. B aron .
Chromosome Marker . By K. R. L ewis and B. J ohn .
Symbiotic Associations . Thirteenth Symposium of the Society for General Microbiology. Edited by P. S. N utman and B arbara M osse .
The Developmental Anatomy of Isoetes. By D ominick J. P aolillo , Jr.
Cucurbits: Botany, Cultivation and Utilization . By T homas W. W hitaker and G len N. D avis .
Common Malayan Plants . By H. B. Gilliland.
Sierra Nevada Natural History . By T racey L. S torer and R obert R. U singer .
Croissance et Développement des Plantes . By L ucie K ofler .
Modern Methods of Plant Analysis , vol. VI. Founded by K. P aech and M. V. T racey , continued by H. F. L inskens and M. V. T racey in co-operation with B. D. S anwal .
Enzyme Chemistry of Phenolic Compounds . Edited by J. B. P ridham .     

Determination of equilibrium constants for a sequential model of dioxygen binding by hemoglobin-inositol hexaphosphate complexes: the structural pathway from deoxy- to oxy-hemoglobin

The affinity of human hemoglobin (Hb4) for dioxygen was determined in 0.050 M bistris, 0.005 M inositol hexaphosphate (IHP) at pH 7.0 and 20.0 degrees C. Binding of dioxygen by Hb4 was determined by detailed spectroscopic analysis of the absorption spectrum in the region from 460 to 620 nm. The absorption spectrum of samples at intermediate values of fractional saturation (F) could not be resolved into components of Hb4 and (HbO2)4 without generating a residual spectrum, the amplitude of which was greatest at F from 0.4 to 0.5 and least at values of F of 0 and 1. An equation of state for dioxygen binding by the Hb4-IHP complex was formulated and tested by its ability to predict (i) the equilibrium binding curve and (ii) the variation in amplitude of the residual spectrum with F. The equilibrium binding data was fitted to the following equation of state: (Formula: see text) where K1 is the equilibrium constant for binding of dioxygen to an alpha chain of the Hb4-IHP complex, K2 is the constant for the second alpha chain, K3 is the equilibrium constant for the large-scale conformational change, K4 is the equilibrium constant for binding of oxygen by both beta chains, and (L) is the ligand concentration. The best-fitting values were as follows: K1, 0.03497 mm Hg-1; K2, 0.01368 mm Hg-1; K3, 2.44; K4, 0.0008867 mm Hg-2. The residual spectra were attributed to differential loading of dioxygen by the alpha and beta chains. Equations of state for F of each chain are presented, and the amplitude of the residual spectra was shown to be accurately predicted by the differences in F of each chain when subjected to the constraint that the best-fitting values of K1-K4 be used in predicting saturation of each chain with dioxygen.     

Reviews

Advances in Botanical Research . Vol. 14. Ed. by J. A. C allow .
Inorganic Nitrogen Metabolism . Ed. by W. R. U llrich , P. J. A paricio , P. J. S yrett and F. C astillo .
A Centry od Nitrogen Fixation Research . Ed. by F. J. B ergersen and J. R. P ostgate .
Horizons in Lichenology . Ed. by D. H. D alby , D. L. H awksworth and S. L. J ury .
Introduction to Ecological Biochemistry , By J. B. H arborne .
Russell's Soil Conditions and Plant Growth, Ed. by A lan W ild .
Disease and Plant Population Biology . By J. J. B urdon.
Molecular Determinants of Plant Diseases . Ed. by S. N ishimura , C. P. V ance and N. D oke.
British Fungus Flora, Agrics and Boleti 5. Strophariaceae & Coprinaceae P.P.: Hypholoma, Melanotus, Psilocybe, Stropharia, Lacrymaria & Panaeolus, Psilocybe, Stropharia, Lacrymaria & Panaeolus, By R W atling and M. N. G regory .
Mechanisms of Woody Plant Defenses Against Insects . Ed. by W. J. M attson , J. L evieux and C. B ernard -D agan .
Air Pollution and Acid Rain. The Biological Impact . By A. W ellburn .
The Australian Paniceae (Paniceae) . By R. D. W erster .
Kew Index for 1986 . Compiled by R.A. D avies and K.M. L loyd .
Kew Index for 1987 . Compiled by R. A. D avies and K. M. L loyd .
Index Kewensis Supplement XVII . Compiled by J. L. M. P inner , T. A. B ence , R. A. D avies and K. M. L loyd .
Index Kewensis Supplement XVIII . Compiled by J. L. M. P inner , T. A. B ence , R. A. D avies and K. M. L loyd . Edited by R. A. D avies .
The Botany of Mangroves . By P. B. T omlinson .
Floweroing Plants in West Africa . By M argaret S teentoft .
Plants in Danger . By S. D. D avies     

Book Reviews

Zoophysiology. Coordinating Editor: F arner , D. S. Editors: H einrich , B.; H oar , W. S.; J ohansen , K.; L anger , H.; N euweiler , G.; R andall , D. J. Vol. 17: S mith , R. J. F.: The Control of Fish Migration. .
Systematische Zoologie. Begründet von A dolf R emane , V olker S torch und U lrich W elsch . Fortgeführt von Prof. Dr. V olker S torch , Zoologisches Institut der Universität Heidelberg, und Prof. Dr. Dr. U lrich W elsch , Anatomische Anstalt der Universität München.     

The low affinity 40,000 Fc gamma receptor and the transferrin receptor can be alternative or simultaneous target structures on cells sensitive for natural killing

The role of the low avidity 40,000 dalton receptor for IgG (Fc gamma R) present on K562 and U937 cells in sensitivity to natural killing (NK) was studied by using a murine monoclonal antibody (mAb) specific for the 40,000 dalton Fc gamma R (alpha Fc gamma R mAb). Pretreatment of K562 target cells with intact alpha Fc gamma R mAb or its Fab fragment or anti-transferrin receptor (alpha TFR) mAb partially blocked in a dose-dependent manner, NK activity to K562 cells. However, combined pretreatment with alpha Fc gamma R and alpha TFR mAb completely blocked NK activity against K562 targets. As compared with K562 cells, lower levels of NK were elicited against Molt-4, U937, HL-60, and Daudi targets. Although NK activity to Molt-4 targets was not affected by alpha Fc gamma R mAb, it was fully prevented by pretreatment with alpha TFR mAb. In contrast, NK to U937 cells was not influenced by alpha TFR mAb, but it was strongly inhibited by alpha Fc gamma R mAb. The resistance of 3H-TdR-prelabeled adherent HEp-2 cells to natural cell-mediated cytotoxicity was not affected by either mAb. Lectin-dependent cell-mediated cytotoxicity (LDCC) against HEp-2 cells due to the presence of concanavalin A, and was completely abrogated by pretreatment of the targets with alpha TFR mAb, but was unaffected by alpha Fc gamma R mAb. By use of the flow cytometer, a significant correlation was detected between the relative expression of 40,000 dalton Fc gamma R and the susceptibility to NK, whereas the expression of TFR was discordant from NK sensitivity. As determined in the single cell cytotoxicity assay alpha Fc gamma R mAb reduced the frequency of target binding effector cells without affecting the number of dead bound targets. This pattern of inhibition was found against both K562 and U937 targets. Alternatively, alpha TFR mAb inhibited both binding and killing of K562 and Molt-4 targets. Because pretreatment of HEp-2 cells with alpha TFR mAb did not influence conjugate formation, the blocking of LDCC to HEp-2 cells by alpha TFR mAb can be related to post-binding events. These data show that although both the 40,000 dalton Fc gamma R and the TFR can be target structures for NK cell recognition, the TFR may also play an important role in the post-binding events.     

New insights into the role of the N terminus in conformational transitions of the Na,K-ATPase

The deletion of 32 residues from the N terminus of the alpha1 catalytic subunit of the rat Na,K-ATPase (mutant alpha1M32) shifts the E(1)/E(2) conformational equilibrium toward E(1), and the combination of this deletion with mutation E233K in the M2-M3 loop acts synergistically to shift the conformation further toward E(1) (Boxenbaum, N., Daly, S. E., Javaid, Z. Z., Lane, L. K., and Blostein, R. (1998) J. Biol. Chem. 273, 23086-23092). To delimit the region of the cytoplasmic N terminus involved in these interactions, the consequences of a series of N-terminal deletions of alpha1 beyond Delta32 were evaluated. Criteria to assess shifts in conformational equilibrium were based on effects of perturbation of the entire catalytic cycle ((i) sensitivity to vanadate inhibition, (ii) K(+) sensitivity of Na-ATPase measured at micromolar ATP, (iii) changes in K'(ATP), and (iv) catalytic turnover), as well as estimates of the rates of the conformational transitions of phospho- and dephosphoenzyme (E(1)P --> E(2)P and E(2)(K(+)) --> E(1) + K(+)). The results show that, compared with alpha1M32, the deletion of up to 40 residues (alpha1M40) further shifts the poise toward E(1). Remarkably, further deletions (mutants alpha1M46, alpha1M49, and alpha1M56) reverse the effect, such that these mutants increasingly resemble the wild type alpha1. These results suggest novel intramolecular interactions involving domains within the N terminus that impact the manner in which the N terminus/M2-M3 loop regulatory domain interacts with the M4-M5 catalytic loop to effect E(1) <--> E(2) transitions.     

Blocking of the initiation of protein biosynthesis by a pentanucleotide complementary to the 3' end of Escherichia coli 16 S rRNA.

Hydrogen bonding between the 3' terminus of 16 S rRNA (... C-A-C-C-U-C-C-U-U-A-OH3) and complementary sequences within the initiator region of mRNA may be a crucial event in the specific initiation of protein biosynthesis (Shine, J., and Dalgarno, L. (1974) Proc. Natl. Acad. Sci. U. S. A. 71, 1342-1346; Steitz, J. A., and Jakes, K. (1975) Proc. Natl. Acad. Sci. U. S. A. 72, 4734-4738). Using equilibrium dialysis, we have studied the binding of G-A-dG-dG-U (which is complementary to the 3' end of 16 S rRNA and which has been synthesized enzymatically) to initiation factor-free Escherichia coli ribosomes. We have also investigated the effects of the pentanucleotide on initiation reactions in E. coli ribosomes. G-A-dG-dG-U has a specific binding site on the 30 S ribosome with an association constant of 2 x 10(6) M-1 at 0 degrees C. G-A-dG-dG-U inhibits the R17 mRNA-dependent binding of fMet-tRNA by about 70%, both with 70 S ribosomes and 30 S subunits. In contrast, the A-U-G-dependent initiation reaction and the poly(U)-dependent Phe-tRNA binding was not affected by the pentanucleotide with both ribosomal species.     

Hydrogen-1 NMR evidence for three interconverting forms of staphylococcal nuclease: effects of mutations and solution conditions on their distribution

It has been known for several years that 1H NMR spectra of the enzyme staphylococcal nuclease contain resonances due to conformational heterogeneity [Markley, J. L., Williams, M. N., & Jardetzky, O. (1970) Proc. Natl. Acad. Sci. U.S.A. 65, 645-651]. One source of conformational heterogeneity has been attributed recently to cis/trans isomeriation of the Lys116-Pro117 peptide bond [Evans, P. A., Dobson, C. M., Kautz, R. A., Hatfull, G., & Fox, R. O. (1987) Nature (London) 329, 266-268]. In this paper we present evidence for three interconverting folded forms of nuclease. Forms N and N' are monomeric; form N" appears at higher nuclease concentrations and probably corresponds to dimerized enzyme. Saturation transfer was used to demonstrate that exchange occurs between the denatured state and N". The effects of temperature, pH, and Ca2+ and nucleotide binding on NMR spectra of nuclease were examined. When the temperature is increased or the pH is lowered, form N' is favored relative to N. Binding of a competitive inhibitor (thymidine 3',5'-bisphosphate plus calcium ion) strongly favors one form of nuclease. 1H NMR spectra of wild-type nuclease, the single-mutant nucleases L89F and H124L, and the double-mutant nuclease F76V+H124L were compared. In the unligated proteins, the equilibrium constant for the conformational equilibrium N in equilibrium with N' is approximately 0.1 in wild-type nuclease and nuclease H124L; by contrast, this equilibrium constant is about 0.7 in nuclease L89F and 1.2 in nuclease F76V+H124L under similar conditions.     

铽(Ⅲ)与人血清脱铁转铁蛋白结合的荧光光谱研究

在ｐＨ７．４０．１ｍｏｌ／ＬＨｅｐｅｓ及室温条件下,使用荧光光谱进行了Ｔｂ３＋对人血清脱铁转铁蛋白的滴定．结果表明Ｔｂ３＋与人血清脱铁转铁蛋白结合后,其５４９ｎｍ处的荧光强度增强约１０５倍．在５４９ｎｍ处Ｔｂ３＋－脱铁转铁蛋白络合物的摩尔荧光强度是（９．６５±０．０５）×１０４ｍｏｌ－１Ｌ,Ｔｂ３＋可占据脱铁转铁蛋白的两个金属离子结合部位,优先占据脱铁转铁蛋白的Ｃ端结合部位,条件平衡常数是ｌｇＫＣ＝９．９６±０．２０,ｌｇＫＮ＝６．３７±０．１６．Ｔｂ３＋与Ｒ３＋Ｅ（ＲＥ＝Ｎｄ、Ｓｍ、Ｅｕ和Ｇｄ）间的线性自由能关系表明稀土离子占据脱铁转铁蛋白的Ｃ端结合部位时受离子大小的影响     

Phe(303) in TMVI of the alpha(1B)-adrenergic receptor is a key residue coupling TM helical movements to G-protein activation.

We showed previously that Phe(303) in transmembrane segment (TM) VI of the alpha(1B)-adrenergic receptor, a highly conserved residue in G-protein-coupled receptors (GPCRs), is critically involved in receptor-activation and G-protein-coupling [Chen, S. H., Lin, F., Xu, M., Hwa, J., and Graham, R. M. (2000) EMBO J. 19, 4265-4271]. Here, we show that saturation mutagenesis of Phe(303) results in a series of mutants with different levels of constitutive activity for inositol phosphate (IP) signaling. Mutants F303G and F303N showed neither basal nor agonist-stimulated IP turnover, whereas F303A displayed increased basal activity but an attenuated maximal response to (-)-epinephrine-stimulation. F303L, on the other hand, showed all features of a typical constitutively active GPCR with markedly increased basal activity and increased potency and efficacy of agonist-stimulated IP signaling. All mutants displayed higher agonist-binding affinities than the wild-type receptor, and by thermal stability studies, those able to signal showed increased susceptibility to inactivation with an order of sensitivity (F303L > F303A > WT) directly related to their degree of constitutive activity. Using the substituted cysteine accessibility method (SCAM) and equilibrium binding studies, we further show that the F303A and F303L mutants result in TM helical movements that differ in accordance with their degree of constitutive activity. These findings, therefore, confirm and extend our previous data implicating Phe(303) as a key residue coupling TM helical movements to G-protein-activation.     

Use of the direct linear plot to estimate binding constants for protein-ligand interactions.

The direct linear plot (Eisenthal and Cornish-Bowden[1974] Biochem. J. $\text{139}$, 715–720) for the determination of enzyme kinetic constants has been assessed as a means of describing specific steroid-protein interactions. In the rat uterine cytoplasmic estrogen receptor system, determination of the equilibrium dissociation constant (K_D) and of the total number of ligand-binding sites (B_max) has been made, and the results are in good agreement with those obtained by Scatchard and Lineweaver-Burk plot analyses. The usefulness of the direct linear plot lies in the speed and simplicity with which it can be constructed and interpreted.     

Book Reviews

Visualizing Statistical Models and Concepts (R. W. Farebrother) C. B. Borkowf Statistical Consulting (J. Cabrera and A. McDougall) A. Cowling Data Monitoring Committees in Clinical Trials: A Practical Perspective (S. S. Ellenberg, T. R. Fleming, and D. L. DeMets) B. Freidlin Combined Survey Sampling Inference: Weighing Basu's Elephants (K. Brewer) Y. G. Berger Visualising Categorical Data (M. Friendly) R. J. Marshall Estimating Animal Abundance: Closed Populations (D. L. Borchers, S. T. Buckland, and W. Zucchini) A. Chao Likelihood, Bayesian, and MCMC Methods in Quantitative Genetics (D. Sorensen and D. Gianola) J. Whittaker Block Designs: A Randomization Approach, Volumes I and II (T. Caliński and S. Kageyama) G. M. Clarke Computational Statistics Handbook with Matlab (W. L. Martinez and A. R. Martinez) P. K. Dunn Spatial Cluster Modelling (A. B. Lawson and D. G. T. Denison, eds.) D. Allard Elements of Computational Statistics (J. E. Gentle) D. M. Smith Brief Reports by the Editor A First Course in Linear Model Theory (N. Ravishanker and D. K. Dey) Statistical Inference, 2nd edition (P. H. Garthwaite, I. T. Jolliffe, and B. Jones) Statistical Analysis of Designed Experiments, 2nd edition (H. Toutenburg) Logistic Regression: A Self‐Learning Text, 2nd edition (D. G. Kleinbaum and M. Klein) American Series in Mathematical and Management Sciences, Volume 47. USA‐II, Forum for Interdisciplinary Mathematics Proceedings on Statistics, Combinatorics, and Related Areas, Volume II of Proceedings of the University of South Alabama (U.S.A.) Conference (Mobile, Alabama, U.S.A., December 1999) (S. N. Mishra, ed.)     

Two amino acids within the alpha4 helix of Galphai1 mediate coupling with 5-hydroxytryptamine1B receptors.

We previously reported that residues 299-318 in Galphai1 participate in the selective interaction between Galphai1 and the 5-hydroxytryptamine1B (5-HT1B) receptor (Bae, H., Anderson, K., Flood, L. A., Skiba, N. P., Hamm, H. E., and Graber, S. G. (1997) J. Biol. Chem. 272, 32071-32077). The present study more precisely defines which residues within this domain are critical for 5-HT1B receptor-mediated G protein activation. A series of Galphai1/Galphat chimeras and point mutations were reconstituted with Gbetagamma and Sf9 cell membranes containing the 5-HT1B receptor. Functional coupling to 5-HT1B receptors was assessed by 1) [35S]GTPgammaS binding and 2) agonist affinity shift assays. Replacement of the alpha4 helix of Galphai1 (residues 299-308) with the corresponding sequence from Galphat produced a chimera (Chi22) that only weakly coupled to the 5-HT1B receptor. In contrast, substitution of residues within the alpha4-beta6 loop region of Galphai1 (residues 309-318) with the corresponding sequence in Galphat either permitted full 5-HT1B receptor coupling to the chimera (Chi24) or only minimally reduced coupling to the chimeric protein (Chi25). Two mutations within the alpha4 helix of Galphai1 (Q304K and E308L) reduced agonist-stimulated [35S]GTPgammaS binding, and the effects of these mutations were additive. The opposite substitutions within Chi22 (K300Q and L304E) restored 5-HT1B receptor coupling, and again the effects of the two mutations were additive. Mutations of other residues within the alpha4 helix of Galphai1 had minimal to no effect on 5-HT1B coupling behavior. These data provide evidence that alpha4 helix residues in Galphai participate in directing specific receptor interactions and suggest that Gln304 and Glu308 of Galphai1 act in concert to mediate the ability of the 5-HT1B receptor to couple specifically to inhibitory G proteins.