Effects of fishing and regional species pool on the functional diversity of fish communities

The potential population and community level impacts of fishing have received considerable attention, but little is known about how fishing influences communities' functional diversity at regional scales. We examined how estimates of functional diversity differed among 25 regions of variable richness and investigated the functional consequences of removing species targeted by commercial fisheries. Our study shows that fishing leads to substantial losses in functional diversity. The magnitude of such loss was, however, reduced in the more speciose regions. Moreover, the removal of commercially targeted species caused a much larger reduction in functional diversity than expected by random species deletions, which was a consequence of the selective nature of fishing for particular species traits. Results suggest that functional redundancy is spatially variable, that richer biotas provide some degree of insurance against the impact of fishing on communities' functional diversity and that fishing predominantly selects for particular species traits. Understanding how fishing impacts community functional diversity is key to predict its effects for biodiversity as well as ecosystem functioning.     

Predicting distributions of species richness and species size in regional floras: Applying the species pool hypothesis to the habitat templet model

The species pool hypothesis is applied here to the interpretation of ‘hump-shaped’ (unimodal) species richness patterns along gradients of both habitat fertility and disturbance level (the habitat templet). A ‘left-wall’ effect analogous to that proposed for the evolution of organismal complexity predicts a right-skewed unimodal distribution of historical habitat commonness on both gradients. According to the species pool hypothesis, therefore, the distribution of opportunity for net species accumulation (speciation minus extinction) should also have a corresponding unimodal central tendency on both habitat gradients. Two assumptions of this hypothesis are illustrated with particular reference to highly fertile, relatively undisturbed habitats: (i) such habitats have been relatively uncommon in space and time, thus providing relatively little historical opportunity for the origination of species with the traits necessary for effective competitive ability under these habitat conditions; and (ii) species that have evolved adaptation to these habitats are relatively large, thus imposing fundamental ‘packing’ limitations on the number of species that can ‘fit’ within such habitats. Based on these assumptions, the species pool hypothesis defines two associated predictions that are both supported by available data: (a) resident species richness will be relatively low in highly fertile, relatively undisturbed contemporary habitats; and (b) species sizes within regional floras should display as a right-skewed unimodal (log-normal) distribution. The latter is supported here by an analysis of data for 2,715 species in the vascular flora of northeastern North America.     

Introducing the biogeographic species pool

The species pool concept has played a central role in the development of ecological theory for at least 60 yr. Surprisingly, there is little consensus as to how one should define the species pool, and consequently, no systematic approach exists. Because the definition of the species pool is essential to infer the processes that shape ecological communities, there is a strong incentive to develop an ecologically realistic definition of the species pool based on repeatable and transparent analytical approaches. Recently, several methodological tools have become available to summarize repeated patterns in the geographic distribution of species, phylogenetic clades and taxonomically broad lineages. Here, we present three analytical approaches that can be used to define what we term ‘the biogeographic species pool’: distance‐based clustering analysis, network modularity analysis, and assemblage dispersion fields. The biogeographic species pool defines the pool of potential community members in a broad sense and represents a first step towards a standardized definition of the species pool for the purpose of comparative ecological, evolutionary and biogeographic studies.     

How to determine a regional species pool: a study in two Swedish regions

The species pool hypothesis has been proposed as one of the possible explanations for the local species richness of plant communities. For testing and validating this theory, it is of crucial importance to determine the dimension of the regional pool, which is the reservoir of species that are potentially able to exist in a community. The main purpose of this study was to develop and test different methods for the determination of the regional species pool. Two regions in Sweden served as study areas, Öland and Uppland. In both regions, three different vegetation types were treated: dry calcareous grasslands, coastal meadows and deciduous forests. For the determination of the regional pool two main groups of methods are proposed: 1) six ecological approaches, based on Ellenberg species indicator values, and 2) two phytosociological approaches, based on the occurrence of species in different syntaxa in the framework of the Braun-Blanquet system. The different screening methods were tested using Sørensen's index expressing the similarity between the community species pool and the regional species pool. Two types of error were recognized which may result in low index values. For the six ecological methods Sørensen's index values were below 50%. The methods differed considerably from each other in accuracy, due to large differences in errors of both types. The phytosociological methods resulted in higher similarity values of up to almost 70%. The two approaches differed in error type but gave similar results.     

Importance of functional traits and regional species pool in predicting long-distance dispersal in savanna ecosystems

Long-distance dispersal (LDD) of plants is difficult to measure but disproportionately important for various ecological and evolutionary processes. Dispersal of seeds of gallery-forest trees in savanna provides an opportunity for the study of colonisation processes and species coexistence driven by LDD. Investigations were carried out on 91 isolated trees along four gallery forests sampled in the Biosphere Reserve of Pendjari, Benin. The abundance of adult trees within nearest gallery forest was combined with functional traits (species maximum height, seed weight, morphological adaptation for dispersal by wind, water, birds and mammals) to explain the floristic composition of forest seedlings and saplings under isolated trees and in savanna. Stepwise negative binomial regression was used to identify the most significant variables explaining abundance of seedlings and saplings beneath isolated trees and in savanna and then derive colonisation from seedlings and persistence from saplings. The maximum height of species and seed weight explained the highest proportion of variance in species colonisation. Morphological dispersal syndromes by wind and birds had poor explanatory importance. Species rare in gallery forest had higher potential to colonise new environments through LDD whilst abundant species had higher persistence abilities. Contrary to the predictions of the seedling-size effect, small-seeded species dominated the sapling stage. The findings revealed the strong dependence of LDD and subsequent colonisation and persistence processes on species traits specialised for a variety of dispersal vectors. They also suggest that LDD towards isolated trees established far away from gallery forest can be difficult.     

Global and regional importance of the tropical peatland carbon pool

Accurate inventory of tropical peatland is important in order to (a) determine the magnitude of the carbon pool; (b) estimate the scale of transfers of peat‐derived greenhouse gases to the atmosphere resulting from land use change; and (c) support carbon emissions reduction policies. We review available information on tropical peatland area and thickness and calculate peat volume and carbon content in order to determine their best estimates and ranges of variation. Our best estimate of tropical peatland area is 441 025 km² (～11% of global peatland area) of which 247 778 km² (56%) is in Southeast Asia. We estimate the volume of tropical peat to be 1758 Gm³ (～18–25% of global peat volume) with 1359 Gm³ in Southeast Asia (77% of all tropical peat). This new assessment reveals a larger tropical peatland carbon pool than previous estimates, with a best estimate of 88.6 Gt (range 81.7–91.9 Gt) equal to 15–19% of the global peat carbon pool. Of this, 68.5 Gt (77%) is in Southeast Asia, equal to 11–14% of global peat carbon. A single country, Indonesia, has the largest share of tropical peat carbon (57.4 Gt, 65%), followed by Malaysia (9.1 Gt, 10%). These data are used to provide revised estimates for Indonesian and Malaysian forest soil carbon pools of 77 and 15 Gt, respectively, and total forest carbon pools (biomass plus soil) of 97 and 19 Gt. Peat carbon contributes 60% to the total forest soil carbon pool in Malaysia and 74% in Indonesia. These results emphasize the prominent global and regional roles played by the tropical peat carbon pool and the importance of including this pool in national and regional assessments of terrestrial carbon stocks and the prediction of peat‐derived greenhouse gas emissions.     

Mutational consequences of dNTP pool imbalances in E. coli

The accuracy of DNA synthesis depends on the accuracy of the polymerase as well as the quality and concentration(s) of the available 5′-deoxynucleoside-triphosphate DNA precursors (dNTPs). The relationships between dNTPs and error rates have been studied in vitro, but only limited insights exist into these correlations during in vivo replication. We have investigated this issue in the bacterium Escherichia coli by analyzing the mutational properties of dcd and ndk strains. These strains, defective in dCTP deaminase and nucleoside diphosphate kinase, respectively, are characterized by both disturbances of dNTP pools and a mutator phenotype. ndk strains have been studied before, but were included in this study, as controversies exist regarding the source of its mutator phenotype. We show that dcd strains suffer from increased intracellular levels of dCTP (4-fold) and reduced levels of dGTP (2-fold), while displaying, as measured using a set of lacZ reversion markers in a mismatch-repair defective (mutL) background, a strong mutator effect for G·C→T·A and A·T→T·A transversions (27- and 42-fold enhancement, respectively). In contrast, ndk strains possess a lowered dATP level (4-fold) and modestly enhanced dCTP level (2-fold), while its mutator effect is specific for just the A·T→T·A transversions. The two strains also display differential mutability for rifampicin-resistant mutants. Overall, our analysis reveals for both strains a satisfactory correlation between dNTP pool alterations and the replication error rates, and also suggests that a minimal explanation for the ndk mutator does not require assumptions beyond the predicted effect of the dNTP pools.     

Parasites and the regional distribution of bumblebee species

Parasites and regional processes may be important to structure local species assemblages In particular, it has been hypothesized that widely distributed and abundant species should harbour more parasite species which could give them a competitive advantage in local species assemblages Empirical evidence bearing on these points are scarce and mainly restricted to vertebrate hosts or plants The aim of this study was to provide data in insect hosts and to test whether the patterns in field populations conform with those correlates expected from the parasite-host distribution hypothesis We investigated species assemblages of bumblebees at 12 different sites in a mesoscale region with their parasites over two consecutive years Parasites included dipteran and hymenopteran parasitoids. nematodes, mites, and protozoa The mean number of parasite species per host species ranged from 1 to 8 To account for sampling effort, all data were corrected for sample size effects The number of parasite species per average host individual (parasite load) ranged from 0 09 to 0 75 In cross-species comparisons, the number of parasite species per host species was positively correlated with regional distribution, i e the number of sites a host species occupied m the region, and with the average local host abundance The same relationships were found for parasite load In addition, parasite load correlated positively with average colony size of the host species, but not with body size of the individuals Bumblebee species were bimodally distributed When separated into widely-distributed and locally-occurring species, common hosts harboured more parasite species than rare ones Moreover, workers of common species individually had higher parasite loads From these results, we conclude that some of the necessary preconditions for parasites being able to affect the distribution and occurrence of their hosts are met in bumblebees The findings support a general pattern that parasite loads correlate positively with local abundance and geographical distribution of their hosts, also on mesoscales usually considered in ecological studies     

Ecosystem damage assessment of land transformation using species loss

Purpose

The objectives of this study are to develop life cycle impact assessment (LCIA) methods that enable an assessment of the impact on the biodiversity by land use categorized in general land use types and to obtain the implications for an assessment of global land use impact, using the methods in the Life Cycle Impact Assessment Method based on Endpoint Modeling (LIME).

Methods

Expected Increase in Number of Extinct Species (EINES), which was calculated by summing the increments in extinction risks of each threatened vascular plant species due to land transformation, was used as an indicator of damage to biodiversity. EINES per land use category was calculated using data from the “Threatened Wildlife of Japan, Red Data Book 2nd ed. Volume 8, Vascular Plants” (hereinafter referred to as “RDB”).

Results and discussion

The EINES of wetlands and grassland was relatively high. The number of species that were assumed to exist in forestland was large; however, the EINES of forestland was relatively low. It was considered to be influenced by the huge area of forestland in Japan. EINES of other land was also relatively high, and it was considered to be the reflection of the existence of species whose habitat is peculiar, such as limestone areas or high mountains.

Conclusions

Damage factors developed for Japan in this study have broad potential application, as they have more general land use categories than those in LIME 1 and 2; however, it will be necessary to develop damage factors in other countries, taking into account threatened species categories and regional differences in the importance of various land use categories. It is also necessary to accumulate detailed data on threatened species across the planet to develop worldwide damage factors.

     

Ecosystem consequences of plant life form changes at three sites in the semiarid United States

Many semiarid rangelands have recently experienced changes in dominant plant life form. Both woody plant expansion into grasslands and the invasion of annual grasses into shrublands have potential influence on regional carbon cycling. Soil carbon content, chemistry, and distribution may change following shifts in dominant plant life form because plant life forms differ in litter chemistry and patterns of detrital input. This study assesses the amount, quality, and distribution of soil C below woody vegetation and grasses at three rangelands in Texas, New Mexico, and Utah. At each of these sites there has been a well-documented shift in dominant plant life form. In Texas and New Mexico, woody plants have increased in grasslands, while grasses have invaded into former shrublands in Utah. We measured total soil carbon, particulate organic matter (POM) C, and the carbon isotopic composition of soil carbon beneath woody plants and grasses at each of these three sites. At the La Copita Research Area in south-central Texas there was significantly more soil C found beneath Prosopis glandulosa, the dominant woody plant, than was found beneath grasses. Mean soil C content to 1 m was 7.2 kg C m^–2 beneath P. glandulosa and 6.0 kg C m^–2 beneath grasses. There was also significantly more POM C beneath P. glandulosa than beneath grasses. Stable carbon isotopic composition indicated that the expansion of P. glandulosa in savannas in Texas first influences carbon cycling in surface soils, then deep soil C, and finally throughout the soil profile. At the Sevilleta National Wildlife Refuge in central New Mexico, we found that there was significantly more soil C in the upper 10 cm of the soil profile beneath Larrea tridentata than was found beneath Bouteloua spp. Stable carbon isotopic composition indicated that the expansion of L. tridentata influenced C cycling throughout the soil profile. At Curlew Valley in northern Utah, we found no significant differences in total profile soil C beneath different plant life forms. However, there was significantly more soil C found at the soil surface beneath woody plants than was observed beneath annual grasses. There was significantly less POM C beneath annual grasses than was found beneath woody plants or perennial grasses. Based on stable carbon isotopic analyses, we concluded that the invasion of grasses into shrublands influenced only the upper 30 cm of the soil profile. We determined that following changes in plant life form dominance, the most consistent change in soil C was an alteration in content and distribution of POM C, a slowly cycling pool of soil C. While we failed to find a consistent change in total profile soil C with plant life form across our sites, the change in soil C chemistry may have important implications for long-term soil C storage in semiarid systems where there have been shifts in plant life form. Received: 30 March 1999 / Accepted: 11 August 1999     

Testing for local species saturation with nonindependent regional species pools

Identifying the factors controlling local community structure is a central problem in ecology. Ecologists frequently use regression to test for a nonlinear saturating relationship between local community richness and regional species pool richness, suggesting that species interactions limit the number of locally coexisting species. However, communities in different regions are not independent if regions share species. We present a Monte Carlo test for whether an observed local-regional richness relationship is significantly different from that expected when regions are nonindependent and species interactions do not limit community membership. We illustrate this test with data from experimental microcosm communities. A conventional F -test suggests a significant saturating relationship between realized community richness and species pool richness. However, the Monte Carlo test fails to reject the null hypothesis that species interactions do not affect community richness. Strong species interactions do not necessarily set an absolute upper limit to the number of locally coexisting species.     

Global and regional brain metabolic scaling and its functional consequences

Background  

Information processing in the brain requires large amounts of metabolic energy, the spatial distribution of which is highly heterogeneous, reflecting the complex activity patterns in the mammalian brain.     

Ecosystem engineering and predation: the multi-trophic impact of two ant species

1. Ants are ubiquitous ecosystem engineers and generalist predators and are able to affect ecological communities via both pathways. They are likely to influence any other terrestrial arthropod group either directly or indirectly caused by their high abundance and territoriality. 2. We studied the impact of two ant species common in Central Europe, Myrmica rubra and Lasius niger, on an arthropod community. Colony presence and density of these two ant species were manipulated in a field experiment from the start of ant activity in spring to late summer. 3. The experiment revealed a positive influence of the presence of one ant colony on densities of decomposers, herbivores and parasitoids. However, in the case of herbivores and parasitoids, this effect was reversed in the presence of two colonies. 4. Generally, effects of the two ant species were similar with the exception of their effect on Braconidae parasitoid densities that responded positively to one colony of M. rubra but not of L. niger. 5. Spider density was not affected by ant colony manipulation, but species richness of spiders responded positively to ant presence. This effect was independent of ant colony density, but where two colonies were present, spider richness was significantly greater in plots with two M. rubra colonies than in plots with one colony of each ant species. 6. To test whether the positive ecosystem engineering effects were purely caused by modified properties of the soil, we added in an additional experiment (i) the soil from ant nests (without ants) or (ii) unmodified soil or (iii) ant nests (including ants) to experimental plots. Ant nest soil on its own did not have a significant impact on densities of decomposers, herbivores or predators, which were significantly, and positively, affected by the addition of an intact nest. 7. The results suggest an important role of both ant species in the grassland food web, strongly affecting the densities of decomposers, herbivores and higher trophic levels. We discuss how the relative impact via bottom-up and top-down effects of ants depends on nest density, with a relatively greater top-down predatory impact at higher densities.     

Size of the local species pool determines invasibility of a C4-dominated grassland

The size of the local species pool (i.e., species surrounding a community capable of dispersal into that community) and other dispersal limitations strongly influence native plant community composition. However, the role that the local species pool plays in determining the invasibility of communities by exotic plants remains to be evaluated. We hypothesized that the richness and abundance of exotic species would be greater in C4‐dominated grassland communities if the local species pool included a larger proportion of exotic species. We also predicted that an increase in the exotic species pool would increase the invasibility of sites thought to be resistant to invasion (annually burned grassland). To test these hypotheses, study plots were established within two long‐term (>20 yr) fire experiments at a tallgrass prairie preserve in NE Kansas (USA). Study plots were surrounded by either a small pool of exotic species (small species pool (SSP) plots; six species) or a larger exotic species pool (large species pool (LSP) plots; 18 species). We found that richness and absolute cover of exotic species was significantly (P<0.001) lower (～70 and 90%, respectively) in annually burned compared to unburned plots, regardless of the size of the exotic species pool. As predicted, exotic species richness was higher (P<0.001) for LSP plots (3.9 per 250 m2) than for SSP plots (0.7 per 250 m2); however, absolute cover was unaffected by the size of the exotic species pool. In the absence of fire, plots with a LSP had four times as many exotic species than SSP plots. An increase in the local exotic species pool also increased the invasibility of annually burned grassland. Indeed, richness of exotic plant species in annually burned LSP plots did not differ from unburned plots with a SSP, indicating that a larger pool of exotic species countered the negative effects of fire. These findings have important implications for predicting how the invasion of plant communities may respond to human‐induced global changes, such as habitat fragmentation. Community characteristics or factors such as frequent fires in grasslands may impart resistance to invasions by exotic species in large, intact ecosystems. However, when a large pool of exotic species is present, frequent fire may not be sufficient to limit the invasions of exotic plants in fragmented landscapes.     

Asymmetry in species regional dispersal ability and the neutral theory

The neutral assumption that individuals of either the same or different species share exactly the same birth, death, migration, and speciation probabilities is fundamental yet controversial to the neutral theory. Several theoretical studies have demonstrated that a slight difference in species per capita birth or death rates can have a profound consequence on species coexistence and community structure. Whether asymmetry in migration, a vital demographic parameter in the neutral model, plays an important role in community assembly still remains unknown. In this paper, we relaxed the ecological equivalence assumption of the neutral model by introducing differences into species regional dispersal ability. We investigated the effect of asymmetric dispersal on the neutral local community structure. We found that per capita asymmetric dispersal among species could reduce species richness of the local community and result in deviations of species abundance distributions from those predicted by the neutral model. But the effect was moderate compared with that of asymmetries in birth or death rates, unless very large asymmetries in dispersal were assumed. A large difference in species dispersal ability, if there is, can overwhelm the role of random drift and make local community dynamics deterministic. In this case, species with higher regional dispersal abilities tended to dominate in the local community. However, the species abundance distribution of the local community under asymmetric dispersal could be well fitted by the neutral model, but the neutral model generally underestimated the fundamental biodiversity number but overestimated the migration rate in such communities.     

Hydraulic lift and tolerance to salinity of semiarid species: consequences for species interactions

The different abilities of plant species to use ephemeral or permanent water sources strongly affect physiological performance and species coexistence in water-limited ecosystems. In addition to withstanding drought, plants in coastal habitats often have to withstand highly saline soils, an additional ecological stress. Here we tested whether observed competitive abilities and C–water relations of two interacting shrub species from an arid coastal system were more related to differences in root architecture or salinity tolerance. We explored water sources of interacting Juniperus phoenicea Guss. and Pistacia lentiscus L. plants by conducting physiology measurements, including water relations, CO₂ exchange, photochemical efficiency, sap osmolality, and water and C isotopes. We also conducted parallel soil analyses that included electrical conductivity, humidity, and water isotopes. During drought, Pistacia shrubs relied primarily on permanent salty groundwater, while isolated Juniperus plants took up the scarce and relatively fresh water stored in upper soil layers. As drought progressed further, the physiological activity of Juniperus plants nearly stopped while Pistacia plants were only slightly affected. Juniperus plants growing with Pistacia had stem-water isotopes that matched Pistacia, unlike values for isolated Juniperus plants. This result suggests that Pistacia shrubs supplied water to nearby Juniperus plants through hydraulic lift. This lifted water, however, did not appear to benefit Juniperus plants, as their physiological performance with co-occurring Pistacia plants was poor, including lower water potentials and rates of photosynthesis than isolated plants. Juniperus was more salt sensitive than Pistacia, which withstood salinity levels similar to that of groundwater. Overall, the different abilities of the two species to use salty water appear to drive the outcome of their interaction, resulting in asymmetric competition where Juniperus is negatively affected by Pistacia. Salt also seems to mediate the interaction between the two species, negating the potential positive effects of an additional water source via hydraulic lift.     

Ecosystem function and species loss – a microcosm study

There are too many kinds of organisms to be able to study and manage each, yet the loss of a single species can sometimes unravel an ecosystem. Such `fusewire species'– critical in the same sense that an electrical fuse can cut out a whole circuit – would be a rewarding focus for research and management effort. However, this approach can only be effective if these `fusewires' represent but a small proportion of the number of species in the system.  

Aim

To demonstrate methods for measuring what proportion of the species in a system are critical to ecosystem function.  

Methods

The prevalence of fusewire species was measured in manipulative experiments on an aquatic microcosm.  

Results

No single genus deletion caused changes in key characteristics of the system.  

Main conclusions

Comparison of these results with other published studies shows that the proportion of critical fusewire species varies amongst different ecosystems. The oxidation pond microcosms were shown to contain no single species indispensable to system function. They appear to be ill-suited to a management strategy which focuses on priority eukaryote species. However, a single study provides no evidence that this result is general or even typical of other kinds of ecosystems; it is presented here as an empirical model. Other methods of investigation are available; they are less experimentally rigorous but more practical. These could provide important guidance in planning an approach to management in a particular ecosystem.