Respiratory succession and community succession of bacterioplankton in seasonally anoxic estuarine waters

Anoxia occurs in bottom waters of stratified estuaries when respiratory consumption of oxygen, primarily by bacteria, outpaces atmospheric and photosynthetic reoxygenation. Once water becomes anoxic, bacterioplankton must change their metabolism to some form of anaerobic respiration. Analysis of redox chemistry in water samples spanning the oxycline of Chesapeake Bay during the summer of 2004 suggested that there was a succession of respiratory metabolism following the loss of oxygen. Bacterial community doubling time, calculated from bacterial abundance (direct counts) and production (anaerobic leucine incorporation), ranged from 0.36 to 0.75 day and was always much shorter than estimates of the time that the bottom water was anoxic (18 to 44 days), indicating that there was adequate time for bacterial community composition to shift in response to changing redox conditions. However, community composition (as determined by PCR-denaturing gradient gel electrophoresis analysis of 16S rRNA genes) in anoxic waters was very similar to that in surface waters in June when nitrate respiration was apparent in the water column and only partially shifted away from the composition of the surface community after nitrate was depleted. Anoxic water communities did not change dramatically until August, when sulfate respiration appeared to dominate. Surface water populations that remained dominant in anoxic waters were Synechococcus sp., Gammaproteobacteria in the SAR86 clade, and Alphaproteobacteria relatives of Pelagibacter ubique, including a putative estuarine-specific Pelagibacter cluster. Populations that developed in anoxic water were most similar (<92% similarity) to uncultivated Firmicutes, uncultivated Bacteroidetes, Gammaproteobacteria in the genus Thioalcalovibrio, and the uncultivated SAR406 cluster. These results indicate that typical estuarine bacterioplankton switch to anaerobic metabolism under anoxic conditions but are ultimately replaced by different organisms under sulfidic conditions.     

Testing the assumptions of chronosequences in succession

Many introductory ecology textbooks illustrate succession, at least in part, by using certain classic studies (e.g. sand dunes, ponds/bogs, glacial till, and old fields) that substituted space for time (chronosequence) in determining the sequences of the succession. Despite past criticisms of this method, there is continued, often uncritical, use of chronosequences in current research on topics besides succession, including temporal changes in biodiversity, productivity, nutrient cycling, etc. To show the problem with chronosequence-based studies in general, we review evidence from studies that used non-chronosequence methods (such as long-term study of permanent plots, palynology, and stand reconstruction) to test the space-for-time substitution in four classic succession studies. In several cases, the tests have used the same locations and, in one case, the same plots as those in the original studies. We show that empirical evidence invalidates the chronosequence-based sequences inferred in these classic studies.     

Experimental manipulation of succession in heathland ecosystems

An experiment was carried out in two heathland ecosystems, one dominated by Calluna vulgaris and the other by Molinia caerulea, to analyse the effects of soil organic matter accumulation and nutrient mineralization on plant species dynamics during succession. The experiment included one treatment that received nutrient solution and two treatments where the rate of soil organic matter accumulation was reduced by removing litter or accelerated by adding litter. In a fourth treatment the C. vulgaris litter produced in the C. vulgaris-dominated plots was replaced by litter of M. caerulea and vice versa. Treatments were applied over 8 years. Addition of nutrient solution caused C. vulgaris to decline, and grass species to increase sharply, compared to the control plots. Addition of litter enhanced both N mineralization and the biomass of M. caerulea and Deschampsia flexuosa but reduced the biomass of C. vulgaris. The effects of replacing C. vulgaris litter by M. caerulea litter, or vice versa, on N mineralization and species dynamics could not be attributed to differences between the decomposability of the different litter materials that were transferred. The results confirm the hypothesis that increased litter inputs accelerate the rate of species replacement during succession.     

Seasonal succession of ciliates in lake constance

We found a recurrent seasonal pattern in abundance and composition of planktonic ciliates in Lake Constance, FRG, over a three-year period. Abundance peaks occurred in early spring and summer/autumn, while ciliate numbers were low in late spring (clear-water phase) and winter. Prostomatida and Oligotrichida dominated in early spring. They responded immediately to the phytoplankton spring bloom, while Haptorida, Peritrichida, and large Scuticociliatida (Histiobalantium) were delayed by 1 to 2 weeks. The spring community broke down at the onset of the clear-water phase.Pelagohalteria viridis containing symbiontic algae appeared shortly after this event. A highly diverse community was recorded in summer/autumn. Peritrichida, small Oligotrichida, and large Scuticociliatida reached their maxima during this season. Small Scuticociliatida were rare throughout the year and contributed moderately to total ciliate numbers only during the cold season. The observed seasonal sequence of pelagic ciliates in Lake Constance is discussed in relation to simultaneously collected data on potential food organisms and grazers.     

Colonization and succession in deep-sea ecosystems

Experimental studies reveal generally slow but variable colonization rates in deep-sea soft bottoms. Species successions following biological disturbance appear to be complex and unpredictable, potentially playing a role in structuring these diverse communities. In contrast, physical processes probably play a prominent role in the rapid species turnovers observed at hydrothermal vents. Better information concerning disturbance regimes, recruitment processes and resource utilization is required to elaborate successional mechanisms in both soft-bottom and vent environments.     

Secondary succession impairment in restored mangroves

In this work it was hypothesized that secondary succession on sites that have been managed by single planting of mangrove species is compromised by residual stressors, which could reduce the ecosystem??s structural development and lower its functions. Forest structure and environmental characteristics of three planted mangrove stands are compared with reference sites. Structural attributes showed significant differences in the comparison of planted and reference stands. Avicennia schaueriana was the dominant species within both natural regeneration and old-growth stands in terms of basal area (99.2 and 99.4?%, 69.6 and 84.5?%, and 59.0 and 87.1?% for Itacorubi, Saco Grande, and Ratones, respectively). Restoration stands were dominated by Laguncularia racemosa (80.6 and 94.2?% for Saco Grande and Ratones, respectively), except at one site (Itacorubi), where A. schaueriana prevailed (99.7?%). Even though restoration and regeneration stands at Itacorubi showed similar species composition and dominance, cohort sorting revealed an inferior regeneration potential in the restoration stand. Multiple correlation analysis indicated that variables related to elevation disruptions (p _w ?=?0.521) were the environmental drivers responsible for the differences observed in forest structure. At restoration sites an impaired pattern of secondary succession was observed, indicating that single species plantings may be ineffective if characteristics of the site, as well as of the area surrounding it, are not considered. The inadequate management of restoration sites can therefore have implications for both immediate and long-term large-scale ecosystem services.     

Secondary succession in two subtropical forests

We studied secondary succession in two subtropical evergreen broad-leaved forests near Shanghai, China that had been harvested 2–60 years earlier. Shrubs were thinned in one of the forests to about 60% of their original density for the first 20 years after harvesting. The other was not disturbed after harvesting. Five stands were sampled in each forest. Species composition and richness varied little during succession. Biomass, soil organic matter, total soil nitrogen, and soil water all increased with time. Soil organic matter and total nitrogen were significantly less in thinned forest than in undisturbed forests, but soil moisture did not vary with shrub thinning. Total tree density did not change over time, suggesting that species replacements were not driven by self-thinning. The eventual replacement of shrubs by trees occurred because shrub density decreased whereas tree density remained constant and tree mass increased.     

Marine invertebrates in an algal succession. I. Variations in abundance and diversity with succession

This is a study of the effects of successional algal changes on the community of small invertebrate animals living in the algae at a marine intertidal boulder field. At each of 14 sampling times over a 2-yr period, replicate samples were taken from all stages of succession. By sampling all successional stages simultaneously at each date over an extended period, we could analyze spatial and temporal variations within and among stages. Species richness, diversity, and abundance of the whole invertebrate community increased from early to middle successional stages, while remaining similar from middle to late stages. Evenness remained about constant throughout succession. The increases occur primarily through the addition of species to the community. Some taxonomic groups in this study showed different patterns. Unlike patterns seen in birds, insects, and spiders associated with terrestrial plant succession, species replacements are rare, and there are few early and middle successional specialists. Trophic structure changed markedly during succession. Spatial variation did not change with succession but temporal variation declined. Many of these results are different from the predictions of equilibrium-based theory. Succession in this marine animal community is very different from that in terrestrial animal groups, probably because of the higher rate of exchange of matter in this open coast system.     

Ontogenetic succession in Amazonian ant trees

In the tropical rain forest of the Central Amazon, a small guild of specialized plant-ants nest exclusively inside the leaf domatia of Tachigali (Caesalpinaceae). Since normally each plant houses a single ant colony, the number of unoccupied plants in the environment is quite low and the number of potential colonizer queens is high, the conditions for intense intra and interspecific competion for nesting site are set. This study describes an intriguing ecological pattern that explains how this ant guild can coexist using exclusively Tachigali plants as nesting site. We found that each of the eight different ant species occurs in plants of different heights (Kruskal-Wallis test statistics=148.6, d.f.=7, P<0.001). This spatial pattern emerges due to interspecific ant colony replacements along the ontogeny of the tree. We discuss that this pattern can be seen as an ontogenetic succession since an organism's ontogeny is defining a non-seasonal, directional and continuous pattern of colonization and extinction of interacting populations. Ontogenetic succession can be classified at the same level of another class of succession that has been termed degradative succession. The ontogenetic succession view highlights chains of indirect interactions that are mediated by the focal organism and has the potential to produce unexpected outcomes in population interactions and community structure. We suggest that ontogenetic succession should be widespread in nature and that the concept can contribute to our understanding of the temporal and spatial organization of the world biodiversity .     

Wetland development in early stages of volcanic succession

Abstract. Wetland vegetation developed in the crater of Mount Usu, northern Japan, soon after the 1977–1978 eruptions which destroyed the vegetation. The cover of each species was measured in 1994 in 118 50 cm × 50 cm plots situated in transects and related to environmental factors (elevation, water depth, soil texture, soil compaction, soil organic matter, and soil pH) to clarify vegetation development. Five vegetation types were recognized dominated by Eleocharis kamtschatica, Equisetum arvense, Lythrum salicaria, Juncus fauriensis and Phragmites australis respectively. Sedge/grass marsh and reed swamp dominated deep-water sites; willow swamp and wet meadow vegetation characterized shallow-water sites, indicating that vegetation zonation developed soon after the eruption. Since those wetland plants were derived neither from seed banks nor from vegetative propagules, they had to immigrate from outside the summit areas. However, except for willows, most species lack the ability for long-distance dispersal. Late successional species, such as P. australis established in the early stages of the primary succession. The water depth varied by 27.5 cm among the plots. Coarse soil particles accumulated, and pH (5.22–6.55) was low on the elevated sites. Organic matter ranged from 2.8 % to 19.1 %, and was high on the elevated sites. Water depth was responsible for the establishment of large-scale vegetation patterns, while edaphic factors, i.e. soil compaction, pH, and organic matter, were determinants of small-scale vegetation patterns. Among the edaphic factors, soil compaction appeared to have a strong influence on vegetation development.     

Early succession of bacterial biofilms in paper machines

Formation of biofilms causes severe problems in paper machines, and hence financial costs. It would be preferable to prevent attachment of the primary-colonizing bacteria than to control the growth of secondary communities, which are sheltered by exopolysaccharide slime layers. We have therefore investigated the early succession of paper-machine biofilms by incubating stainless-steel test coupons in the process water-flow lines in two paper machines operating in slightly alkaline conditions in temperatures (45 and 49°C) supporting thermophilic microbes. Microbial succession was profiled using length heterogeneity analysis of PCR-amplified 16S rRNA genes (LH-PCR) and linking the sequence data of the created 16S rRNA gene libraries to the dominant LH-PCR peaks. Although the bacterial fingerprints obtained from the attached surface communities varied slightly in different samples, the biomarker signals of the dominating primary-colonizing bacterial groups remained high over time in each paper machine. Most of the 16S rRNA gene copies in the early biofilms were assigned to the genera Rhodobacter, Tepidimonas, and Cloacibacterium. The dominance of these sequence types decreased in the developing biofilms. Finally, as phylogenetically identical primary-colonizers were detected in the two different paper mills, the machines evidently had similar environmental conditions for bacterial growth and potentially a common source of contamination.     

Marine invertebrates in an algal succession. II. Tests of hypotheses to explain changes in diversity with succession

The invertebrate community living in algal mats on intertidal boulders was studied for 2 yr. The diversity and abundance of the animals increased between the early and middle stages of algal succession, then remained similar into the later stage. Three possible mechanisms producing this pattern were investigated experimentally by manipulating natural algal mats and plastic algal mimics in the field and laboratory and evaluating the community of colonizing invertebrates. The first, the “ecological time” hypothesis, suggests that there are more species and individuals in later stages because they accumulate slowly with time; this hypothesis was tested experimentally and rejected. A second, “algal toxicity” hypothesis suggests that species richness and abundance are lower in earlier successional stages because the early colonizing green algae are more toxic to animals than are the later red algae. This hypothesis was also tested experimentally and rejected. The third, “habitat complexity” hypothesis suggests that increases in complexity of physical aspects of algal structure (biomass, surface area) cause increases in invertebrate richness and abundance. The fact that this result was found in both living algae and plastic mimics indicates that biological aspects of algal structure apparently have only minor importance. Algal biomass and surface area increase from early to middle successional stages; middle and late successional stages are similar. In general, increases in these physical aspects of algal structure produce concomitant increases in the abundance and diversity of the associated animal community. With higher biomass and surface area, increased numbers of individuals accumulate in algal mats. Because a larger sample of the available pool of individuals is therefore collected, more species are found in a given area of algal mat when the structure is more complex. The successional patterns of increase in species richness of this invertebrate community seem to result from this sampling phenomenon, rather than from increases in numbers of resources (i.e., “niches”).     

Patterns of saproxylic beetle succession in loblolly pine

• 1 Patterns of insect succession in dead wood remain unclear, particularly beyond the first several years of decay. In the present study, saproxylic beetles were sampled from loblolly pine (Pinus taeda L.) logs aged between 1 month and 9 years old using both emergence traps attached to logs in the field and rearing bags in the laboratory.
• 2 Species richness peaked within the first year as a result of a diverse assemblage of bark beetles, wood‐borers and predators associated with young logs. After the phloem phase, there were no significant differences in species richness among decay classes.
• 3 Beetle communities differed significantly among decay classes, with 25 and seven species being significantly associated with young and old logs, respectively.

     

Development of vegetation patterns in early primary succession

Question: We investigated colonisation filters in early plant community development on a glacial outwash plain. We asked if these were related to seed limitation or to a lack of safe sites, if topographical heterogeneity affected species patchiness and how species life cycles influence successional trajectories. Location: An outwash plain (Skeiðarársandur) in southeast Iceland. Methods: We identified surface heterogeneity at two different scales, ca. 10–15 cm (larger stones and established plants) and ca. 50 m (shallow depressions representing dry river beds) at two study sites. We quantified species cover, flowering plant density, seed production, seed rain, seed bank density, seedling emergence and seedling survival from June 2005 to June 2007 for the whole plant community, and measured seed production for five species. Results: Mean vegetation cover was <2.5% at the sites. Low emergence rates and high seedling mortality were the two main recruitment filters. Only 1.4% of seedlings emerging in 2005 survived into the 2007 growing season. Topographical heterogeneity had little effect on plant colonisation. High annual variation was recorded, and the two study sites (ca. 2 km apart) differed in their colonisation success. Of the five species, establishment of Cerastium alpinum and Silene uniflora was most limited by lack of seeds, whereas establishment of Luzula spicata, Poa glauca and Rumex acetosella was most limited by safe sites. Conclusions: We conclude that colonisation processes and patterns in early primary succession on Skeiðarársandur were largely influenced by stochastic factors.     

Phytoplankton succession in Lake Valencia,Venezuela

Phytoplankton counts and supporting physical and chemical data were taken on Lake Valencia, Venezuela, over a five-year interval. The data are used to test the validity of a successional paradigm for class-level taxa. According to the paradigm, formulated from previous studies of Lake Lanao, Philippines, and from data on temperate lakes, the order of taxa from early to late succession is: diatoms, chlorophytes, blue-green algae, dinoflagellates. A successional episode is considered to begin when stability of a water column is restored after deep mixing. As the episode progresses, there is a steady decrease in concentration of the limiting macronutrient (in this case, N). In a test of the validity of the paradigm for Lake Valencia, dates of exceptional population increase or decrease were obtained for each taxon. Since nitrate concentration declines steadily as succession progresses, the entry of a given taxon into the successional sequence is indicated quantitatively by the mean nitrate concentration on dates of exceptional increase in population density, and exit from the successional sequence is indicated by mean nitrate concentration on dates of exceptional population declines. The successional position of each major taxon, bounded by its entry and exit in the sequence, can be mapped on the complete spectrum of nitrate concentrations observed in the lake. For Lake Valencia, the nitrate mapping procedure agrees exactly with the predictions based on the successional paradigm. Conformance of Lake Valencia phytoplankton with predictions made a priori suggests that there is a generalized pattern in the phytoplankton succession of the mixed layers of temperate and tropical lakes.