Ecological correlates of mammal β‐diversity in Amazonian land‐bridge islands: from small‐ to large‐bodied species

Aim

Mega hydroelectric dams have become one of the main drivers of biodiversity loss in the lowland tropics. In these reservoirs, vertebrate studies have focused on local (α) diversity measures, whereas between‐site (β) diversity remains poorly assessed despite its pivotal importance in understanding how species diversity is structured and maintained. Here, we unravel the patterns and ecological correlates of mammal β‐diversity, including both small (SM) and midsized to large mammal species (LM) across 23 islands and two continuous forest sites within a mega hydroelectric reservoir.

Location

Balbina Hydroelectric Dam, Central Brazilian Amazonia.

Methods

Small mammals were sampled using live and pitfall traps (48,350 trap‐nights), and larger mammals using camera traps (8,160 trap‐nights). β‐diversity was examined for each group using multiplicative diversity decomposition of Hill numbers, which considers the importance of rare, common and dominant species, and tested to what extent those were related to a set of environmental characteristics measured at different spatial scales.

Results

β‐diversity for both mammal groups was higher when considering species presence–absence. When considering species abundance, β‐diversity was significantly higher for SM than for LM assemblages. Habitat variables, such as differences in tree species richness and percentage of old‐growth trees, were strong correlates of β‐diversity for both SMs and LMs. Conversely, β‐diversity was weakly related to patch and landscape characteristics, except for LMs, for which β‐diversity was correlated with differences in island sizes.

Main conclusions

The lower β‐diversity of LMs between smaller islands suggests subtractive homogenization of this group. Although island size plays a major role in structuring mammal α‐diversity in several land‐bridge islands, local vegetation characteristics were additional key factors determining β‐diversity for both mammal groups. Maintaining the integrity of vegetation characteristics and preventing the formation of a large set of small islands within reservoirs should be considered in long‐term management plans in both existing and planned hydropower development in lowland tropical forests.

     

Bats are Not Birds – Different Responses to Human Land‐use on a Tropical Mountain

Land‐use intensification has consequences for biodiversity and ecosystem functioning, with various taxonomic groups differing widely in their sensitivity. As land‐use intensification alters habitat structure and resource availability, both factors may contribute to explaining differences in animal species diversity. Within the local animal assemblages the flying vertebrates, bats and birds, provide important and partly complementary ecosystem functions. We tested how bats and birds respond to land‐use intensification and compared abundance, species richness, and community composition across a land‐use gradient including forest, traditional agroforests (home garden), coffee plantations and grasslands on Mount Kilimanjaro, Tanzania. Furthermore, we asked how sensitive different habitat and feeding guilds of bats and birds react to land‐use intensification and the associated alterations in vegetation structure and food resource availability. In contrast to our expectations, land‐use intensification had no negative effect on species richness and abundance of all birds and bats. However, some habitat and feeding guilds, in particular forest specialist and frugivorous birds, were highly sensitive to land‐use intensification. Although the habitat guilds of both, birds and bats, depended on a certain degree of vegetation structure, total bat and bird abundance was mediated primarily by the availability of the respective food resources. Even though the highly structured southern slopes of Mount Kilimanjaro are able to maintain diverse bat and bird assemblages, the sensitivity of avian forest specialists against land‐use intensification and the dependence of the bat and bird habitat guilds on a certain vegetation structure demonstrate that conservation plans should place special emphasis on these guilds.     

Multi‐trophic impacts of an invasive aquatic plant

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ResDisMapper: An r package for fine‐scale mapping of resistance to dispersal

Management of biological invasions and conservation activity in the fight against habitat fragmentation both require information on how ongoing dispersal of organisms is affected by the environment. However, there are few landscape genetic computer programs that map resistance to dispersal at small spatiotemporal scales. To facilitate such analyses, we present an r package named ResDisMapper for the mapping of resistance to dispersal at small spatiotemporal scales, without the need for prior knowledge on environmental features or intensive computation. Based on the concept of isolation by distance (IBD), ResDisMapper calculates resistance using deviations of each pair of samples from the general IBD trend (IBD residuals). The IBD residuals are projected onto the studied area, which allows construction and visualization of a fine‐scale map of resistance based on spatial accumulation of positive or negative IBD residuals. In this study, we tested ResDisMapper with both simulated and empirical data sets and compared its performance with two other popular landscape genetic programs. Overall, we found that ResDisMapper can map resistance with relatively high accuracy. The latest version of the package and associated documentation are available on Github ( https://github.com/takfung/ResDisMapper ).     

Multi‐scale effects of habitat structure and landscape context on a vertebrate with limited dispersal ability (the brown‐throated sloth,Bradypus variegatus)

As human population, food consumption, and demand for forest products continue to rise over the next century, the pressures of land‐use change on biodiversity are projected to intensify. In tropical regions, countryside habitats that retain abundant tree cover and structurally complex canopies may complement protected areas by providing suitable habitats and landscape connectivity for a significant portion of the native biota. Species with low dispersal capabilities are among the most at risk of extinction as a consequence of land‐use change. We assessed how the spatial distribution of the brown‐throated sloth (Bradypus variegatus), a model species for a vertebrate with limited dispersal ability, is shaped by differences in habitat structure and landscape patterns of countryside habitats in north‐central Costa Rica using a multi‐scale framework. We quantified the influence of local habitat characteristics and landscape context on sloth occurrence using mixed‐effects logistic regression models. We recorded 27 sloths within countryside habitats and found that both local and landscape factors significantly influenced their spatial distribution. Locally, sloths favored structurally complex habitats, with greater canopy cover and variation in tree height and basal area. At the landscape scale, sloths demonstrated a preference for habitats with high proportions of forest and nearby large tracts of forest. Although mixed‐use areas and tree plantations are not substitutes for protected forests, our results suggest they provide important supplemental habitats for sloths. To promote the conservation and long‐term viability of sloth populations in the tropical countryside, we recommend that land managers retain structurally complex vegetation and large patches of native habitat.     

Subtle Land‐Use Change and Tropical Biodiversity: Dung Beetle Communities in Cerrado Grasslands and Exotic Pastures

Although many tropical savannas are highly influenced by humans, the patterns of biodiversity loss in these systems remain poorly understood. In particular, the biodiversity consequences of replacing native grasslands with exotic pastures have not been studied. Here we examine how the conversion of the native savanna grasslands affects dung beetle communities. Our study was conducted in 14 native (grassland: campo limpo), and 21 exotic (Urochloa spp. monoculture) pastures in Carrancas, Minas Gerais, Brazil. We collected 4996 dung beetle individuals from 66 species: 3139 individuals from 50 species in native pastures and 1857 individuals from 55 species in the exotic pastures. Exotic pastures had lower dung beetle richness, abundance and biomass than native pastures. Species composition between the two pasture types was significantly different and exotic pastures were dominated by few abundant species. Indicator species analysis detected 16 species indicators of native pastures and three of exotic pastures, according to relative abundance and frequency in each pasture system. Our results show that the conversion of native pastures to exotic pastures leads to a predictable loss of local species richness, increasing dominance and changes in species composition. These results highlight the importance of maintaining native pastures in the Cerrado agro‐pastoral landscape. Abstract in Portuguese is available at http://www.blackwell‐synergy.com/loi/btp .     

Landscape genetics of an early successional specialist in a disturbance‐prone environment

Species that specialize in disturbed habitats may have considerably different dispersal strategies than those adapted to more stable environments. However, little is known of the dispersal patterns and population structure of such species. This information is important for conservation because many postfire specialists are at risk from anthropogenic changes to natural disturbance regimes. We used microsatellite markers to assess the effect of landscape variation and recent disturbance history on dispersal by a small mammal species that occupies the early seral stage of vegetation regeneration in burnt environments. We predicted that a postfire specialist would be able to disperse over multiple habitat types (generalist) and not exhibit sex‐biased dispersal, as such strategies should enable effective colonization of spatially and temporally variable habitat. We found significant differentiation between sites that fitted an isolation‐by‐distance pattern and spatial autocorrelation of multilocus genotypes to a distance of 2–3 km. There was no consistent genetic evidence for sex‐biased dispersal. We tested the influence of different habitat‐ and fire‐specific landscape resistance scenarios on genetic distance between individuals and found a significant effect of fire. Our genetic data supported recently burned vegetation having greater conductance for gene flow than unburnt habitat, but variation in habitat quality between vegetation types and occupied patches had no effect on gene flow. Postfire specialists must evolve an effective dispersal ability to move over distances that would ensure access to early successional stage vegetation. Natural disturbance and natural heterogeneity may therefore not influence population genetic structure as negatively as expected.     

A multi‐scale analysis of fragmentation effects on remnant plant species richness in Phoenix,Arizona

Aim Understanding complex ecological phenomena, such as the determinants of species richness, is best achieved by investigating their properties at different spatial scales. Factors significantly affecting the number of species occurring at one scale may not impact on richness at other scales. While this scale dependence has become increasingly recognized, there still remains a need to elucidate exactly how richness is structured across scales, and which mechanisms are influential for determining this important community property. This study explores how woody plant species richness varies in a fragmented system at multiple scales, and which factors are primarily responsible for these patterns. Location The study area is located in the Sonoran Desert within the bounds of metropolitan Phoenix, Arizona, which is the locus of the Central Arizona–Phoenix Long‐Term Ecological Research (CAP‐LTER) site. Methods Estimates of local and fragment plant species richness were generated from field data collected from 22 sites. Independent variables describing fragment sites were also calculated, including area, habitat heterogeneity, density of individuals, mean elevation, and extent of isolation. Structural equation modelling, multiple regression, and analysis of covariance were used to assess the contribution of independent variables to richness at the fragment and local scales. Results Fragment species richness was significantly influenced by area, though not isolation, habitat heterogeneity, mean elevation, or density of individuals. Local richness was not significantly related to fragment area, but was positively related to fragment richness, plant density, and elevation. Main conclusions The fragment species–area effect resulted from larger remnants supporting higher numbers of individuals at comparable densities, increasing richness through either passive sampling of progressively less common species and/or lower extinction rates among larger populations. Without using multi‐temporal data it is not possible to disentangle these mechanisms. We found that patterns evident at one scale are not necessarily apparent at other scales, as elevation and density of individuals significantly affected richness at the local scale but not at the fragment scale. These results lend support to the concept that mechanisms influencing the species richness of natural communities may be operable only within certain domains and that relevant scales should be specified.     

Scale‐appropriate spatial modelling to support area‐wide management of a polyphagous fruit fly (Diptera: Tephritidae)

Control of mobile pests frequently requires area‐wide management (AWM) that spans commercial and non‐commercial habitats. Spatial modelling of habitat suitability can guide investment and implementation of AWM, but current approaches rarely capture population drivers, including local foraging, at an appropriate spatial resolution. To support the development of AWM for the fruit fly pest, Bactrocera tryoni (Tephritidae), we developed a habitat suitability model for the three premier fruit‐growing regions in south‐eastern Australia (~34,780 km²). Expert elicitation and published literature was used to develop a Bayesian network to model the drivers of B. tryoni habitat suitability, as determined by the ability of populations to persist and increase. The effect of uncertainty was tested through sensitivity analysis. The model was then linked with spatially explicit data (at 10 m resolution) to generate risk maps, using moving windows to capture local foraging movement. Habitat suitability was most strongly influenced by host availability within a distance of 200 m. Climate stress, and soil moisture for pupation, was also limiting. Experts were uncertain regarding the relative importance of drivers of host availability (host preference, host density, fruit seasonality), but this did not greatly affect model outputs. Independent trapping data supported model predictions, but their value was limited as traps were placed almost exclusively in optimal or suitable habitat. Amenability to AWM, when assessed as the ratio of suitable or optimal habitat that was under non‐horticultural versus horticultural land‐uses, differed by region (0.15–1.17). However, risk‐mapping did identify where ratios were locally most favourable (lowest). Also, predominantly local dispersal by B. tryoni suggests AWM for pest suppression could be applied at a landscape‐scale. Results show that a relatively simple model could capture the multi‐scale drivers of population dynamics and the complexity of landscapes sufficiently to guide AWM of a mobile pest.     

Mosquitoes of field and forest: the scale of habitat segregation in a diverse mosquito assemblage

Knowledge of the distribution of arthropod vectors across a landscape is important in determining the risk for vector‐borne disease. This has been well explored for ticks, but not for mosquitoes, despite their importance in the transmission of a variety of pathogens. This study examined the importance of habitat, habitat edges, and the scale at which mosquito abundance and diversity vary in a rural landscape by trapping along transects from grassland areas into forest patches. Significant patterns of vector diversity and distinct mosquito assemblages across habitats were found. The scale of individual species' responses to habitat edges was often dramatic, with several species rarely straying even 10 m from the edge. The present results suggest blood‐seeking mosquito species are faithful to certain habitats, which has consequences for patterns of vector diversity and risk for pathogen transmission. This implies that analysts of risk for pathogen transmission and foci of control, and developers of land management strategies should assess habitat at a finer scale than previously considered.     

Floral resources,body size,and surrounding landscape influence bee community assemblages in oak‐savannah fragments

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Relations Between Regional–Local Habitat Loss and Metapopulation Properties of Epiphyllous Bryophytes in the Brazilian Atlantic Forest

Richness and occupancy patterns of epiphyll bryophytes in a fragmented landscape of tropical rain forests in northeastern Brazil (Murici Ecological Station) were investigated to assess the influence of regional and local disappearance of habitat on epiphyllous metapopulation indicators. Bryophytes were collected from ten forest fragments, from the fragment's border to 100 m inside the forest. The number of colonized phorophytes and the cover on leaves were scored. Decreasing trends in regional and local abundance linked to habitat loss were observed, which may be related to the sexual and asexual expression. Although fertility was not related to constancy in the fragments, frequently fertile species colonized more sites within fragments than infertile species. Landscape metrics and indicators of habitat quality explained better the variation in epiphyll richness and occupancy than distance from the forest's edge. This suggests that the abrupt habitat quality modification resulting from edge creation is secondary in the area studied, while irreversible landscape modifications still play an important role. The results add to empirical support that metapopulations are prone to negative and long-term effects in fragmented landscapes. Thus, the selection of priority areas for conservation must take into account the remaining amount of habitat as well as the connectivity between the landscape's patches.     

The problem and promise of scale in multilayer animal social networks

Scale remains a foundational concept in ecology.Spatial scale,for instance,has become a central consideration in the way we understand landscape ecology and animal space use.Meanwhile,scale-dependent social processes can range from fine scale interactions to co-occurrence and overlapping home ranges.Furthermore,sociality can vary within and across seasons.Multilayer networks promise the explicit integration of the social,spatial,and temporal contexts.Given the complex interplay of sociality and animal space use in heterogeneous landscapes,there remains an important gap in our understanding of the influence of scale on animal social networks.Using an empirical case study,we discuss ways of considering social,spatial,and temporal scale in the context of multilayer caribou social networks.Effective integration of social and spatial processes,including biologically meaningful scales,within the context of animal social networks is an emerging area of research.We incorporate perspectives that link the social environment to spatial processes across scales in a multilayer context.     

Species‐specific differences in relative eye size are related to patterns of edge avoidance in an Amazonian rainforest bird community

Eye size shows a large degree of variation among species, even after correcting for body size. In birds, relatively larger eyes have been linked to predation risk, capture of mobile prey, and nocturnal habits. Relatively larger eyes enhance visual acuity and also allow birds to forage and communicate in low‐light situations. Complex habitats such as tropical rain forests provide a mosaic of diverse lighting conditions, including differences among forest strata and at different distances from the forest edge. We examined in an Amazonian forest bird community whether microhabitat occupancy (defined by edge avoidance and forest stratum) was a predictor of relative eye size. We found that relative eye size increased with edge avoidance, but did not differ according to forest stratum. Nevertheless, the relationship between edge avoidance and relative eye size showed a nonsignificant positive trend for species that inhabit lower forest strata. Our analysis shows that birds that avoid forest edges have larger eyes than those living in lighter parts. We expect that this adaptation may allow birds to increase their active daily period in dim areas of the forest. The pattern that we found raises the question of what factors may limit the evolution of large eyes.     

The behavioural ecology and population dynamics of a cryptic ground‐dwelling mammal in an urban Australian landscape

Urbanization results in widespread habitat loss and fragmentation and generally has a negative impact upon native wildlife, in particular ground‐dwelling mammals. The northern brown bandicoot (Isoodon macrourus; Marsupialia: Peramelidae) is one of relatively few native Australian ground‐dwelling mammals that is able to survive within urbanized landscapes. As a consequence of extensive clearing and urban development within the city of Brisbane, bandicoots are now restricted to the mostly small (<10 ha) bushland fragments scattered across the city landscape. Our study examined the behavioural ecology of northern brown bandicoots within habitat fragments located on a major creek‐line, using mark‐recapture population monitoring and radio telemetry. Bandicoots at monitored sites were found to occur at high densities (typically one individual ha^?1), although one‐third of the populations were transient. Radio tracking revealed that bandicoots had relatively small home ranges (mean 1.5 ± 0.2 ha) comprised largely of bushland/grassland with dense, often weed‐infested ground cover. Bandicoots sheltered by day in these densely covered areas and also spent most time foraging there at night, although they occasionally ventured small distances to forage in adjacent maintained parklands and residential lawns. We suggest that introduced tall grasses and other weeds contribute to high habitat quality within riparian habitat fragments and facilitate the persistence of high density populations, comprised of individuals with small home ranges. The generalized dietary and habitat requirements of northern brown bandicoots, as well as a high reproductive output, undoubtedly facilitate the survival of the species in urban habitat fragments. Further research is required on other native mammal species in urbanized landscapes to gain a greater understanding of how best to conserve wildlife in these heavily modified environments.     

Sunken roads as habitats for forest plant species in a dynamic agricultural landscape: effects of age and isolation

Aim This study tests the hypothesis that linear, woody habitat patches surrounding small, sunken rural roads not only function as an unstable sink but also as a true, sustainable habitat for forest plants. Furthermore, factors affecting the presence of forest plant species in sunken roads are determined. Finally, the implications of these findings for the overall metapopulation dynamics of forest plant species in fragmented agricultural landscapes are assessed. Location The study area, c. 155 km² in size, is situated in a fragmented agricultural landscape within the loamy region of central Belgium. Methods Forest species presence–absence data were collected for 389 sunken roads. The effect of area, depth, age and isolation on sunken road species richness was assessed using linear regression and analysis of variance (anova ). Analysis of covariance was employed to study the interaction between age and isolation. Differences in plant community dispersal spectra in relation to sunken road age and isolation were analysed by means of linear regression and anova . Results Sunken roads proved to function as an important habitat for forest plants. The sink‐hypothesis was falsified by a clear species accumulation in time: sunken road species richness significantly increased with the age of the elements. Sunken road age mainly affected species richness through effects on both area and depth, affecting habitat quality and diversity. Furthermore, sunken road isolation had a significant impact on species richness as well, with the number of forest species decreasing with increasing isolation of the elements, indicating dispersal limitation in sunken road habitats. Moreover, a significant age × isolation interaction effect was demonstrated. Differences in regression slopes for isolation between age classes revealed that the effect of isolation intensified with increasing age of the elements. Differential colonization in relation to forest species dispersal capacities probably account for this, as confirmed by the analysis of sunken road plant community dispersal spectra, with the fraction of species with low dispersal capacities increasing with increasing age and decreasing isolation of the elements. Main conclusions During sunken road development, area and depth increase and, gradually, suitable habitat conditions for forest plant species arise. Depending on their ecological requirements and dispersal capacities, forest species progressively colonize these habitats as a function of the element's isolation. The functioning of sunken roads as a sustainable habitat for forest species enhances the metapopulation viability of forest plants in agricultural landscapes and has important consequences for forest restoration practices. Moreover, the results of this work call for integrating the presence of forest species in small‐scaled linear habitat patches in forest fragmentation studies.     

Jaguar Panthera onca Habitat Modeling in Landscapes Facing High Land‐use Transformation Pressure—Findings from Mato Grosso,Brazil

The modeling of top predators' habitats and the understanding of their environmental requirements in landscapes facing high land‐use transformation pressure have long‐standing importance for the development of conservation strategies. Multi‐distance spatial cluster analysis and logistic regression with environmental weighting for pseudo‐absence designation were applied to understand spatial patterns of jaguar occurrence in Mato Grosso state (Central Western Brazil). This location has been under intense deforestation pressure since the 1970s and is historically one of the most important jaguar habitats in the world. By using a model of five independent variables, we were able to achieve a 73.2 percent success rate of case/non‐case classification and indicate not only a general loss of habitat suitability, but also an increasing interruption of potential migration corridors in the state. Our analysis on a regional scale demonstrates the importance of forest and savannah woodland for jaguar habitat maintenance in the Mato Grosso state. The jaguar species demonstrates a sensitivity to landscape fragmentation, which can be parameterized for improved model building by metrics such as edge density and patch size. Comparisons with previous studies in South America show that parameter selection for jaguar habitat modeling is highly scale‐dependent and that habitat suitability in partially transformed landscapes could be maintained if fragmentation is minimized. Recent land‐use transformation, however, has significantly weakened the conservation status of the Pantanal‐Amazon corridor.