Performance of an automated conservation status assessment for the megadiverse vascular flora of Brazil

Conservation status assessments are one of the key scientific measures to inform solutions aiming at minimizing the biodiversity crisis of the Anthropocene, being the IUCN’s Red List approach the most widely used and accepted tool for species-level assessment. However, Red Lists are time-consuming because they necessarily rely on expert evaluation. Thus, the development of automated tools, able to handle the huge increasingly amount of data in less time, are useful for guiding conservation actions. In this sense, the aim of this research is to evaluate an automated preliminary conservation status assessment for all known endemic flora from the megadiverse Brazil. Vascular taxa were derived from the Brazilian Flora 2020 project and occurrences were retrieved from GBIF and SpeciesLink. Data was filtered and then evaluated with the aid of ConR package and high resolution nationwide vegetation maps. The current approach estimates that 28.78 % (22.72–43.75 %) of the endemic flora is threatened by extinction, with different patterns between the six Brazilian ecoregions: from 30.75 % (Amazonia’s lower) to 100 % (Pantanal’s best/upper). The high variation in the estimate is because more than a fifth of the vascular flora is poorly known (<3 records). Accuracy assessment reveals a good agreement between the reference from the Brazilian Flora 2020 project and a binary classification (threatened/not- or near-threatened), with an overall accuracy of 61.67 % (58.84–64.47 %), but with limited capacity to distinguish between the IUCN’s threat levels (Critically Endangered, Endangered and Vulnerable to extinction). Bromeliaceae and Orchidaceae are the families with higher estimated number, proportion in relation to the whole family and uncertainty of estimated threatened species, reflecting that herb is the life form with far more threatened species, followed by shrubs. The presented approach can serve as rapid assessment tool for optimizing efforts and to identify potentially threatened species and hotspots of species that could be considered for timely and effective conservation actions. As a practical recommendation, botanists could prioritize the assessment of the species indicated here as threatened, as there is a high chance of confirming this status, and efforts can be properly addressed for their conservation. Moreover, the automated approach can be useful for monitoring the progress of conservation targets. Finally, further scientific research is urgent to fill the knowledge gap on the Brazilian flora aiming at its conservation.     

Assessment of Hebei flora against the IUCN Red List Criteria in China

Some plants of Hebei Province in China are under threat from human activities, such as over-herding and over-exploitation of wild medicinal plants and industrial plants, etc. To identify the plants in danger in the province and to inspect the quality of the environment encompassing Beijing and Tianjin, a red list of the threatened flora of Hebei Province was produced by using the IUCN Red List Criteria (version 3.1) and its guidelines (version 6.2). Some 262 species were assessed and the results were as follows: (1) the threatened flora include 211 species, accounting for 7.95% of the total native vascular plants. Among them, 44 are Critically Endangered, 80 Endangered and 87 Vulnerable; (2) the destruction of the habitat caused by human activities and the actual or potential exploitation of the plants themselves were the main threat factors of Hebei flora; (3) most of the threatened plants are located in the western, northern and northeastern mountainous regions, namely the key regions of Hebei plant diversity; the endemic and regionally endemic species are severely threatened. Consequently, the assessment not only presented the threatened status of Hebei flora but also indicated the relatively fragile health status of the environment of Beijing and Tianjin. Thus, it is suggested that the application of the IUCN Red List Criteria at the regional level, as an index, could reflect the health status of the local ecosystem. In addition, more concrete measures are needed to conserve the plant diversity and the natural ecosystem of Hebei Province and even the whole region encompassing Beijing and Tianjin.     

Patterns and traits of the endemic plants of Greece

Greece is characterized by high plant diversity (5800 species) and endemism (15.6%). This study attempts a first overall assessment of the taxonomy, distribution, traits and conservation status of the Greek endemic plants. The endemic species belong to 56 families and 242 genera. Most of the endemic plants have a narrow geographical and altitudinal distribution range. The southern floristic regions are richer in endemic species. The species area relationships for endemics (EARs) for island and continental floristic regions explain over 50% of the variation in number of species and are characterized by steep curves. Analysis of the distributional pattern of the endemics by similarity coefficients offers useful insights into the palaeogeography and biogeography of Greece. The endemic species occur at all altitudes, but the altitudinal distribution shows a predominance of local endemics at 0–600 m in the island regions and in higher zones in the continental regions. The life form spectra show a predominance of hemicryptophytes and chamaephytes. This trait seems indicative of their habitat and adaptive strategy and may be related to speciation processes. The overview of the conservation status of the Greek endemics indicates that over 40% of the taxa are threatened or near threatened. © 2010 The Linnean Society of London, Botanical Journal of the Linnean Society, 2010, 162 , 130–422.     

Assessment of Hebei flora against the IUCN Red List Criteria in China

Some plants of Hebei Province in China are under threat from human activities,such as over-herding and over-exploitation of wild medicinal plants and industrial plants,etc.To identify the plants in danger in the province and to inspect the quality of the environment encompassing Beijing and Tianjin,a red list of the threatened flora of Hebei Province was produced by using the IUCN Red List Criteria (version 3.1) and its guidelines (version 6.2).Some 262 species were assessed and the results were as follows:(1) the threatened flora include 211 species,accounting for 7.95% of the total native vascular plants.Among them,44 are Critically Endangered,80 Endangered and 87 Vulnerable;(2) the destruction of the habitat caused by human activities and the actual or potential exploitation of the plants themselves were the main threat factors of Hebei flora;(3) most of the threatened plants are located in the western,northern and northeastern mountainous regions,namely the key regions of Hebei plant diversity;the endemic and regionally endemic species are severely threatened.Consequently,the assessment not only presented the threatened status of Hebei flora but also indicated the relatively fragile health status of the environment of Beijing and Tianjin.Thus,it is suggested that the application of the IUCN Red List Criteria at the regional level,as an index,could reflect the health status of the local ecosystem,In addition,more concrete measures are needed to conserve the plant diversity and the natural ecosystem of Hebei Province and even the whole region encompassing Beijing and Tianjin.     

The Atlantic elements in the Swiss flora: distribution, diversity, and conservation status

The purpose of this study was to examine the composition, distribution, ecology, and conservation status of the Atlantic elements of the Swiss flora. About 195 Atlantic and 80 Mediterranean–Atlantic vascular plant species of the European flora have been used as the basis for our analysis. The complete list of 3,143 taxa has been used as the reference for the Swiss flora. The distributions of the species are illustrated in coincidence maps based on the computer database of the Data Centre of the Swiss Flora in Geneva, Switzerland. Our study demonstrates clearly that the Atlantic flora of Europe requires a new biogeographical appraisal. The Swiss flora comprises 66 Atlantic and Mediterranean–Atlantic taxa, which are taxonomically and ecologically highly diverse. Switzerland contains 44% of all European Sub-Atlantic plants. This confirms the Sub-Atlantic geographical position of Switzerland. Only one Eu-Atlantic species growing in Switzerland, Vicia orobus, can be classified as native with certainty. This species is critically endangered and merits the highest conservation priority. Although a very alpine country, Switzerland has a relatively large number of Mediterranean–Atlantic species. The Atlantic and Mediterranean–Atlantic plants are a very threatened group in Switzerland, with wetland plants the most imperilled ecological group. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

广西木论国家级自然保护区植物物种多样性初步研究

广西木论国家级自然保护区位于我国滇黔桂植物区和华南植物区的交错地带，是古北极与古热带两大植物区系交接过渡的中心地带，在我国生物多样性保护区域中占据不可替代的地位。为摸清广西木论国家级自然保护区植物物种多样性，该文基于历史文献整理、野外调查、标本采集和鉴定以及数据统计分析，对该保护区维管束植物物种多样性组成及其特点进行了研究。结果表明：(1)该区共有维管束植物1 735种，包括石松类和蕨类植物218种、种子植物1 517种，具有较丰富的维管束植物多样性组成以及较复杂的植物区系成分。(2)该区共有中国特有植物486种、广西特有植物56种、岩溶特有植物262种，具有显著的植物特有性。(3)该区共有国家重点保护野生植物68种、广西重点保护野生植物153种、我国极小种群野生植物4种、受威胁植物108种、列入《濒危野生动植物种国际贸易公约》(CITES)附录植物144种，具有较高程度的植物珍稀濒危性。综上表明，该区是我国重要的岩溶植物基因库，具有极其重要的保护价值。该研究结果为自然保护区的建设和管理、植物保护和利用以及其他科研工作的开展提供了重要依据。     

Disjunct,highly divergent genetic lineages within two rare Eremophila (Scrophulariaceae: Myoporeae) species in a biodiversity hotspot: implications for taxonomy and conservation

Effective conservation management should target appropriate conservation units, but evolutionarily and genetically divergent lineages within nominal taxa are often unrecognized. The south‐western Australian biodiversity hotspot may harbour many cryptic taxa, as it contains many plant species with naturally fragmented population distributions. Using microsatellite markers, we tested the hypothesis that disjunct population groups in the rare species Eremophila microtheca and E. rostrata (Scrophulariaceae: Myoporeae) are highly genetically divergent and represent separate evolutionarily significant units (ESUs). Chromosome counts indicated that all individuals assessed were diploid (2n = 36). Genetic differentiation among disjunct population groups was highly significant (P < 0.001) for both E. microtheca (F_ST = 0.301–0.383; D_est = 0.756–0.774) and E. rostrata (F_ST = 0.325–0.346; D_est = 0.628–0.660), and was similar to their differentiation from allied species. These results, including high incidences of private alleles, suggest historical divergence among cryptic taxa within E. microtheca and E. rostrata. Population groups in E. rostrata have recently been taxonomically recognized as two subspecies. Our study suggests that E. microtheca should also be reassessed as two taxa or considered as two ESUs, and the southern occurrence should be listed as Critically Endangered. We suggest a precautionary approach for flora in this and similar landscapes, whereby historically wide geographical disjunctions are assumed to indicate separate units for conservation. © 2014 State of Western Australia. Botanical Journal of the Linnean Society © 2014 The Linnean Society of London, 2015, 177 , 96–111.     

New insights into tateid gastropods and their radiation on Fiji based on anatomical and molecular methods (Caenogastropoda: Truncatelloidea)

The South Pacific archipelago of Fiji is characterized by a predominantly Indo‐Malesian flora and fauna. We provide a first systematic study on Fiji's tateid gastropods – previously classified as Hydrobiidae – describing 18 new species, combining morphological, anatomical, and molecular data. The molecular phylogeny of tateid gastropods based on 16S rRNA and cytochrome c oxidase subunit I (COI) showed that the species from Fiji were closer related to New Zealand than to Australian or New Caledonian taxa, which is rather exceptional. Performing an ancestral range reconstruction we inferred the colonization history across the two main islands. The radiation had its origin in southern Viti Levu, with a subsequent dispersal over the western and central parts of the island. The chronology of the radiation over eastern Viti Levu and Vanua Levu remained unresolved because of incomplete lineage sorting, a phenomenon typical for young radiations. © 2014 The Linnean Society of London     

IUCN Red List assessment of the Cape Verde endemic flora: towards a global strategy for plant conservation in Macaronesia

We review the conservation status and threats to the endemic vascular flora of the Cape Verde islands, mostly based on the past two decades of collecting, literature review and herbarium specimens. The application of IUCN Red List criteria and categories using RAMAS software reveals that 78% of the endemic plants are threatened (29.3% Critically Endangered, 41.3% Endangered, 7.6% Vulnerable). Most of these endemics have a limited geographical range, and half of them have Areas of Occupancy and Extents of Occurrence of < 20 and 200 km², respectively. Our data show that, over the last two decades, the Cape Verde vascular plants have become more threatened and their conservation status has declined, mostly as a consequence of the increase in exotic species, habitat degradation and human disturbance. This paper presents the first comprehensive IUCN Red List data review for the plants endemic to Cape Verde, thus providing an important step towards the recognition and conservation of its threatened endemic flora at the national and global level. It also fills a knowledge gap, as it represents the first thorough assessment of the conservation status of the entire endemic flora of a Macaronesian archipelago.     

Applying red lists to the evaluation of agricultural habitat: regular occurrence of threatened birds,vascular plants,and bryophytes in field margins of Poland

Using the assessments of conservation status of flora and fauna, we discuss declining species in semi-natural field margins and stress the importance of these vanishing habitats. Seventy field margins in the diverse farmland of SW Poland were investigated with regard to their vascular plants, bryophytes and breeding birds. We checked the occurrence of threatened and conservation concern species, i.e. those listed in local, national or European threatened species lists, and birds with an unfavorable conservation status in Europe. Of a total of 673 species, 18 classified as threatened were recorded: 12 vascular plants (2.2 % of the total number of species), five bryophytes (5.6 %), and one bird species (2.0 %). Threatened plants occurred in 18.6 % of study plots, bryophytes in 20.0 % and birds in 12.9 %. Eleven bird species, noted in 95.7 % of study plots, had an unfavorable conservation status in Europe. Increasing volumes of trees and shrubs significantly increased the overall richness in each taxa. In percentage terms the occurrence of focal species in all three taxa tended to be higher in shrubby than in herbaceous and tree-lined margins. Our data demonstrate that field margins in Central European arable farmland regularly support rare and threatened species, and therefore deserve greater conservation efforts. Red lists along with alternative listing approaches can be employed to evaluate the biodiversity of fine-scale habitats, but their applicability depends on the taxonomic group and geographical scale of the lists, reflecting different conservation priorities.     

The non-native vascular flora of the Falkland Islands

Summary

Non-native species form a significant, but under-recorded, component of the Falkland Islands vascular flora. With this in mind a comprehensive re vie w of the non-native flora of the Falkland Islands was undertaken for the first time since the publication of the definitive Flora in 1968. We have recorded 175 non-native taxa, from 46 families, from the Falkland Islands which are listed with accompanying notes on habitat, status and distribution. Twenty-nine of these are likely to be commonly encountered, though only Aira praecox, Cerastium fontanum, Rumex acetosella and Sagina procumbens are near ubiquitous throughout. The origins of much of the non-native flora are obscure, however most species seem to be of European descent, and a significant proportion of taxa seem to have become established after introductions for agricultural and horticultural purposes.     

A new hexaploid species of Centaurea section Acrolophus (Asteraceae) from Evvia Island,Greece

Centaurea carystea Trigas & Constantin., a new yellow‐flowered species of Centaurea from Mt. Ochi on Evvia Island (Greece), is described and illustrated. It is a member of the polymorphic C. section Acrolophus and allied to taxa of the C. attica aggregate, C. pelia and C. mantoudii. The new species appears to be a local and threatened endemic, with the total number of individuals known being less than 500. A karyological examination revealed that it is hexaploid, with 2n = 6x = 54, an unusual number in Centaurea, which may indicate a hybrid origin. To further clarify the taxonomic position of C. carystea , we used random amplification of polymorphic DNA markers of 25 plants belonging to nine species, subspecies and varieties morphologically related to the new species, together with two reference taxa. Clustering using the unweighted pair group method with arithmetic mean indicated a discrete position for C. carystea , close to but distinct from the yellow‐flowered C. mantoudii. © 2008 The Linnean Society of London, Botanical Journal of the Linnean Society, 2008, 158 , 762–774.     

The Rubiaceae of São Tomé e Príncipe (Gulf of Guinea): taxonomy and conservation

A synoptic treatment of the Rubiaceae of São Tomé e Príncipe (Gulf of Guinea) is presented based on herbarium collections kept at BM, COI, K and LISC. There are 36 genera and 64 species of Rubiaceae represented in the flora of São Tomé e Príncipe. Identification keys are provided for genera, species and infraspecific taxa. A new combination is made in Chassalia . Twenty-nine taxa are endemic to these islands, two of which are also endemic to Annobon. The conservation status of the endemic taxa is assessed and IUCN categories of threat are proposed for ten taxa. Nineteen taxa of Rubiaceae are considered under threat in São Tomé e Príncipe and ten are considered nearly threatened.  © 2005 The Linnean Society of London, Botanical Journal of the Linnean Society , 2005, 149 , 85–114.     

Relict conifers from the mid-Pleistocene of Rhodes,Greece

The mid-Pleistocene Kolymbia Flora of Rhodes, Greece occurs in the Lindos Bay Clay facies group of the Rhodes Formation and was deposited in a marine setting at about a depth of 200 m. Recorded in the flora are the youngest presence of Glyptostrobus in the eastern Mediterranean, an extinct species of Pinus very similar to the modern relict Pinus canariensis, and a new species of the disjunct Cedrus. These taxa indicate that some relict plant taxa existed on Rhodes later than previously recognised. The late presence of Taxodiaceae in the eastern Mediterranean may demerit its usefulness for determining the Pliocene–Pleistocene boundary. The finding of Liquidambar, Zelkova and Fagus in the flora supports the idea of Rhodes, and possibly the eastern Mediterranean, as a refugium during the mid-Pleistocene. Similar fossil assemblages should be found in adjacent Turkey because the Lindos Bay Clay records an extensive marine transgression probably resulting from graben tectonics that lead to the ultimate separation of Rhodes from mainland Turkey.     

The narrow endemic Scrophularia valdesii Ortega-Olivencia & Devesa (Scrophulariaceae) in the Iberian Peninsula: an evaluation of its conservation status

The aim of this study is to determine the conservation status of Scrophularia valdesii Ortega-Olivencia & Devesa, a threatened narrow endemism of the Duero Basin (central-western Spain and north-eastern Portugal, Lusitan Duriensean biogeographical sector), by using the IUCN (2001) IUCN Red List Categories and Criteria: version 3.1. IUCN Species Survival Commision. IUCN, Gland, Switzerland and Cambridge, UK. The species is listed as threatened in several Spanish compilatory works on threatened flora, such as `The Spanish Red List of Vascular Flora' and the `Atlas and Red Book of Threatened Vascular Flora of Spain', although it does not figure as such in any Portuguese document. Here we report detailed studies of its distribution, and assess its current conservation status with respect to this, the sizes of its populations, and the threats it faces. Our estimation of the size of the Iberian populations was based on our own census data from those sites at which we found the species. All censuses were performed by direct counting of all potentially reproductive individuals. Fourteen populations were found, and the total members thought to exist are 161, with a highly fragmented distribution on the Spanish–Portuguese border along the valley of the River Duero. Exhaustive bibliographical and field surveys were carried out and herbarium specimens housed in several herbaria were revised in order to determine the Extent of Occurrence and the Area of Occupancy. Based on our data, the species is classifiable as Critically Endangered and Endangered in Portugal and Spain, respectively. The risk of local population extinction is high due to its typically small local population sizes and suitable conservation strategies should be developed in order to preserve the species.     

Research into Plant Invasions in a Crossroads Region: History and Focus

The Czech Republic is a central European country whose geographical location, natural conditions, history of human settlement, and present land-use management make it relatively prone to plant invasions, hence it represents a convenient model for their study. Research in plant invasions, which date to the late 19th century, is reviewed in the present paper. A long-term floristic tradition allowed for the accumulation of a large body of floristic data on alien plants. During the 1960s–1970s, the main research focus was on their distribution. In this period, attempts were also made to predict potential invasiveness of weeds of arable land. The success rate of this prediction was about 39%. Considerable effort was put into a detailed classification of human-accompanying plants and the terminology associated with the issue. There is a high level of taxonomic research conducted in the country, and the new Flora of the Czech Republic treats the immigration status of taxa with reasonable care and detail. A complete, serious catalogue of the alien plants of the country has been published recently: there are currently 1378 alien plants (33.4% of the total flora). The core of present research in plant invasions is in ecological, biological, and biogeographical studies, focussed on (i) the history of invasion of particular species since their introduction, (ii) the role and importance of alien species in vegetation, including their participation in succession, and (iii) the major invasive species of the Czech flora and comparison of congeners. Reynoutria spp., Heracleum mantegazzianum, Oenothera spp., Pinus strobus, and Bidens frondosa are among the taxa most intensively studied in recent time. A complete list of 69 invasive plants in the Czech flora introduced after the year 1500 [following the definition of Richardson et al. (2000a) Diversity and Distributions 6: 93–107] is given. The available legal instruments relevant to the issue are reviewed. This revised version was published online in July 2006 with corrections to the Cover Date.     

A preliminary assessment of the conservation status of Cypripedium species in the wild

The conservation of few plants produces such an emotive response as that of hardy slipper orchids of the genus Cypripedium. The genus, comprising 45 species and two varieties, is holarctic in distribution with the centre of diversity in China. Much is known about the status of some species and their populations in Europe and North America, but little information is available on the Asiatic and Mexican species. Most cypripediums are showy orchids and are well represented in herbaria, allowing an estimate of the present distribution, frequency and conservation status of the known species to be made. The authors conclude that having considered the number of herbarium specimens, nearly half of the genus may be considered threatened and in need of some legal protection if the plants are to survive in the wild. They identify a need to examine the conservation status of the taxa in in this genus more closely, and outline two important conservation tools that may help efforts to this end: the IUCN Red List Categories and Criteria for the Amendment of the Appendices of CITES (Convention on International Trade in Endangered Species of Wild Fauna and Flora).     

The orchids of Timor: checklist and conservation status

A checklist of the Orchidaceae of Timor is presented, with emphasis on the eastern half of the island (East Timor), based on historical herbarium collections and recent botanical explorations. This list comprises 38 genera with 66 species, including 15 new genera and 32 new species records for this island. Moreover, four new species are described: Bulbophyllum sundaicum , Habenaria ankylocentron , Habenaria cauda‐porcelli , and Pterostylis timorensis . Of these, we consider the finding of a new species of Pterostylis to be especially noteworthy, because this species seems to be more closely related to certain Australian members of the genus than to the Malesian ones, suggesting earlier contacts of Timor with Australia. Four new synonyms are proposed: Calanthe veratrifolia var. timorensis J.J.Sm. (C. triplicata), Habenaria cornuta Span. (H. giriensis), H. grandis Benth. ex Ridl. (Peristylus goodyeroides), and H. mutica Span. (H. elongata). The best represented genus is Habenaria, with 13 species, followed by Dendrobium with four, and Bulbophyllum with three. Because of insufficient or sterile material, it was not possible to identify, or describe as new, 20 different taxa. The conservation status of the ten endemic species, plus six possible new undescribed species and two non‐endemic, but threatened, species, was assessed using the World Conservation Union (IUCN) criteria, and categories of threat were proposed. Seven endemic species are considered to be Critically Endangered and two Endangered. One of the nonendemic species is considered to be Critically Endangered, and the other Endangered. The survival of some of these species might be less insecure if an effective application of Regulation project N.2000/19 on protected areas (UNTAET/REG/2000/19) was implemented and maintained, because most of these species were collected in areas considered for protection under this Regulation. Further studies are required, however, in order to complete our knowledge of the diversity and population dynamics of this interesting part of Timor's biodiversity. © 2008 The Linnean Society of London, Botanical Journal of the Linnean Society, 2008, 157 , 197–215.     

基于植物区系的雷州半岛天然林群落树种特征研究

传统涉及植物区系和重要值的研究思路通常先分析该地区的植物区系组成,然后再分析该区域某个区系中某个优势种的重要值。该种思路存在未能完全同时反映不同区系不同植物物种参与群落构建和其在群落中的地位等缺陷。为了解决上述问题,构建物种群落指数,以雷州半岛天然季雨林的木本植物为对象开展研究。基于雷州半岛8个区域的80个20 m×20 m固定样地的实测数据,通过植物区系+重要值的方式构建物种群落指数开展研究。(1)湛江云脚村群落、湛江湖光岩、雷州鹰峰岭、雷州足荣村、徐闻双洋村、廉江高桥和廉江谢鞋山皆以热带区系分布为主导,数值皆大于0.8以上。廉江根竹嶂地理位置特殊,以9区系东亚和北美洲间断分布为主,数值接近0.5。(2)第2区系树种在雷州半岛群落树种组成和构建中处于优势地位,最高值为0.4261,朴树和鹅掌柴为优势种;第3区系树种和第6区系树种处于劣势地位;第4区系树种处于优势地位,最高值为0.3339,橄榄为优势种;第5区系树种处于优势地位,最高为0.3787,阴香和樟树为优势种;第7区系树种在雷州半岛地区群落内分布较为均衡,普遍适应各个样地。本研究表明,雷州半岛地区带有明显的热带性区系特征;物种群落指数能够较好的体现雷州半岛样地各个区系树种在植物群落组成的特征。