Avian Composition Co‐varies with Floristic Composition and Soil Nutrient Concentration in Amazonian Upland Forests

Spatial heterogeneity in the plant species composition of tropical forests is expected to influence animal species abundance and composition because vegetation constitutes the primary habitat feature for forest animals. Floristic variation is tied to variation in soils, so edaphic properties should ultimately influence animal species composition as well. The study of covariation in floristic and faunistic turnover has been hindered by the difficulty of completing coordinated surveys in hyperdiverse tropical communities, but this can be overcome with the use of a few plant taxa that function as surrogates for general floristic turnover. We used avian and plant transect surveys and soil sampling in a western Amazonian upland (terra firme) forest landscape to test whether spatial variation in bird community composition is associated with floristic turnover and corresponding edaphic gradients. Partial Mantel tests and Non‐metric Multidimensional Scaling showed floristic distinctiveness between two forest types closely associated with differences in soil cation concentrations, and differences in both floristic composition and cation concentrations were further linked to compositional differences in avian species, independent of geographic distances among sites. Ten percent of bird species included in Indicator Species Analyses showed significant associations with one of the two forest types. The upland forest types that we sampled, each corresponding to a different geological formation, are intermediate relative to edaphically extreme environments in the region. Models of avian diversification should take into account this environmental heterogeneity, as should conservation planning approaches that aim to represent faunal diversity. Abstract in Spanish is available in the online version of this article.     

Beta diversity as the variance of community data: dissimilarity coefficients and partitioning

Beta diversity can be measured in different ways. Among these, the total variance of the community data table Y can be used as an estimate of beta diversity. We show how the total variance of Y can be calculated either directly or through a dissimilarity matrix obtained using any dissimilarity index deemed appropriate for pairwise comparisons of community composition data. We addressed the question of which index to use by coding 16 indices using 14 properties that are necessary for beta assessment, comparability among data sets, sampling issues and ordination. Our comparison analysis classified the coefficients under study into five types, three of which are appropriate for beta diversity assessment. Our approach links the concept of beta diversity with the analysis of community data by commonly used methods like ordination and anova . Total beta can be partitioned into Species Contributions (SCBD: degree of variation of individual species across the study area) and Local Contributions (LCBD: comparative indicators of the ecological uniqueness of the sites) to Beta Diversity. Moreover, total beta can be broken up into within‐ and among‐group components by manova , into orthogonal axes by ordination, into spatial scales by eigenfunction analysis or among explanatory data sets by variation partitioning.     

Conservation of genetic diversity in the endangered plant Eriogonum ovalifolium var. vineum (Polygonaceae)

The purpose of his research was to describethe organization of genetic variation in thefederally endangered plant taxon Eriogonumovalifolium var. vineum using allozymes. Such information can help prioritize sites andmanagement choices for capturing andmaintaining genetic variation and can reducethe number of populations necessary to committo conservation, thus reducing costs andconflicts with competing land uses. Information on genetic diversity patterns alsoprovides insight into evolutionary anddemographic history of a taxon which canprovide means to assess future risk of erosionof diversity. Similar to other Eriogonumovalifolium varieties, E. ovalifoliumvar. vineum is diverse atboth the taxon (proportion of polymorphic loci[P] = 0.55 and alleles per locus [A] =5.45 [SD = 2.5]) and population (P = 0.56 [SD =0.11] and A = 2.68 [SD = 0.35]) levels. Gene diversity (H _e) withinpopulations averaged 0.19 (SD = 0.03). Wefound some evidence for limited clonalreproduction within populations. Populationswere moderately differentiated from one another(_S = 0.14) and showed moderatedeviations from Hardy-Weinberg equilibriumwithin populations (f = 0.14 and F =0.19). Mean Nei's genetic distance (D)among all pairs of populations was 0.02. Populations with high levels of multiplemeasures of genetic diversity, high levels ofdifferentiation, and low levels of apparentinbreeding are suggested as conservationpriorities.     

海南岛霸王岭热带低地雨林树木的空间格局

树木空间格局及其形成过程是物种共存及生物多样性维持机制研究的一个重要方面。该文以海南岛两个1 hm ²的典型热带低地雨林老龄林森林动态样地为基础, 通过4个点格局模型(均质Poisson过程、异质Poisson过程、均质Thomas过程和异质Thomas过程)模拟扩散限制和生境异质性作用对树木空间分布格局的影响, 并分析不同空间尺度下(< 2 m, 2-5 m, 5-10 m, 10-15 m, 15-20 m和20-25 m)不同作用的相对重要性。结果表明: 热带低地雨林的所有树木总体上呈现聚集分布的空间格局, 随着尺度的增大, 聚集强度逐渐减小。树种在模拟空间分布格局最优模型中的比例由高到低分别是: 均质Thomas过程, 均质Poisson过程、异质Thomas过程和异质Poisson过程。扩散限制作用是形成热带低地雨林树木空间分布格局最重要的生态过程, 其次是完全随机作用以及生境异质性和扩散限制的联合作用, 而生境异质性的作用最小。不同空间尺度上模拟各树种空间分布格局的最优模型比例差异显著, 扩散限制作用能够在多数空间尺度上模拟多个树种的空间分布格局, 其次为随机作用; 生境异质性和扩散限制的联合作用主要在小尺度(0-5 m)影响树种分布, 而生境异质性在较大尺度(15-25 m)上影响树种的空间分布格局。     

How beta diversity and the underlying causes vary with sampling scales in the Changbai mountain forests

This study aims to establish a relationship between the sampling scale and tree species beta diversity temperate forests and to identify the underlying causes of beta diversity at different sampling scales. The data were obtained from three large observational study areas in the Changbai mountain region in northeastern China. All trees with a dbh ≥1 cm were stem‐mapped and measured. The beta diversity was calculated for four different grain sizes, and the associated variances were partitioned into components explained by environmental and spatial variables to determine the contributions of environmental filtering and dispersal limitation to beta diversity. The results showed that both beta diversity and the causes of beta diversity were dependent on the sampling scale. Beta diversity decreased with increasing scales. The best‐explained beta diversity variation was up to about 60% which was discovered in the secondary conifer and broad‐leaved mixed forest (CBF) study area at the 40 × 40 m scale. The variation partitioning result indicated that environmental filtering showed greater effects at bigger grain sizes, while dispersal limitation was found to be more important at smaller grain sizes. What is more, the result showed an increasing explanatory ability of environmental effects with increasing sampling grains but no clearly trend of spatial effects. The study emphasized that the underlying causes of beta diversity variation may be quite different within the same region depending on varying sampling scales. Therefore, scale effects should be taken into account in future studies on beta diversity, which is critical in identifying different relative importance of spatial and environmental drivers on species composition variation.     

地理距离和环境因子对阿拉善戈壁植物群落β多样性的影响

内蒙古阿拉善地区分布着超过20万km²的典型戈壁生态系统, 且这些戈壁生态系统正遭受着持续性气候变暖与极端天气的影响。然而, 土壤、气候、空间变量等因子对阿拉善戈壁大尺度植物β多样性及其关键组分的相对影响还没有得到系统研究。本文通过对阿拉善典型戈壁生境的276个样方进行植物群落组成调查, 并结合气候、土壤等数据, 探讨了地理距离和环境因子对阿拉善戈壁区植物群落β多样性及其组分的影响。研究表明: (1)在阿拉善戈壁区, 随着地理距离的增加, 植物群落β多样性及物种周转组分显著增加, 而且β多样性主要源于物种周转组分, 物种嵌套组分的贡献非常有限; (2)偏Mantel分析显示环境因子和地理距离对β多样性及其物种周转组分均有显著的单独作用; 方差分解结果进一步表明, 环境因子和地理距离共同解释了植物β多样性及其物种周转组分10.84%-17.67% (Bray-Curtis)和15.47%-24.81% (Sørensen)的变异, 但环境因子可以单独解释更多的变异(6.62%-9.97% (Bray-Curtis)和8.98%-14.51% (Sørensen))。在众多环境因子中, 气温日较差、土壤含水量和地表砾石盖度对植物群落β多样性和物种周转组分的贡献更大。以上结果表明, 环境过滤、扩散限制以及其他未知过程可能共同影响阿拉善戈壁区植物群落β多样性格局, 其中环境过滤可能具有更大的影响。     

Temporal and Spatial Diversity and Distribution of Arboreal Carabidae (Coleoptera) in a Western Amazonian Rain Forest1

Diversity of arboreal carabid beetles was sampled by fumigation in 100 3 × 3 m stations within a 100 × 1000 m terra firme forest plot in Ecuadorian Amazonia. Nine sampling dates from January 1994 to October 1996 yielded 2329 individuals belonging to 318 species of which more than 50 percent were undescribed species. A high percentage of the species sampled were rare; the proportion that occurred once per sampling date (singletons) ranged from 50.0 to 62.5 percent. Estimates of species richness were from 82 to 282 species of arboreal carabids in the study plot on a given sampling date. Most richness values were greater than 173 species. Species accumulation curves attained asymptotes for all but one sampling date, indicating that an adequate level of sampling effort was used to characterize the diversity of carabid fauna. Total accumulation curves based on pooled data failed to reach asymptotes. There was a high turnover in species composition between sampling dates; less than 50 percent of the species between the majority of sampling dates were shared, suggesting that the total species pool may be extremely large. Although species composition changed seasonally, species richness varied little. Spatial autocorrelation analysis revealed that the structure of this species assemblage was significantly patterned at distances below 280 m. Taken together, the large percentage of undescribed species, die failure of the overall species accumulation curves to level off, and the high turnover in species composition indicate that the species diversity of carabid beetles is far higher than previously thought.     

地理距离及环境差异对云南元江干热河谷植物群落beta多样性的影响

beta多样性反映了群落间物种组成的差异, 是生物多样性研究的热点之一。本研究通过对云南元江干热河谷41个植物群落样方进行调查, 用Jaccard相异系数表征物种beta多样性, 用样方之间的最近谱系距离(mean nearest taxon distance, MNTD)及平均谱系距离(mean pairwise distance, MPD)表征谱系beta多样性, 采用基于距离矩阵的多元回归和方差分解方法, 探讨了该区域干热河谷典型植物群落的物种beta多样性和谱系beta多样性与样方间环境差异(主要是气候)及地理距离之间的关系。结果表明: (1)群落间的地理距离和年平均温度差异对干热河谷植物群落的物种beta多样性和谱系beta多样性有显著影响; (2)地理距离对物种beta多样性和MNTD的影响最大; 地理距离和年平均温度差异对MPD的影响均较大; (3)样方间年平均温度与年平均降水量的差异和地理距离能够解释群落间beta多样性及谱系beta多样性11-13%的变异。以上结果表明, 生态位分化和扩散限制对该地区植物群落的beta多样性均有显著影响, 其中扩散限制的影响可能更大。此外, 人类活动等其他因素也很可能对元江干热河谷的群落组成具有非常重要的影响。     

Patterns of ferns community assemblages in some Malaysian and Nigerian tropical forests

Research on fern ecology has gained attention in the last decade, yet there is a paucity of information on the comparison of ferns communities across continents. This study focused on comparing the ferns community assemblages in some tropical forests of Malaysia and Nigeria, thereby assessing the patterns of species richness (SR) and phylogenetic diversity (PD) in relation to the bioclimatic drivers across the continents. The diversity and taxonomic compositions of ferns were assessed using 180 plots of 10 m × 10 m in each country. The species richness and other diversity indices were determined using the combined forests data for each country and for the individual forests. Also, the phylogenetic diversity of the ferns was assessed using the genus‐based molecular sequences downloaded from the GeneBank. The patterns of the ferns SR and PD in the two countries as driven by some bioclimatic factors were evaluated using the regression analysis. The observed and rarefied–extrapolated fern species richness is significantly higher in Malaysian forests than in Nigerian forests. Also, the other diversity indices are significantly higher in Malaysian forests except for the Shannon index which showed no significant difference between the two biogeographic regions. There is a very low similarity (7.41%) in the taxonomic composition of ferns between the two biogeographic areas, although the similarity in composition increased with increasing taxonomic levels (species: 7.41%, genus: 12.77%, family: 70.96%). Terrestrial and epiphytic ferns are more dominant than the other life forms in the two countries. The precipitation variables drive the phylogenetic structure of ferns in Nigeria, whereas both precipitation and temperature variables drive the phylogenetic structure of ferns in Malaysia. This indicates that ferns assemblages in Nigeria and Malaysia are driven by both climatic variables. Besides, we also hypothesize that these observed differences could be due to other historical and evolutionary processes.     

Size of sampling unit strongly influences detection of seedling limitation in a wet tropical forest

Seedling limitation could structure communities, but often is evaluated with sampling units that are orders of magnitude smaller than mature plants. We censused seedlings for 5.5 years in five 1 × 200-m transects in a wet Neotropical forest. For 106 common species (≥ 10 seedlings in a transect), we calculated prevalence (occurrence of ≥ 1 newly emerged seedlings per sampling unit) at 1 m² and at 1 m × mature crown diameter units by aggregating adjacent quadrats. For most species, prevalence was 2–25% at 1 m², but 20–92% at mature crown scales. Increased prevalence arose from broadly distributed seedlings within transects, with unoccupied segments generally shorter than crown diameters. At the landscape scale, 69% of 301 species were locally rare (< 10 seedlings) and only 16% were represented in all transects (maximally separated by 2.4 km). Nonetheless, for more common species, much lower estimates of seedling limitation at mature crown scales suggest weaker influence of seedling limitation on community dynamics than previously assumed.