Sex-diagnosis of isolated Os coxae by discriminant functions

After methodical preparatory work on the selection of the metric characters and their technical definition, 16 variables were measured on every right hip bone in our standard series (Weisbach series). The discriminant functions performed on our standard series proved to be very sharply discriminant. The methodical foundation gained from the Weisbach series was applied to a control series (Tyrol series), whose sex had not been determined. The application of the discriminant analyses enabled a complete and plausible sex diagnosis to be made.     

Early classification of multivariate temporal observations by extraction of interpretable shapelets

ABSTRACT: BACKGROUND: Early classification of time series is beneficial for biomedical informatics problems suchincluding, but not limited to, disease change detection. Early classification can be oftremendous help by identifying the onset of a disease before it has time to fully take hold. Inaddition, extracting patterns from the original time series helps domain experts to gaininsights into the classification results. This problem has been studied recently using timeseries segments called shapelets. In this paper, we present a method, which we callMultivariate Shapelets Detection (MSD), that allows for early and patient-specificclassification of multivariate time series. The method extracts time series patterns, calledmultivariate shapelets, from all dimensions of the time series that distinctly manifest thetarget class locally. The time series were classified by searching for the earliest closestpatterns. RESULTS: The proposed early classification method for multivariate time series has been evaluated oneight gene expression datasets from viral infection and drug response studies in humans. Inour experiments, the MSD method outperformed the baseline methods, achieving highlyaccurate classification by using as little as 40%-64% of the time series. The obtained resultsprovide evidence that using conventional classification methods on short time series is notas accurate as using the proposed methods specialized for early classification. CONCLUSION: For the early classification task, we proposed a method called Multivariate ShapeletsDetection (MSD), which extracts patterns from all dimensions of the time series. Weshowed that the MSD method can classify the time series early by using as little as40%-64% of the time series' length.     

Synthesis and in vitro antitumor activity of asperphenamate derivatives as autophagy inducer

In an effort to improve the aqueous solubility and the antitumor activity of natural product asperphenamate, we have designed and synthesized three series of asperphenamate derivatives, including series I (simplifying molecular skeleton series), series II (introducing a hydroxyl group to A-phenyl ring series) and series III (disrupting molecular planarity series). All derivatives have displayed a significantly increased solubility compared with asperphenamate. Their growth inhibitory activities in vitro were screened by the standard MTT method in MCF-7, HeLa, and BEL-7402 cell lines. With the exception of the derivatives in series I, most of derivatives in series II and series III showed growth inhibitory activity. Among all derivatives, IM23b in series III showed the greatest potency in human breast cancer MCF-7 cells. The cellular potency of IM23b was approximately 1.5-fold more potent than that of cisplatin. The mechanism of cell death induced by IM23b in human breast cancer MCF-7 cells was further investigated. We concluded that the cell death was induced by autophagy instead of apoptosis or cell cycle arrest.     

Structure-affinity relationships of the affinity of 2-pyrazolyl adenosine analogues for the adenosine A2A receptor

The structure-affinity relationships of two novel 2-substituted adenosine series containing a substituted pyrazole attached at the N-1 or C-4 position for the adenosine (ADO) A2A receptor are described. Compounds in the 2-(N-1-pyrazolyl) adenosine series IV provided the highest affinity for the ADO A2A receptor as compared to the 2-(C-4-pyrazolyl) series V. The main structural differences between the two series point to the N-1 nitrogen of series IV imparting more favorable binding interactions with the receptor than those of series V.     

An optical determination of the series resistance in Loligo

The resistance in series with the membrane capacitance in the giant axon of the squid Loligo pealei was measured using potentiometric probes that exhibit absorbance changes proportional to the voltage across the plasma membrane proper. The method relies upon the fact that a voltage drop across the series resistance produces a deviation in the true transmembrane voltage from that imposed by a voltage clamp. Optical measurement of the true transmembrane potential, together with electrical measurement of the ionic current, permits the immediate determination of the series resistance by Ohm's law. An alternative method monitored the amount of electronic series resistance compensation required to force the optical signal to match the shape of the reference potential. The value of the series resistance measured in artificial seawater was 3.78 +/- 0.95 omega X cm2. The estimated value of the contribution of the Schwann cell layer to the series resistance was 2.57 +/- 0.89 omega X cm2.     

金叶银杏半同胞子代无性系的叶色和色素含量变化及呈色机制分析

对4月份至11月份金叶银杏‘万年金'( Ginkgo biloba ‘Wannianjin')32个半同胞子代无性系与亲本的叶色差异进行比较;比较了不同色系叶片的色素含量和比值及叶色参数(L*、a*和b*)的变化,分析了叶色参数与叶片色素含量的相关性;并观察了不同色系的叶绿体超微结构。结果表明：32个半同胞子代无性系可被分为金黄、浅黄、草绿和蓝绿4个色系。随时间推移,草绿和蓝绿色系叶片的总叶绿素( Chl)、叶绿素a( Chla)、叶绿素b( Chlb)和类胡萝卜素( Car)含量均呈“双峰型”变化趋势,Car/Chl和Car/Chla比值的变幅均较小;而金黄和浅黄色系叶片的上述色素含量呈“升高—降低—升高”变化趋势,Car/Chl和Car/Chla比值总体呈“迅速下降—相对稳定—缓慢升高”的变化趋势。各色系叶片的上述色素含量在夏季均不同程度下降,Car/Chlb比值变化差异较大,且金黄和浅黄色系的各色素含量均低于草绿和蓝绿色系。随时间推移,金黄和浅黄色系叶片的L*、a*和b*值以及草绿和蓝绿色系叶片的L*和b*值均先降低后升高,后2个色系的a*值则先升高后下降;并且,前2个色系的L*和b*值总体上显著高于后2个色系,而a*值则总体上低于后2个色系。金黄色系的Chla和Chl含量与L*和a*值显著负相关,而其Car/Chl和Car/Chla比值则与L*、a*和b*值显著或极显著正相关;浅黄色系的Chlb含量与a*值显著负相关,其Car/Chla比值与L*和b*值以及Car/Chlb比值与a*值均显著正相关;草绿色系的Chla含量与L*值显著负相关,其Car/Chla比值与L*和b*值以及Car/Chlb比值与a*值均显著正相关;这3个色系叶片的其余指标间以及蓝绿色系叶片的各指标间均无显著相关性。观察结果显示：金黄和浅黄色系的叶绿体基粒片层发育不健全,基粒片层可见但排列较疏松,且无明显垛叠,分布范围小而稀疏;蓝绿和草绿色系叶绿体的基粒类囊体垛叠层数均较多,基粒片层发达且排列紧致、整齐,分布范围大而稠密。综合分析结果表明：‘万年金'4个色系半同胞子代无性系叶片的呈色差异和叶色变化由多种因素控制,其中,Car/Chl和Car/Chla比值高且叶绿体基粒片层发育不健全是叶片呈黄色的主要原因。     

Computerized Interpretation of the Electron Ionization Mass Spectra of Nucleoside TMS Derivatives

Abstract

A computer program has been developed for the automated interpretation of mass spectra of TMS derivatives of nucleosides found in human urine. The m/z values in the unknown spectrum are compared to m/z values of 3 different ion series commonly observed in the mass spectra of nucleoside TMS derivatives.¹ If a correlation exists, the unknown spectra are marked with color according to the scheme: 1) blue—molecular ion series, 2) red—base ion series and 3) yellow—sugar ion series. The program suggests a structural assignment for each of the marked ions and calculates a series related ion current. The calculated ion current is used to assign the of sugar contained in the unknown nucleoside.     

Discovery of a novel series of quinoxalines as inhibitors of c-Met kinase

A series of quinoxaline inhibitors of c-Met kinase is described. The postulated binding mode was confirmed by an X-ray crystal structure and optimisation of the series was performed on the basis of this structure. Future directions for development of the series are discussed together with the identification of a novel quinoline scaffold.     

Fractal dimension of birds population sizes time series

Information about fractal dimension is collected so that it can be applied to time series interpreting Hurst coefficient. The population size of a species is modelled as a dynamic system. The Hurst coefficient is calculated for these times series. A computer programme has been elaborated to compute the Hurst exponent of time series using the algorithms of range increment, second order moment increment and local second order moment increment. It has been applied to time series of birds' populations.     

A Robust Measurement of Correlation in Dependent Time Series

A special problem in behavioral sciences are time series where the data points of one series are dependent on the just prior values of the other series. The data structure may additionally exhibit an interdependence between the variables that changes over time. Pfanzagl's T provides a robust test of trend independence between such data sets. At the same time the applicability of Pearson's r can be extended by using the statistical considerations for T. For this purpose, the time series are transformed into binary series, consisting either of the values 1 or 0. These series may show distinct trend patterns of consecutive data points with the value 1 or with the value 0. Data points belonging to the same trend pattern are regarded as cohering values for any further mathematical operation applied. Based on the trend identifcation the T-value is derived, providing information on the coherent development of trend patterns in the two series. Additionally Pearson's r together with a modified sampling theory offers a standard measure of linear association between the time series. The procedures are described and a computer program is provided, combining Pfanzagl's T and Pearson's r with a bootstrap procedure for the statistical evaluation of the correlation coefficients.     

A Subsequent Fit of Time Series and Amplitude Histogram of Patch-Clamp Records Reveals Rate Constants up to 1 per Microsecond

Fast gating in time series of patch-clamp current demands powerful tools to reveal the rate constants of the adequate Hidden Markov model. Here, two approaches are presented to improve the temporal resolution of the direct fit of the time series. First, the prediction algorithm is extended to include intermediate currents between the nominal levels as caused by the anti-aliasing filter. This approach can reveal rate constants that are about 4 times higher than the corner frequency of the anti-aliasing filter. However, this approach is restricted to time series with very low noise. Second, the direct fit of the time series is combined with a beta fit, i.e., a fit of the deviations of the amplitude histogram from the Gaussian distribution. Since the “theoretical” amplitude histograms for higher-order Bessel filters cannot be calculated by analytical tools, they are generated from simulated time series. In a first approach, a simultaneous fit of the time series and of the Beta fit is tested. This simultaneous fit, however, inherits the drawbacks of both approaches, not the benefits. More successful is a subsequent fit: The fit of the time series yields a set of rate constants. The subsequent Beta fit uses the slow rate constants of the fit of the time series as fixed parameters and the optimization algorithm is restricted to the fast ones. The efficiency of this approach is illustrated by means of time series obtained from simulation and from the dominant K⁺ channel in Chara. This shows that temporal resolution can reach the microsecond range.     

Investigation of the significance of correlation of fish electrical activity and electrotelluric field

The data of digital measurements of electrical activity of weakly electric fish and electrotelluric field were studied. The duration of the time series was 4 years. The identity of the spectral composition of the series analyzed and a rather strong correlation between them were found. The evaluation of significance of the correlation was made by a number of pairs of data values and by comparison of the correlation coefficients between the initial series with corresponding correlation coefficients between the same series after the following operations with them: 1) ranging; 2) filtration of trends; 3) filtration of the seasonal component; 4) division into sections. All tests and the identity of the compared series spectra convincingly confirmed the validity of the working hypothesis on probable existence of physically stipulated causal relations between the processes considered. However, numerical model experiments considering the flicker-noise character of the series demonstrated no less convincingly that the rather high correlation coefficient may be explained by the alternative hypothesis on the independence of the processes analyzed. Since the very wide range of different natural processes has a flicker-noise structure, the methodological significance of the results obtained is far beyond the limits of the specific problem of the present paper.     

中国温带阔叶红松林不同演替系列土壤有机碳矿化特征

土壤有机碳矿化与陆地生态系统碳循环和全球气候变化关系密切,为准确评估中国温带小兴安岭阔叶红松林不同演替系列土壤有机碳矿化特征及变化规律。以年代序列法代替群落次生演替过程,采用室内恒温培养(碱液吸收法)测定阔叶红松林不同演替系列(中生演替系列、湿生演替系列、旱生演替系列)6种群落类型土壤有机碳矿化量和矿化速率。3个演替系列土壤有机碳含量均表现出一致的剖面变化特征,随着土层深度的加深有机碳矿化量逐渐降少。且不同演替系列土层间有机碳矿化量不同,中生演替系列原始阔叶红松林土壤有机碳累计矿化量最大,其次为旱生演替系列,湿生演替系列最小。3个演替系列土壤有机碳矿化速率随时间变化呈现基本一致的趋势,即培养前期快速下降、后期逐渐趋于平稳。3个演替系列6种群落类型土壤有机碳矿化差异显著,表现为原始阔叶红松林白桦次生林云冷杉红松林红松枫桦次生林蒙古栎红松林蒙古栎、黑桦次生林。阔叶红松林不同演替系列土壤有机矿化采用非线性指数拟合效果较好。阔叶红松林不同演替系列土壤有机碳矿化与土壤全氮、凋落物量显著正相关,与土壤含水率、容重、土壤酸碱度显著负相关。不同演替系列群落的演替历史、土壤质地和养分状况等生态因子是导致阔叶红松林不同演替系列土壤有机碳矿化差异的原因。     

Synthesis and biological evaluation of substituted pyrazoles as blockers of divalent metal transporter 1 (DMT1)

Three distinct series of substituted pyrazole blockers of divalent metal transporter 1 (DMT1) were elaborated from the high-throughput screening pyrazolone hit 1. Preliminary hit-to-lead efforts revealed a preference for electron-withdrawing substituents in the 4-amido-5-hydroxypyrazole series 6a-l. In turn, this preference was more pronounced in a series of 4-aryl-5-hydroxypyrazoles 8a-j. The representative analogs 6f and 12f were found to be efficacious in a rodent model of acute iron hyperabsorption. These three series represent promising starting points for lead optimization efforts aimed at the discovery of DMT1 blockers as iron overload therapeutics.     

Human assessment of time intervals depending on the manner of their representation

On 42 subject three experimental series were carried out: in the first (12 persons) and second (24 persons) series the presented interval was limited by two short clicks, in the third series (6 persons)--by electrocutaneous stimuli. Duration of the stimuli was 1 ms. There were three regimes of work in the first and third series: the intervals successively increased from 100 to 500 ms with a step of 100 ms (1), decreased from 5000 to 100 ms (2) or varied in a random order (3). In the second series only the regime 3 was applied. In all series the method of temporal intervals reproduction was used. The means of the reproduction varied: in the second and third series the interval was reproduced by button pressing according to the presented duration: in the first series the end of the interval was marked by a short button push, and the beginning was the moment of the second stimulus presentation. With the first means a considerable overreproduction was observed of the presented duration at all intervals and all regimes. At the second and third series a phasic character of the reproduction duration was noted: up to 1000 ms the interval mostly was overestimated, over 2000 ms--it was significantly underestimated. It is suggested that as the estimation of the temporal interval implies some motor reaction, the afferent flow of signals from the active muscles can change the value of the reproduced duration. In the first series, the subjects probably do not take into account the time necessary for the realized signal perception.     

乙型、丙型流感病毒的长记忆ARFIMA模型

用时间序列模型来分析乙型、丙型这两种流感病毒,对乙流、丙流病毒DNA序列提供了一种新的时间序列模型,即CGR弧度序列。利用CGR坐标将乙流、丙流病毒DNA序列转换成CGR弧度序列,且引入长记忆ARFIMA模型去拟合这两类序列。发现随机找来的10条乙流序列,10条丙流序列都具有长相关性且拟合很好,并且还发现这两种病毒序列可以尝试用不同的ARFIMA模型ARFIMA(0,d,4)模型,ARFIMA(1,d,1)模型去识别。     

Bactericidal activity of magainin 2: use of lipopolysaccharide mutants

Salmonella typhimurium and a series of rough lipopolysaccharide mutants derived from it were used as target bacteria to examine the antimicrobial capacity of magainin 2. Magainin 2 demonstrated a dose-related bactericidal activity against the smooth parent strain and the series of lipopolysaccharide mutants. The lipopolysaccharide mutant series showed an ordered increase in sensitivity to the magainin 2 as the depth of the rough lesion in the lipopolysaccharide increased.     

Aspects of risk-aversion in foraging white-crowned sparrows

Two series of aviary experiments with white-crowned sparrows (Zonotrichia leucophrys) are reported. The first series attempts to mimic foraging choices between microhabitats. The second series examines foraging choices made within a single artificial patch, a design intended to resemble dietary selection. In all experiments subjects chose between a constant food reward and a variable reward, the mean of which equalled the constant reward. Each experiment allowed the bird to feed at an overall rate greater than that minimally required for daily energy balance. In both series of experiments, the birds usually preferred the constant reward. Results of the first series do not differ significantly from previously reported preferences of dark-eyed juncos (Junco hyemalis), birds weighing 10 g less than the white-crowned sparrows.     

杉木生长的起伏型时间序列模拟研究

起伏型时间序列法是一种新的时间序列分析法,本文介绍了起伏型时间序列林木模拟与预测方法,以杉木人工林生长为研究对象,对杉木胸径生长进行建模模拟,模拟工达到98．3％,结果令人满意,且比逐步回归法,多维时间序列分析法模拟效果更优,说明起伏型时间序列分析方法可应用于林木生长模拟与预测,从而丰富了林木生长预测与预报方法。