FISH AND FISHERIES OF WETLANDS

SUMMARY

The three major wetland types have characteristic fish communities. River-associated wetlands harbour a rich diversity of fishes which can either survive habitat desiccation during the dry-down, or migrate to and fro with the flood. Endorheic wetlands have a lower diversity of species which are typically ‘r’-selected relative to mainstream riverine or lacustrine forms. Marine wetlands have a variety of peripheral or marine forms, but are not discussed in this account. The dynamics of wetland fish communities are determined by periodically changing abiotic factors, especially water temperature and water level, and biotic factors, especially food availability. Water level fluctuations have several important functions and result in pulses of nutrient input and fish abundance. Wetland fish stocks can usually be sustained as long as the pristine flood regime is retained, but disruption of the flooding pattern interferes with fish breeding and nutrient flow. Fishing yields may be directly correlated with the flood history during the previous two years. Wetland fishes play an important role by converting the resource at the base of the food chain, i.e. living plants, detritus or epiphytes, into food for higher trophic levels. The need to identify and conserve key food supplies is emphasized. Wetland fisheries are relatively poorly developed in southern Africa with notable exceptions, e.g. Pongolo floodplain, Okavango swamp, Lake Liambezi, Elephant Marsh on the Shire River, but even in these systems the resource is probably underutilized.

The need to consider the socio-economic implications of upgrading a subsistence fishery are emphasized, and further study on the effect of water level fluctuations on major trophic pathways and on multispecies fisheries is encouraged. Because of the urgent need to manage wetland fisheries, various short-cut methods to obtain first-order estimates of fish production, yields and growth rates should be used until more data are available. The need to manage a floodplain holistically for both the aquatic and terrestrial phases is stressed. In addition, inocula (re-colonizing life history stages) should be conserved to accelerate the recovery of endorheic wetland fish stocks after a drought. As wetlands are of fundamental importance to lake or river metabolism and provide vital breeding and feeding areas for fishes, they should be given the highest conservation priority. Cost-benefit analyses should therefore be performed before any large scale manipulations of wetlands are performed.     

Increasing fish production from wetlands at Lake Victoria, Uganda using organically manured seasonal wetland fish ponds

The processes driving primary productivity and its impacts on fish production were investigated in field trials in eight seasonal earthen wetland ponds ‘Fingerponds’ (192 m²) in Uganda between 2003 and 2005. The ponds were stocked by the seasonal flood with predominantly Oreochromis spp. at densities ranging from 0.1 to 0.5 fish m⁻². Chicken manure (521, 833 or 1,563 kg ha⁻¹) was applied fortnightly. Results showed that primary productivity was enhanced with maximum average net primary productivity (±Standard Error) of 11.7 (±2.5) g O₂ m⁻² day⁻¹ at the Gaba site and 8.3 (±1.5) g O₂ m⁻² day⁻¹ at the Walukuba site. Net fish yields were higher in manured ponds with up to 2,670 kg ha⁻¹ yield for a 310 day growth period compared to less than 700 kg ha⁻¹ in unmanured ponds. Fish production was limited mainly by high recruitment, falling water levels, light limitation from high suspended solids and turbidity, and low zooplankton biomass. It was concluded that Fingerponds have a high potential for sustainable fish production and can contribute to the alleviation of protein shortages amongst the riparian communities around Lake Victoria. Production can be enhanced further with improved stock management.     

Aquatic ecosystem responses to fire and flood size in the Okavango Delta: observations from the seasonal floodplains

The frequency of fires in the Okavango Delta seasonal floodplains peaked at an intermediate frequency of flooding. Floodplains are commonly burnt every 3–5 years. This study showed fundamental changes in ecosystem properties due to burning. A burnt seasonal floodplain in the aquatic phase had oxygen levels well above saturation, 100–200%, while the levels in the un-burnt control site were below saturation and, at night, could decline to 10–40% saturation. The total phosphorous and total nitrogen concentrations were similar on both floodplains but considerably enriched relative to inflowing water, due to nutrient release from the flooded soil-sediment and animal droppings. Zooplankton biomass was very high in both systems although the abundance of fish fry was ten times higher on the un-burnt floodplain. In a low flood year the un-burnt floodplain water had high nutrient levels, primary production, methane emission, and subsequent uptake of methane in biota, as well as a high zooplankton biomass. The very high flood the following year showed the opposite with much lower production at all levels owing primarily to greater dilution of nutrients. The abundance of fish, however, was much higher during the high flood year. Macrophytes and litter provide direct shelter for fish fry but also promote low oxygen levels when decaying. Large flooded areas result in high fish production by removing obstacles related to congestion. This interplay between hydroperiod and fire may be crucial for the maintenance of high biological productivity both in the aquatic and terrestrial phases in a very nutrient poor wetland landscape. Understanding these interactions is crucial for optimal management.     

内蒙古高原典型草原区河漫滩湿地植物群落退化表征

草原区河流河漫滩草甸是生物多样性表现最充分和生物生产力最高的地段, 但由于过度放牧利用, 绝大部分草甸处于退化状态。该文以锡林河流域中游的河漫滩草甸为研究对象, 比较分析了围封保育湿地与放牧退化湿地的群落组成、地上生物量, 以及共有植物种的植株高度、节间长、叶长、叶宽, 土壤含水量、容重, 群落地下根量及根的分布, 土壤微生物生物量碳、氮的变化。结果表明: 1)放牧使得湿地植物群落优势种发生变化, 原有湿生植物逐渐向旱生化转变, 同时地上及地下生物量明显降低。2)退化湿地的植物呈现显著小型化现象。3)放牧退化湿地的土壤含水量较围封保育湿地低, 其垂直分布及地下根的垂直分布也发生变化。在低河漫滩, 土壤水分随土层的增加而增加, 根量也趋于深层化。但在高河漫滩湿地, 土壤含水量接近典型草原, 根未出现深层化分布趋势。4)放牧践踏引起土壤容重和土壤紧实度增加。5)放牧使得低河漫滩湿地土壤微生物生物量增加, 而在过渡区及高河漫滩湿地, 放牧使得土壤微生物生物量碳、氮含量显著降低。     

The Significance of Meander Restoration for the Hydrogeomorphology and Recovery of Wetland Organisms in the Kushiro River,a Lowland River in Japan

The meanders and floodplains of the Kushiro River were restored in March 2011. A 1.6‐km stretch of the straightened main channel was remeandered by reconnecting the cutoff former channel and backfilling the straightened reach, and a 2.4‐km meander channel was restored. Additionally, flood levees were removed to promote river–floodplain interactions. There were four objectives of this restoration project: to restore the in‐stream habitat for native fish and invertebrates; to restore floodplain vegetation by increasing flooding frequency and raising the groundwater table; to reduce sediment and nutrient loads in the core wetland areas; to restore a river–floodplain landscape typical to naturally meandering rivers. In this project, not only the natural landscape of a meandering river but also its function was successfully restored. The monitoring results indicated that these goals were likely achieved in the short term after the restoration. The abundance and species richness of fish and invertebrate species increased, most likely because the lentic species that formerly inhabited the cutoff channel remained in the backwater and deep pools created in the restored reach. In addition, lotic species immigrated from neighboring reaches. The removal of flood levees and backfilling of the formerly straightened reach were very effective in increasing the frequency of flooding over the floodplains and raising the water table. The wetland vegetation recovered rapidly 1 year after the completion of the meander restoration. Sediment‐laden floodwater spread over the floodplain, and approximately 80–90% of the fine sediment carried by the water was filtered out by the wetland vegetation.     

Flow velocity retardation and sediment retention in two constructed wetland–ponds

Hydraulic properties of two constructed wetland–ponds in agricultural watersheds in southern Finland were examined by simulations with two-dimensional hydrodynamic and water quality transport models. Hydraulic efficiency was determined for the existing and hypothetical layouts of both wetlands to find out the effects of different design options. Suspended sediment retention in the wetlands was simulated with a two-dimensional model for sediment transport. Hydraulic efficiency was found to be highly improved by baffles that direct the main flow to optimally exploit the wetland acreage. Also, an elongated shape of wetland appeared beneficial; hydraulic efficiency was high regardless of the size or position of the inlet. As for suspended sediment retention, the wetland area in relation to its watershed proved to be an essential factor. According to water quality observations, the wetland which occupied 5% of its watershed area was capable of reducing the inflow of total suspended solids (TSS) concentrations during flood events by 43–72%, whereas the reduction varied between −7 and 5% in the other wetland with a corresponding ratio of 0.5%. Model simulations of the same flood events plausibly predicted the output TSS concentrations, even though with wider ranges of the reductions (26 to 74 and −13 to 43%, respectively).     

Prairie Wolf Slough Wetlands Demonstration Project: A Case Study Illustrating the Need for Incorporating Soil and Water Quality Assessment in Wetland Restoration Planning,Design and Monitoring

In northeastern Illinois, restored wetlands are used to improve water quality in streams degraded by agriculture and urban development. Using freshwater wetlands to reduce nitrogen loading to lakes and rivers is well documented; however, there are fewer studies addressing their use to remove phosphorous. In 1998, a systematic water quality monitoring project was begun at Prairie Wolf Slough Wetland Demonstration Project, a restored palustrine emergent marsh wetland located on an abandoned farm field north of Chicago. The wetland drains 98 ha of mixed land uses into the Chicago River. Our objectives were to assess spatial and temporal variations in total suspended solids, soluble reactive and total phosphorous concentrations, and mass loadings and compute a mass balance and retention efficiency for these constituents. Water sampling was conducted from 1998 to 2003. In 2004, soil samples were collected from the marsh and an adjacent abandoned farm site and analyzed for soil test (Bray) phosphorus. The marsh effectively traps suspended solids but acts as a source of soluble reactive and total phosphorous to the river both during the growing and nongrowing seasons. Net export of phosphorous from the wetland was likely due to mobilization of orthophosphate as a result of anoxic conditions produced during inundation events. Often little consideration is given to the link between soil and water quality when locating restoration sites. Our study adds to a growing body of literature that clearly demonstrates the need for both soil and water quality assessments in wetland restoration planning, design, and monitoring.     

Species-area relationship and environmental predictors of fish communities in coastal freshwater wetlands of southern Brazil

In the Neotropics where fragmentation is common, environmental factors structuring fish communities are poorly known. In this study two hypotheses were tested in 13 coastal wetlands of southern Brazil: 1) physical features (such as wetland area, habitat diversity, water depth and temperature, and water and sediment chemistry) are important determinants of richness, density and composition of fish assemblages; and 2) species richness and composition of fish assemblages differ between wetlands with different hydroperiods (i.e. permanent versus intermittent). A total of 1,597 individuals distributed among 20 species were collected. Richness was positively associated with wetland area and water depth and it was negatively associated with water conductivity. The species-area power function explained 27.3% of the variation in richness. Fish richness was similar between permanent and intermittent wetlands. The density was negatively associated with water depth and temperature, and it was positively correlated with water nitrate concentration. The first three axes from the CCA accounted for 55.5% of total variation in fish composition. The most important variables related to fish composition were percentage of sediment organic matter, phosphorus concentration, habitat diversity and water depth. Composition of fish species changed among permanent and intermittent wetlands. Understanding the environmental factors that shape and maintain the biodiversity in these ecosystems is essential to develop conservation and management programs of wetlands in this region, where more than 90% of wetland systems have already been lost due to anthropogenic activities.     

The effects of the flood cycle on the diversity and composition of the phytoplankton community of a seasonally flooded Ramsar wetland in Bangladesh

Freshwater wetlands in Bangladesh are strongly influenced by the monsoons and the annual flood cycle has measurable impacts on the abiotic and biotic components of these ecosystems. The northeastern Haor Basin of Bangladesh is particularly rich in seasonally flooded freshwater wetlands that support a wide diversity of flora and fauna. These wetlands are of great importance to the local economy due to the abundance of rich floodplain fisheries. Little is known about the phytoplankton communities of these wetlands that are known to be linked with zooplankton and fish productivity. We investigated the seasonal variation in the diversity and abundance of phytoplankton assemblages in Tanguar Haor, a Ramsar wetland in northeastern Bangladesh during the period of inundation (June–December). A total of 107 genera of phytoplankton representing five classes were recorded. Blooms of Microcystis dominated the phytoplankton community throughout the study period but were particularly acute during the early part of the high water period. Among the Bacillariophyceae, Melosira was the most dominant, reaching bloom proportions early in the high water period. Factor analysis of physicochemical variables separated the flood cycle into four distinct periods: early high water, mid high water, late high water and low water periods. Phase of the flood cycle, nutrient availability, the physicochemical variables combined with the dominance of Microcystis seemed to be important in controlling the abundance, diversity and dynamics of the phytoplankton genera. The abundance of genera of desmids and some Bacillariophyceae is indicative of the relatively unpolluted conditions of Tanguar Haor.     

Migratory benthic fishes may induce regime shifts in a tropical floodplain pond

1. Alternative states are a widely recorded phenomenon in shallow lakes, which may shift between turbid‐ and clear‐water conditions. Here, we investigate whether such shifts in a tropical floodplain pond may be related to the effect of the flood pulse regime on the community structures of fish and macrophytes. 2. Using a long‐term data set, we demonstrate how benthic fish migration together with colonisation by submerged plants affected the transition from a turbid to a macrophyte‐dominated state in a floodplain pond without top‐down control. 3. In our study, the turbid state occurred mostly during low water phases and was largely characterised by high values for the biomass of benthic fish, chlorophyll‐a and total phosphorous. 4. During the period of rising water levels, the migration of benthic fish out of the pond occurs simultaneously with the establishment of submerged plants, while water turbidity decreases along with phytoplankton and nutrient concentrations, inducing a clear‐water phase. However, when submerged plants are absent and fish migration is low, a transient state is generated. 5. We suggest that, in contrast to temperate ponds and shallow lakes, where the main driving mechanisms establishing alternative states are related to cascading effects via the food chain, in tropical ponds and shallow lakes it is resuspension of sediments by benthic fish that plays the most significant role in establishing alternative states. However, the effect of the flood pulse regime plays an important role in the temporal dynamics of fish community structure by controlling benthic fish migration.     

Ecological impacts of dams,water diversions and river management on floodplain wetlands in Australia

Australian floodplain wetlands are sites of high biodiversity that depend on flows from rivers. Dams, diversions and river management have reduced flooding to these wetlands, altering their ecology, and causing the death or poor health of aquatic biota. Four floodplain wetlands (Barmah‐Millewa Forest and Moira Marshes, Chowilla floodplain, Macquarie Marshes, Gwydir wetlands) illustrate these effects with successional changes in aquatic vegetation, reduced vegetation health, declining numbers of water‐birds and nesting, and declining native fish and invertebrate populations. These effects are likely to be widespread as Australia has at least 446 large dams (>10 m crest height) storing 8.8 × 10⁷ ML (10⁶ L) of water, much of which is diverted upstream of floodplain wetlands. More than 50% of floodplain wetlands on developed rivers may no longer flood. Of all of the river basins in Australia, the Murray‐Darling Basin is most affected with dams which can store 103% of annual runoff and 87% of divertible water extracted (1983–84 data). Some floodplain wetlands are now permanent storages. This has changed their biota from one tolerant of a variable flooding regime, to one that withstands permanent flooding. Plans exist to build dams to divert water from many rivers, mainly for irrigation. These plans seldom adequately model subsequent ecological and hydrological impacts to floodplain wetlands. To avoid further loss of wetlands, an improved understanding of the interaction between river flows and floodplain ecology, and investigations into ecological impacts of management practices, is essential.     

Plankton metacommunities in floodplain wetlands under contrasting hydrological conditions

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Nitrogen processing and retention in Hungarian carp farms

Based upon a detailed study carried out 20 years ao on the sediment nitrogen content in the commercial carp ponds of Horv?thpuszta intensive farm and upon the reexamination of the same 19 ponds, we found an average annual rate of nitrogen accumulation of 174 pg N g^-' dry sediment. Nitrogen budgeting for the 20 years (1970–1990) was completed for input nitrogen sources of inorganic fertilization, duck feed, fish feed, manure, atmosphere deposition, filling water and nitrogen fixation, as well as for output sources of alfalfa, fish, rice, duck yield, drainage water and denitrification. The average annual nitrogen retention of 93 kg ha^-1 corresponded well to the 174 μg Ng^-1 measured value of nitrogen accumulation. During the 20 years of nitrogen accumulation on industrialized agricultural land of Hungary, the intensive fish farm received altogether 1246 tonnes of nitrogen and released only 686 tonnes to the environment. Therefore removing, processing and accumulating most of the available nitrogen while minimizing the pollution to the environment is one of the challenges for the future for both aquacultural and agricultural activities.     

Fish larvae, growth and biomass relationships in an Australian arid zone river: links between floodplains and waterholes

1. Floodplain inundation provides many benefits to fish assemblages of floodplain river systems, particularly those with a predictable annual flood pulse that drives yearly peaks in fish production. In arid‐zone rivers, hydrological patterns are highly variable and the influence of irregular floods on fish production and floodplain energy subsidies may be less clear‐cut. To investigate the importance of floodplain inundation to a dryland river fish assemblage, we sampled fish life stages on the floodplain of Cooper Creek, an Australian arid‐zone river. Sampling was focused around Windorah during a major flood in January 2004 and in isolated waterholes in March 2004 following flood drawdown. 2. Of the 12 native species known to occur in this region, 11 were present on the floodplain, and all were represented by at least two of three life‐stages – larvae, juveniles or adult fish. Late stage larvae of six fish species were found on the floodplain. There were site‐specific differences in larval species assemblages, individual species abundances and larval distribution patterns among floodplain sites. 3. Significant growth was evident on the floodplain, particularly by larval and juvenile fish, reflecting the combination of high water temperatures and shallow, food rich habitats provided by the relatively flat floodplain. 4. Low variation in biomass, species richness and presence/absence of juvenile and adult fish across four floodplain sites indicates consistently high fish productivity across an extensive area. 5. Similarities and differences in fish biomass between the floodplain and isolated post‐flood waterholes suggest high rates of biomass transfer (involving the most abundant species) into local waterholes and, potentially, biomass transfer by some species to other waterholes in the catchment during floodplain inundation and after floods recede. 6. The high concentration of fish on this shallow floodplain suggests it could be a key area of high fish production that drives a significant proportion of waterhole productivity in the vicinity. The Windorah floodplain provides favourable conditions necessary for the spawning of some species and juvenile recruitment of the majority of species. It is also appears to be a significant conduit for the movements of fish that underpin high genetic similarity, hence population mixing, of many species throughout the Cooper Creek catchment. The high floodplain fish production in turn provides a significant energy subsidy to waterholes after floodwaters recede. 7. The identification of key sites of high fish production, such as the Windorah floodplain, may be important from a conservation perspective. Key management principles should be: maintenance of the natural flooding regime; identification of the most productive floodplain areas; and maintenance of their connectivity to anastomosing river channels and the remnant aquatic habitats that ultimately sustain this fish assemblage through long‐term dry/drought and flood cycles.     

The role of algae in agriculture: a mathematical study

Synthetic fertilizers and livestock manure are nowadays widely used in agriculture to improve crop yield but nitrogen and phosphorous runoff resulting from their use compromises water quality and contributes to eutrophication phenomena in waterbeds within the countryside and ultimately in the ocean. Alternatively, algae could play an important role in agriculture where they can be used as biofertilizers and soil stabilizers. To examine the possible reuse of the detritus generated by dead algae as fertilizer for crops, we develop three mathematical models building upon each other. A system is proposed in which algae recover waste nutrients (nitrogen and phosphorus) for reuse in agricultural production. The results of our study show that in so doing, the crop yield may be increased and simultaneously the density of algae in the lake may be reduced. This could be a way to mitigate and possibly solve the environmental and economic issues nowadays facing agriculture.     

Creating riverine wetlands: Ecological succession, nutrient retention, and pulsing effects

Successional patterns, water quality changes, and effects of hydrologic pulsing are documented for a whole-ecosystem experiment involving two created wetlands that have been subjected to continuous inflow of pumped river water for more than 10 years. At the beginning of the growing season in the first year of the experiment (1994), 2400 individuals representing 13 macrophyte species were introduced to one of the wetland basins. The other basin was an unplanted control. Patterns of succession are illustrated by macrophyte community diversity and net aboveground primary productivity, soil development, water quality changes, and nutrient retention for the two basins. The planted wetland continued to be more diverse in plant cover 10 years after planting and the unplanted wetland appeared to be more productive but more susceptible to stress. Soil color and organic content continued to change after wetland creation and wetlands had robust features of hydric soils within a few years of flooding. Organic matter content in surface soils in the wetlands increased by approximately 1% per 3-year period. Plant diversity and species differences led to some differences in the basins in macrophyte productivity, carbon sequestration, water quality changes and nutrient retention. The wetlands continued to retain nitrate–nitrogen and soluble reactive phosphorus 10 years after their creation. There are some signs that sediment and total phosphorus retention are diminishing after 10 years of river flow. Preliminary results from the beginnings of a flood pulsing experiment in the two basins in 2003–2004 are described for water quality, nutrient retention, aboveground productivity, and methane and nitrous oxide gaseous fluxes.     

Will fencing floodplain and riverine wetlands from feral pig damage conserve fish community values?

Installation of feral pig (Sus scrofa) exclusion fences to conserve and rehabilitate coastal floodplain habitat for fish production and water quality services remains untested. Twenty‐one floodplain and riverine wetlands in the Archer River catchment (north Queensland) were surveyed during postwet (June–August) and late‐dry season (November–December) in 2016, 2017, and 2018, using a fyke net soaked overnight (~14–15 hr) to test: (a) whether the fish assemblage are similar in wetlands with and without fences; and (b) whether specific environmental conditions influence fish composition between fenced and unfenced wetlands. A total of 6,353 fish representing twenty‐six species from 15 families were captured. There were no wetland differences in fish assemblages across seasons, years and for fenced and unfenced (PERMANOVA, Pseudo‐F < 0.589, p < .84). Interestingly, the late‐dry season fish were far smaller compared to postwet season fish: a strategy presumably in place to maximize rapid disposal following rain and floodplain connectivity. In each wetland, a calibrated Hydrolab was deployed (between 2 and4 days, with 20 min logging) in the epilimnion (0.2 m) and revealed distinct diel water quality cycling of temperature, dissolved oxygen and pH (conductivity represented freshwater wetlands), which was more obvious in the late‐dry season survey because of extreme summer conditions. Water quality varied among wetlands in terms of the daily amplitude and extent of daily photosynthesis recovery, which highlights the need to consider local conditions and that applying general assumptions around water quality conditions for these types of wetlands is problematic for managers. Though many fish access wetlands during wet season connection, the seasonal effect of reduced water level conditions seems more overimprovised when compared to whether fences are installed, as all wetlands supported few, juvenile, or no fish species because they had dried completely regardless of the presence of fences.     

Nutrient farming: The business of environmental management

Restored wetlands could be used successfully to address our recurring problems of excess nutrients (and sediments) and flood damages along U.S. rivers. Credit markets for flood storage, nitrogen, phosphorous, carbon, atrazine, sediment, and many other constituents would economically motivate landowners to restore wetlands. The resulting high-quality open space would provide for recreation, wildlife habitat, and biodiversity. By instigating the market for nitrate-nitrogen, we can jumpstart the entire process of using markets to manage ecosystems. The nitrogen market will create a new land-economics paradigm and new opportunities for landowners, particularly farmers.     

Surface water sanitation and biomass production in a large constructed wetland in the Netherlands

In Western-Europe, agricultural practices have contributed to environmental problems such as eutrophication of surface and ground water, flooding, drought and desiccation of surrounding natural habitats. Solutions that reduce the impact of these problems are urgently needed. Common reed (Phragmites australis) is capable of sanitizing surface water and may function as green energy source because of its high productivity. Here, the results of an experiment in a constructed wetland in the Netherlands are presented where two different sanitation treatments were compared. Depending on the residence time and volume per unit area, reed is capable to reduce the total amount of nitrogen in the water with average efficiencies from 32 to 47% and the total amount of phosphorous with 27–45%. Although biomass production still varies largely between different parts of the constructed wetland, a rapid increase in biomass was observed since planting. Constructed wetlands with reed provide opportunities to improve water quality and reed produces enough biomass to serve as green energy source. Moreover, these wetlands also function as a flood water reservoir and are possibly advantageous for biodiversity. The optimal moment of reed harvesting depends on the goal of the owner. This moment should be chosen wisely, as it may have consequences for reed filter regeneration, biomass production, biodiversity, methane emission and water sanitation efficiency.     

Human impacts and the status of water quality in the Bundala RAMSAR wetland lagoon system in Southern Sri Lanka

The brackish coastal wetlands in the Bundala National Park, the only RAMSAR site of southern Sri Lanka, are an important waterfowl habitat and economic zone. Bundala Lagoon, one of the three key lagoons of the Bundala wetlands, remains largely intact and relatively pristine, but the other two interconnected lagoons, namely, Embilikala and Malala, are impacted by drainage from 25.6 km² of upstream agricultural lands. Seasonal variations of water quality of the three lagoons and the key processes affecting water quality and quantity in these lagoons were studied during three agricultural seasons, to better understand the characteristics of the system. Bundala Lagoon, which was not affected by agriculture, recorded the highest ammonia and total nitrogen concentrations and the lowest phosphorus levels. Higher phosphorus levels in Embilikala Lagoon were related to the upstream agricultural activities with 65% of its total phosphorus measured being reactive phosphorous. Phosphorus additions occurred during the early months of the paddy cultivating seasons. Processes affecting the water quality of the Embilikala-Malala lagoon system included agricultural drainage, livestock additions, and breaching of the sand bar between Malala Lagoon and the sea. The salinity level of the Bundala Lagoon was higher than the others due to the connection to the sea, salt farms in the western part, and less dilution of salt from relatively low surface runoff and rainwater. All three lagoons reported pH levels conducive to most aquatic species. The primary production by phytoplankton in the lagoons of the Bundala wetland was phosphorus limited regarding their ratios of nitrogen to phosphorus. This study provides an overview of the present status of the lagoons of the wetland. Further work is needed to evaluate the impact of the external nutrient and water inputs on the flora and fauna of the lagoon environments. Suitable management practices to ensure the sustainability of the lagoon ecosystem can be derived through this increased understanding.