Biomass allocation patterns in forests growing different climatic zones of China

Key message

Temperature generally explained variation in branch and leaf biomasses, whereas stem and root biomasses–temperature relationships restricted certain age stages may not hold at broader age ranges.

Abstract

In this study, biomass data for alpine temperate Larix forest, alpine Picea-Abies forest, temperate typical deciduous broadleaved forest, temperate Pinus tabulaeformis forest, temperate mixed coniferous-broadleaved forest, montane Populus-Betula deciduous forest, subtropical evergreen broadleaved forest, subtropical montane Cupressus and Sabina forest, subtropical Pinus massoniana forest and subtropical Cunninghamia lanceolata forest were used to examine the effect of temperature on biomass allocations between organs. The data of the ten forests were classified as ≤30, 31–60 and >60 years, to test whether biomass allocations of these age group forests vary systematically in their responses to temperature. With increasing mean annual temperature, branch and leaf biomasses significantly increased in ≤30, 31–60 and >60 years and all age groups; stem biomass significantly increased in ≤30-, 31–60- and >60-year groups, but no significant trend in all age groups; Root biomass significantly increased in 31–60, >60 years and all age groups, but had no response to mean annual temperature in the 30-year group, which suggest that root biomass allocation in response to temperature is dependent upon forest age. We conclude that temperature generally explained variation in branch and leaf biomasses, whereas stem and root biomasses–temperature relationships restricted certain age stages may not hold at broader age ranges.

     

South African mouse shrews (<Emphasis Type="Italic">Myosorex</Emphasis>) feel the heat: using species distribution models (SDMs) and IUCN Red List criteria to flag extinction risks due to climate change

Five species of mouse or forest shrews (Myosorex) are endemic to South Africa, Lesotho and Swaziland, four of which (Myosorex varius, Myosorex cafer, Myosorex longicaudatus and Myosorex cf. tenuis) are associated with montane or temperate grassland, fynbos and/or forest habitats while a fifth (Myosorex sclateri) is associated with lowland subtropical forests. Due to their small size, specialised habitat, low dispersal capacity, high metabolism and sensitivity to temperature extremes, we predicted that, particularly for montane species, future climate change should have a negative impact on area of occupancy (AOO) and ultimately extinction risks. Species distribution models (SDMs) indicated general declines in AOO of three species by 2050 under the A1b and A2 climate change scenarios (M. cafer, M. varius, M. longicaudatus) while two species (M. sclateri and M. cf. tenuis) remained unchanged (assuming no dispersal) or increased their AOO (assuming dispersal). While temperate species such as M. varius appear to be limited by temperature maxima (preferring cooler temperatures), the subtropical species M. sclateri appears to be limited by temperature minima (preferring warmer temperatures). Evidence for declines in AOO informed the uplisting (to a higher category of threat) of the Red List status of four Myosorex species to either vulnerable or endangered as part of a separate regional International Union for Conservation of Nature (IUCN) Red List assessment.     

Bipolar distribution of the cyst-forming dinoflagellate <Emphasis Type="Italic"> Polarella glacialis</Emphasis>

Morphological investigations of motile cells and cysts of a small dinoflagellate (strain CCMP 2088) isolated from Canadian Arctic waters were carried out under both light and scanning electron microscopy. This species strongly resembled Polarella glacialis (strain CCMP 1383), which up to now was known only from Antarctic sea ice. The photosynthetic pigment composition of strain CCMP 2088 is typical of dinoflagellates, with peridinin as a major accessory pigment. Phylogenetic relationships between the two strains and other dinoflagellate species were inferred from SSU nrDNA using Neighbour Joining and weighted parsimony analyses. Our results showed that strain CCMP 2088 and P. glacialis (strain CCMP 1383) grouped in the same clade (Suessiales clade), showing high similarity values (0.99%). Morphological and molecular data support the assignment of the Arctic strain to P. glacialis. The free-living Gymnodinium simplex and the two P. glacialis strains have a basal position in the Suessiales clade, as compared to Symbiodinium spp.     

Effects of both substrate and nitrogen and phosphorus fertilizer on <Emphasis Type="Italic">Sphagnum palustre</Emphasis> growth in subtropical high-mountain regions and implications for peatland recovery

Human activities have recently caused severe destruction of Sphagnum wetlands in subtropical high-mountain regions, calling for urgent efforts to restore Sphagnum wetlands. Through a greenhouse experiment in western Hubei, China, we studied the effects of different substrate types (peat and mountain soil) and different levels of nitrogen (N) (0, 2, 4, 6, 10 g m^?2 year^?1) and phosphorus (P) (0, 0.2, 0.5, 1, 2 g m^?2 year^?1) on the growth of Sphagnum palustre, which was evaluated by four growth indicators: length growth, number of capitula, coverage change and biomass. We aimed to determine the optimal nutrient conditions for S. palustre growth, which would contribute to the rapid colonization and restoration of Sphagnum wetlands. The results showed that the different substrates significantly influenced S. palustre growth. Compared with those of peat, the acidic properties of the local yellow brown soil in the subtropical high-mountain regions were more favorable for S. palustre growth. As N addition increased, the four growth indicators responded inconsistently to the different substrates. While the number of capitula markedly increased, the other three indicators significantly decreased in the mountain soil or exhibited no definitive changes in the peat. The addition of P markedly promoted S. palustre growth in both substrates. However, a threshold for P fertilization existed; the highest productivity occurred at P additions of 0.2 and 0.5 g m^?2 year^?1 in the peat and mountain soil, respectively. The N and P contents in the capitula increased in parallel as the N and P fertilization rates increased, suggesting that these nutrients were absorbed proportionately and were used during the growth of S. palustre.     

Comparative analysis of complete chloroplast genome sequences of two subtropical trees, <Emphasis Type="Italic">Phoebe sheareri</Emphasis> and <Emphasis Type="Italic">Phoebe omeiensis</Emphasis> (Lauraceae)

Phoebe is an economically important genus from the family Lauraceae. It is widely distributed in tropical and subtropical Asia, but systematics of the genus is unclear, and currently there is no species-level phylogeny. Here, we determined the complete chloroplast genome sequences of two species with long-range PCR and next genome sequencing technologies, and identified mutation sites and highly variable regions. These highly variable sites were used to reconstruct the phylogeny. The plastomes of Phoebe sheareri and P. omeiensis were 152, 876, and 152, 855 bp, respectively. Comparative genomic analysis indicated that there are 222 mutation sites including 146 substitutions, 73 indels, and 3 microinversions in both plastomes. Fifty-six single-nucleotide changes were identified in gene-coding regions, and 45 microsatellite sites were found for use in species identification. Fourteen divergence hotspots of 38 variable regions were located. Phylogeny was reconstructed using a Bayesian and maximum likelihood approach for 12 Phoebe species and other five related Lauraceae based on 15 of the highly variable regions including accD-psaI, atpB-rbcL, ndhC-trnV, ndhF-rpl32, petA-psbJ, psaA, psbA-trnH, rbcL, rps8-rpl14, rps16-trnQ, rpl32-trnL, trnC-petN, trnL-trnF, trnS-trnG, and ycf1 indicated that variability in the chloroplast regions proposed as variable is enough to detect divergence events among 12 taxa of Phoebe, and that maybe also useful to help to elucidate further relationships among other taxa of the genus.     

New dinocyst species (family Ceratiaceae Willey et Hickson) from the Lower Cretaceous of Southwestern Western Siberia

New species of Aptian dinoflagellate cyst of the family Ceratiaceae, Endoceratium immarinum sp. nov. and Nyktericysta (Hastodinium) sibirica sp. nov., are described. These taxa interpreted as nonmarine expand the palynological characteristics of the Vikulovo Formation of Western Siberia.     

Impact of <Emphasis Type="Italic">Phanerochaete chrysosporium</Emphasis> inoculation on indigenous bacterial communities during agricultural waste composting

This research was conducted to distinguish between the separate effects of the Phanerochaete chrysosporium inoculation and sample property heterogeneity induced by different inoculation regimes on the indigenous bacterial communities during agricultural waste composting. P. chrysosporium was inoculated during different phases. The bacterial community abundance and structure were determined by quantitative PCR and denaturing gradient gel electrophoresis analysis, respectively. Results indicated a significant stimulatory effect of P. chrysosporium inoculation on the bacterial community abundance. The bacterial community abundance significantly coincided with pile temperature, ammonium, and nitrate (P?<?0.006). Variance partition analysis showed that the P. chrysosporium inoculation directly explained 20.5 % (P?=?0.048) of the variation in the bacterial communities, whereas the sample property changes induced by different inoculation regimes indirectly explained up to 35.1 % (P?=?0.002). The bacterial community structure was significantly related to pile temperature, water-soluble carbon (WSC), and C/N ratio when P. chrysosporium were inoculated. The C/N ratio solely explained 7.9 % (P?=?0.03) of the variation in community structure, whereas pile temperature and WSC explained 7.7 % (P?=?0.026) and 7.5 % (P?=?0.034) of the variation, respectively. P. chrysosporium inoculation affected the indigenous bacterial communities most probably indirectly through increasing pile temperature, enhancing the substrate utilizability, and changing other physico-chemical factors.     

Influence of environemntal factors on phytoplankton photosynthetic activity in the Volga River reservoirs

The relation of the photosynthetic activity of phytoplankton biomass in the Volga River reservoirs to environmental factors has been analyzed. It is revealed that values of A/B and P/B coefficients depend to the largest extent on the content of total nitrogen, as well as on the temperature and illumination, the factors integrating the effect of geographical zonality. Among the proper phytoplankton parameters, its production capabilities are determined by the taxonomic composition, cenotic diversity and cell sizes, biomass, and physiological state of populations. Maximal values of A/B and P/B coefficients are characteristic of the algal communities with prevailing small-celled green, dinophytic, and cryptophytic algae.     

The bitter crab syndrome in commercial crabs in the Western part of the Bering and Chukchi Seas

We studied the distribution of the “bitter-crab” syndrome, a disease caused by the parasitic dinoflagellate Hematodinium sp., in eight commercial species of crabs in the west of the Bering and Chukchi seas. The crabs (25 388 individuals) were sampled during bottom trawl surveys of July?September 2010 and October?November 2012. The disease was first identified visually by a color change of the exoskeleton and the hemolymph of the animals and then using microscope analysis of hemolymph samples. Infestation was detected in crabs of three species, Chionoecetes opilio, C. bairdi, and Paralithodes platypus. The prevalence of the disease (the percent of infected individuals relative to all of those examined) in C. bairdi and P. platypus was very low, 0.1 and 0.3%, respectively. Infestation was widespread among C. opilio, its peak in the Bering Sea was in the fall. The average prevalence of the crab disease in different areas of the Bering Sea ranged from 0.8 to 10.8%. A high rate of crab infection was recorded in the Korfa Bay. In the Chukchi Sea, the average prevalence was 2%. Infestation by Hematodinium sp. was not revealed in the deep-sea snow crabs Chionoecetes tanneri and C. angulatus, and in three species of lithodid crabs, Paralithodes camtschaticus, P. brevipes, and Lithodes couesi. This can be explained by the small sample volume and/or ecology of these species, since the disease was registered in other areas in four of them.     

What is the type species of <Emphasis Type="Italic">Phanerochaete</Emphasis> (Polyporales,Basidiomycota)?

Phanerochaete velutina and the closely related species P. alnea, P. alnea subsp. lubrica, and P. rhodella are identified as distinct species based on morphological criteria and molecular analyses. Besides differences in macroscopic and microscopic basidiocarp features, the taxa differ in distribution and ITS sequence. Phanerochaete alnea is widely distributed in Eurasia and North America, whereas P. alnea subsp. lubrica is limited to the Pacific Coast of North America. Phanerochaete velutina is known from Eurasia and Alaska, and P. rhodella is found in North America only. Nomenclatural problems with the name Phanerochaete P. Karst. are discussed, and type specimens for Thelephora alnea Fr., the generic type of Phanerochaete, and Peniophora karstenii Massee are selected. Phanerochaete alnea, P. alnea subsp. lubrica, and P. velutina are described and illustrated. In addition, the synonymy of Phanerochaete robusta and P. aurantiobadia is confirmed.     

Boreal peat properties link to plant functional traits of ecosystem engineers

Aims

Warming has the potential to alter plant litter mass loss and nutrient release during decomposition. However, a great deal of uncertainty remains concerning how other factors such as litter species or substrate quality might modify the effects of increased temperature on decomposition. Meanwhile, the temperature sensitivity of plant litter decay in tropical and subtropical forest ecosystems remains poorly resolved.

Methods

This study was designed to assess the effects of experimental warming on litter decomposition and nutrient release of two contrasting tree species (Schima superba and Machilus breviflora) by translocating model forest ecosystems from the high-elevation sites to the lower-elevation sites in subtropical China. Translocating model mountain evergreen broad-leaved forest (MEBF) to the altitude of 300 m and 30 m increased the average monthly soil temperature at 5 cm depth by 0.88 and 1.84 °C, respectively during the experimental period. Translocating model coniferous and broad-leaved mixed forest (CBMF) to the altitude of 30 m increased the average monthly soil temperature at 5 cm depth by 0.85 °C.

Results

We found that experimental warming accelerated litter decomposition in both model forest types, and the promoting efficiency was greater when the temperature increased. The litter with high quality (Schima superba) had stronger response to warming than low quality litter (Machilus breviflora). Warming accelerated Na, K, Mg, P, N and Ca release from Schima superba litter, but only simulated Ca release from Machilus breviflora litter. Overall, litter decomposition was controlled by the order: soil temperature > litter quality > soil moisture > litter incubation forest type under experimental warming in the subtropical China.

Conclusion

We conclude that leaf litter decomposition was facilitated by experimental warming in subtropical China. Litter species might modify the effects of increased temperature on litter decomposition; however, forest type has no effect on litter decomposition.

     

Identification,characterization, and expression of the <Emphasis Type="Italic">SWEET</Emphasis> gene family in <Emphasis Type="Italic">Phalaenopsis equestris</Emphasis> and <Emphasis Type="Italic">Dendrobium officinale</Emphasis>

Sugars are important molecules that function not only as primary metabolites, but also as nutrients and signal molecules in plants. The sugar transport protein genes family SWEET has been recently identified. The availability of the Dendrobium officinale and Phalaenopsis equestris genome sequences offered the opportunity to study the SWEET gene family in this two orchid species. We identified 22 and 16 putative SWEET genes, respectively, in the genomes of D. officinale and P. equestris using comprehensive bioinformatics analysis. Based on phylogenetic comparisons with SWEET proteins from Arabidopsis and rice, the DoSWEET and PeSWEET proteins could be divided into four clades; among these, clade II specifically lacked PeSWEETs and clade IV specifically lacked DoSWEETs, and there were orthologs present between D. officinale and P. equestris. Protein sequence alignments suggest that there is a predicted serine phosphorylation site in each of the highly conserved MtN3/saliva domain regions. Gene expression analysis in four tissues showed that three PeSWEET genes were most highly expressed in the flower, leaf, stem, and root, suggesting that these genes might play important roles in growth and development in P. equestris. Analysis of gene expression in different floral organs showed that five PeSWEET genes were highly expressed in the column (gynostemium), implying their possible involvement in reproductive development in this species. The expression patterns of seven PeSWEETs in response to different abiotic stresses showed that three genes were upregulated significantly in response to high temperature and two genes were differently expressed at low temperature. The results of this study lay the foundation for further functional analysis of SWEET genes in orchids.     

Effects of temperature on competition and relative dominance of <Emphasis Type="Italic">Bradyrhizobium japonicum</Emphasis> and <Emphasis Type="Italic">Bradyrhizobium elkanii</Emphasis> in the process of soybean nodulation

Background and aims

Bradyrhizobium japonicum and Bradyrhizobium elkanii dominated soybean nodules in temperate and subtropical regions in Nepal, respectively, in our previous study. The aims of this study were to reveal the effects of temperature on the nodulation dominancy of B. japonicum and B. elkanii and to clarify the relationship between the effects of temperature and the climate-dependent distribution of Bradyrhizobium species.

Methods

A laboratory competition experiment was conducted between B. japonicum and B. elkanii strains isolated from the same temperate location in Nepal. A mixture of each strain was inoculated into sterilized vermiculite with or without soybean seeds, and inoculated samples were incubated at 33/27 (day/night) and 23/17 °C. Relative populations in the non-rhizosphere, rhizosphere, and nodules were determined by competitive PCR using specific primers for each strain at 0, 1, 2, and 4 weeks after inoculation.

Results

Both separately inoculated B. japonicum and B. elkanii strains formed nodules at both temperatures. Under competitive conditions, B. japonicum strains dominated at low temperature; however, at high temperature, both strains achieved co-nodulation in 1 week, with B. elkanii dominating after 2 weeks. The relative populations of both strains were similar in the non-rhizosphere and rhizosphere at low temperature, but B. elkanii strains dominated in these regions at high temperature.

Conclusions

The domination of B. japonicum strains in nodules at the low temperature appeared to be due to preferential infection, while the domination of B. elkanii strains at high temperature appeared to be due to the higher population of B. elkanii in the non-rhizosphere and rhizosphere, in addition to its domination in nodules after co-nodulation. The effects of temperature on the competition between B. japonicum and B. elkanii strains were remarkable and corresponded with the distribution of bradyrhizobial species in Nepal.

     

Bacterial communities during the period of massive under-ice dinoflagellate development in Lake Baikal

Taxonomic diversity of Lake Baikal bacteria during the period of massive under-ice development of dinoflagellate Gymnodinium baicalense was studied. During the ice-covered period in 2013, both the abundance and biomass of G. baicalense were several orders of magnitude higher than the values for previous years, the maximum values were 8.9 × 10⁶ cells/L and 405 g/m³, respectively. The taxonomic structure of bacterial communities was determined using the data obtained by 454 pyrosequencing (Roche) with Mothur 1.19.0. Predominance of three phyla was revealed: Bacteroidetes, Proteobacteria, and Actinobacteria. Massive dinoflagellate development resulted in a considerable decrease in the richness and diversity of bacterial communities compared to the results of the earlier long-term studies.     

Photosynthetic activity of the phytoplankton in the reservoirs of the Volga River

The parameters of the photosynthetic activity per unit of the phytoplankton biomass have been studied for the reservoirs of the Volga River. The wide range of variability is accompanied by most of the values of A/B ratio laying within 0.5–3 mg O₂/(mg · day); the P/B ratio in the photic layer varies as 0.5–3 day^–1 and in the whole water column varies as 1 day^-1. The maximal values have been observed for the reservoirs located in the Upper Volga River. The turnover period of the phytoplankton biomass in the photic zone of the studied reservoirs was 0.2–1.6 day, or in2.1–3.8 times higher than for the whole water column from the surface down to the bottom. The seasonal variability of the A/B and P/B ratios in each reservoir had more pronounced individual variability than the variability observed for the whole cascade during the summer season. The A/B and P/B ratios decrease significantly in the oligotrophic waters to the eutrophic; these ratios have an indicator value.     

Genome size and ploidy level among wild and cultivated <Emphasis Type="Italic">Prunus</Emphasis> taxa in Slovakia

2C DNA content and ploidy level variation of Prunus spinosa and closely related taxa together with Prunus domestica L. and Prunus insititia L. was studied in Slovakia. The aim of the study was to define genome sizes and find differences between closely related taxa within Prunus spinosa sensu lato mentioned in previous works. According to our results, investigated taxa can be divided into three groups according to ploidy level: Prunus spinosa, Prunus dasyphylla, Prunus ×fruticans, Prunus ×dominii and Prunus ×schurii are tetraploids, Prunus ×fechtneri is pentaploid, and P. domestica and P. insititia are hexaploids. Genome size differences within tetraploid taxa were relatively small (Prunus spinosa: 1.40?±?0.02, P. ×domini: 1.44?±?0.01, P. ×fruticans: 1.48?±?0.02, P. ×schurii: 1.44?±?0.02), but statistically significant. Although further research is needed, it seems that the concept of several taxa as product of hybridization between P. spinosa and cultivated plum species has been supported by our study.     

Two new species of linebellies (Genus Pseudoscopelus) with a revised key of species (Perciformes: Chiasmodontidae)

The swallowerfishes previously identified as Pseudoscopelus altipinnis and P. cf. altipinnis (Prokofiev, Kukuev, 2005) are described as a complex of two new, closely-related, allopatric species having antitropical distribution. P. astronesthidens—superspecies is most closely related to P. altipinnis due to its dark orobranchial cavity and the details of its photophore arrangement, but is unique within the genus in the disconnection between the mxf and apf series of photophores and in the details of jaws dentition. P. astronesthidens sp. n. (North Atlantic) differs from P. australis sp. n. (Southern Hemisphere) mainly in the long upper jaw and pectoral fins and in the presence of the ppf series of photophores. P. altipinnis Parr, 1933 is considered as a senior synonym of P. microps Fowler, 1934. A revised key for identification of the linebellies of the genus Pseudoscopelus is given.     

Heteroplasmy due to chloroplast paternal leakage: another insight into <Emphasis Type="Italic">Phragmites</Emphasis> haplotypic diversity in North America

Chloroplasts contain several copies of their DNA, and intra-individual haplotypic variation (heteroplasmy) is common in plants, but unexplored in the cosmopolitan genus Phragmites. The aims of this study were to assess if heteroplasmy due to paternal leakage of the chloroplast occurs in Phragmites and which new insights into the evolutionary history of Phragmites australis in North America can be identified from the heteroplasmic variation. Eight non-native P. australis haplotypes occur in North America and can interbreed with P. australis ssp. americanus and P. australis var. berlandieri, creating opportunities for biparental inheritance of distinctive haplotypes. The polymorphism in the trnT-trnL sequence length revealed seventeen cases of heteroplasmy worldwide, in contact zones of distantly related haplotypes and in known hybrid populations, nine of which occurred in North America. In America, the cloned sequences, combined with nuclear markers, identified recombined haplotypes between native P. australis ssp. americanus and invasive P. australis haplotype M, and between the species P. mauritianus and P. australis, due to chloroplast paternal leakage. The occurrence of heteroplasmy and recombined haplotypes suggest a local origin for some of the rare non-native haplotypes occurring in North America, and plastid leakage events in the evolutionary histories of P. australis ssp. americanus and P. australis var. berlandieri.