Evaluation of coliforms as indicators of water quality in India.

The total and thermotolerant coliform counts in rural drinking water derived from ground water, piped supplies and surface water are reported for a number of areas in India. To evaluate these counts as indicators of recent faecal contamination the total coliforms and thermotolerant coliforms isolated have been identified. Thermotolerant Escherichia coli formed 11.7% of the total coliforms and 75.1% of the thermotolerant coliforms. Citrobacter sp. (20.4%) and Klebsiella sp. (50.9%) were the other common total coliforms isolated and, among the thermotolerant coliforms, Klebsiella sp. (16.4%) was the only other organism frequently encountered. The total coliform counts were significantly correlated with water temperature. The applicability in tropical areas of standards developed for temperate climates is discussed.     

Acridids as indicators of disturbance in dry deciduous forest of West Bengal in India

Acridid communities are sensitive to anthropogenic disturbance and the community structure of acridids plays vital role in functioning the forest ecosystem. They are potentially useful bioindicators for conservation planning and habitat disturbances. Acridid assemblages of three different habitat types based on degree of disturbance as follows five natural sites, five moderately disturbed sites and five highly disturbed sites in Chaupahari forest, West Bengal, India were studied. Diversity, abundance, equitability and species richness of acridid were observed in respect to undisturbed and disturbed habitats. The species richness and diversity of the sites tracked the intensity of disturbance, the greatest value being associated with the natural site followed by the moderately disturbed site and highly disturbed site. The highest species richness and diversity index indicate the suitable habitat for acridid population. Statistical analysis infers that different species show different behavior and the sites are also different in relation to different habitat types.     

Diatoms as indicators of stream quality in the Kathmandu Valley and Middle Hills of Nepal and India

1. Diatoms are recognised as indicators in temperate streams, but only recently have assessments begun of their value in indicating stream quality in the tropics and sub‐tropics. Here, we extend previous studies by assessing stream diatom assemblages in relation to water quality and habitat character in the Kathmandu Valley, and in the Middle Hills of Nepal and northern India. We also assessed whether the U.K. Trophic Diatom Index (TDI) was sufficiently portable to reveal pollution in Himalayan rivers. In the more urbanised and highly agricultural Kathmandu Valley, we compared diatom response to water quality classes indicated by a local invertebrate index, the Nepalese Biotic Score (NEPBIOS). 2. Thirty and 53 streams in the Kathmandu Valley (2000) and Middle Hills (1994–96), respectively, were sampled in October and November during stable flows following the monsoon. Diatoms were collected in riffles, water samples taken for chemical analysis, and habitat character of the stream channel, bank and catchment assessed using river habitat surveys. In the Kathmandu Valley, macroinvertebrates were collected by kick‐sampling. 3. In total, 113 diatom taxa were found in the Kathmandu Valley streams and 106 in the Middle Hills. Of 168 taxa recorded, 62 occurred only in the Kathmandu Valley, 56 only in the Middle Hills and 50 were common to both areas. Most taxa found only in the Kathmandu Valley belonged to the genus Navicula while most taxa confined to the Middle Hills were Achnanthes, Fragilaria and Gomphonema. 4. In the Kathmandu Valley, richness and diversity increased significantly with K, Cl, SO₄ and NO₃, but declined significantly with Al, Fe, surfactants and phenols. Richness here also varied with habitat structure, being lowest in fast flowing, shaded streams with coarse substrata in forested catchments. In all streams combined, richness increased significantly with Si, Na and PO₄, but declined significantly with increasing pH, Ca and Mg. 5. Diatom assemblage composition in the Kathmandu Valley strongly reflected water chemistry as revealed by cations (K, Na, Mg, Ca), anions (Cl, SO₄), nutrients (NO₃, PO₄, Si), and also substratum composition, flow character and catchment land use. The commonest taxa in base‐poor forested catchments were Achnanthes siamlinearis, A. subhudsonis, A. undata and an unidentified Gomphonema species; Cocconeis placentula and Navicula minima in agricultural catchments; and Mayamaea atomus var. alcimonica, M. atomus var. permitis, and Nitzschia palea at polluted sites near settlements. Diatom assemblages in none‐agricultural catchments of the Kathmandu Valley and Middle Hills were similar, but they contrasted strongly between urban or agricultural catchments of the Kathmandu Valley and the less intensively farmed catchments of the Middle Hills. 6. In keeping with variations in assemblage composition, most streams in the Kathmandu Valley had higher TDI values (33–87, median = 64) and more pollution tolerant taxa (0–78%, median = 16) than streams in the Middle Hills (25–82, median 45, 0–26%, median = 2). TDI values correlated significantly with measured PO₄, Si, and Na concentrations in the Kathmandu Valley, and with Si and Na concentrations in the Middle Hills. There was some consistency between water quality classes revealed by NEPBIOS and diatoms, but also some contrast. Water quality class I–II sites had lower TDI values and were less species rich than water quality II sites, however, there were no significant differences in detrended correspondence analysis (DCA) assemblage scores and relative abundances of pollution tolerant taxa between NEPBIOS classes. 7. While diatoms in the Middle Hills indicate unpolluted or only mildly enriched conditions, they reveal pronounced eutrophication and organic pollution in the densely populated Kathmandu Valley. In addition, diatoms appear to respond to altered habitats in rural agricultural and urban areas. As demands on water resources in this region are likely to increase, we advocate the continued development of diatoms as indicators using methods based on what appear to be consistent responses in the TDI between Europe and the Himalaya.     

Coliphages as indicators of enteroviruses.

Coliphages were monitored in conjunction with indicator bacteria and enteroviruses in a drinking-water plant modified to reduce trihalomethane production. Coliphages could be detected in the source water by direct inoculation, and sufficient coliphages were detected in enterovirus concentrates to permit following the coliphage levels through different water treatment processes. The recovery efficiency by different filter types ranged from 1 to 53%. Statistical analysis of the data indicated that enterovirus isolates were better correlated with coliphages than with total coliforms, fecal coliforms, fecal streptococci, or standard plate count organisms. Coliphages were not detected in finished water.     

Galpha12 and Galpha13 as key regulatory mediator in signal transduction

It is generally thought that Galpha(12) and Galpha(13)-induced responses are exclusively mediated by small G protein Rho. However, Galpha(12) and Galpha(13) elicit divergent cellular responses: phospholipase C-epsilon activation, phospholipase D activation, cytoskeletal change, oncogenic response, apoptosis, MAP kinase activation and Na/H-exchange activation. In addition to Rho activation through RhoGEF, it has been recently demonstrated that Galpha(12) and Galpha(13) interact with several proteins and regulate their activities. However, physiological importance of the interaction of Galpha(12) and Galpha(13) with these proteins has not fully established. I summarize the recent progress of Galpha(12) and Galpha(13)-mediated signaling cascade.     

Lateral diffusion of M-13 coat protein in model membranes.

A fluorescent derivative of the M-13 phage coat protein (molecular weight 5260) was reconsituted into oriented multilayers and giant liposomes of dimyristoylphosphatidylcholine. The rate of lateral diffusion of the labeled protein in the fluid phase was measured as a function of temperature and found to be comparable to that of lipid probes. The protein was found to have a nonuniform lateral distribution in the solid phase of both types of model membranes. Cardiolipin (0.5 mol %) included in the multibilayers did not have any substantial effect upon the rate of diffusion.     

Evolution of protein 3D structures as diffusion in multidimensional conformational space

A theory of protein spatial-structure evolution in terms of random walks in multidimensional conformational space is proposed. It is shown that the spatial divergence in pairs of homologous proteins depends only on their sequence similarity and is independent of the protein size. X-ray data are reasonably well described in terms of the theory developed. Correspondence to: A.M. Gutin     

Close linkage of the Wilsons's disease locus to D13S12 in the chromosomal region 13q21 and not to ESD in 13q14

Summary Wilson's disease (WD) is an autosomal recessive disorder resulting in copper accumulation notably in liver and brain tissue. Linkage of the WD locus (WND) to ESD at 13q14 was first shown by studies in families of Middle Eastern origin using the isozymic polymorphism of esterase D. Using RFLPs detected by the ESD cDNA we could not confirm this reported close linkage in an analysis of 17 WD families of northwest European origin. A tight linkage was detected, however, to the marker D13S12, located more distally at 13q21. No obligate cross-overs were detected in 63 gametes informative for this marker. Our data confirm an assignment of WND to 13q14-21. Its localization, however, seems to be more distal to ESD than previously reported. Although genetic heterogeneity cannot be excluded, the observed differences between the two populations are probably due to random variation.     

Trends and uncertainties in Siberian indicators of 20th century warming

Estimates of past climate and future forest biomass dynamics are constrained by uncertainties in the relationships between growth and climatic variability and uncertainties in the instrumental data themselves. Of particular interest in this regard is the boreal-forest zone, where radial growth has historically been closely connected with temperature variability, but various lines of evidence have indicated a decoupling since about the 1960s. We here address this growth-vs.-temperature divergence by analyzing tree-ring width and density data from across Siberia, and comparing 20th century proxy trends with those derived from instrumental stations. We test the influence of approaches considered in the recent literature on the divergence phenomenon (DP), including effects of tree-ring standardization and calibration period, and explore instrumental uncertainties by employing both adjusted and nonadjusted temperature data to assess growth-climate agreement. Results indicate that common methodological and data usage decisions alter 20th century growth and temperature trends in a way that can easily explain the post-1960 DP. We show that (i) Siberian station temperature adjustments were up to 1.3 °C for decadal means before 1940, (ii) tree-ring detrending effects in the order of 0.6–0.8 °C, and (iii) calibration uncertainties up to about 0.4 °C over the past 110 years. Despite these large uncertainties, instrumental and tree growth estimates for the entire 20th century warming interval match each other, to a degree previously not recognized, when care is taken to preserve long-term trends in the tree-ring data. We further show that careful examination of early temperature data and calibration of proxy timeseries over the full period of overlap with instrumental data are both necessary to properly estimate 20th century long-term changes and to avoid erroneous detection of post-1960 divergence.     

Supporting Partners of the IAPB 14th Quadrennial Congress Dublin as of July 12th 2018

Melatonin is a ubiquitously present indoleamine with a vast capacity for modulating the growth and behavior of plants, animals, and microbes. Though melatonin was discovered in plants decades after its discovery in mammals, its presence has now been confirmed in almost all plant families. Despite this, the in vitro and in vivo mechanisms of action of melatonin are still poorly defined. Although there are an increasingly large number of investigations into the roles of melatonin in plants, few take advantage of in vitro culture systems. Melatonin has been found to possess several important roles in plant growth and development, including functions in rhythmic and cyclic processes, such as chronoregulation, seasonal and senescence processes, as well as modulation of reproductive development, control of root and shoot organogenesis, maintenance of plant tissues, and responses to biotic and abiotic stresses. This review highlights the potential for use of melatonin in several in vitro systems, the roles it plays in plant morphogenesis, and the importance of melatonin in communication within and between plants, and how in vitro systems can be exploited to better understand these understudied functions of melatonin.     

Lipids as indicators of eutrophication in marine coastal sediments.

Total organic carbon (TOC) and sedimentary lipid contents were investigated in the Bunnefjord, the most inner part of the Oslofjord (Norway). The Bunnefjord is an intermittent anoxic basin and has undergone major eutrophication since the early 1800s. A core from this fjord was collected at 100 m depths under anoxic remnant waters. The first 15 cm corresponding to deposits from 1500 to present were considered for analysis. Lipid classes were quantified by TLC-FID and the molecular composition of selected lipid classes was investigated by GC and GC-MS. Lipids were dominated by two main classes, phospholipids and hydrocarbons. The hydrocarbons represented up to 7.4% of total lipids in the sediment layers covering the period when the most extensive cultural eutrophication took place (1900 to 1970). The higher fluxes of organic carbon produced during this period may have controlled hydrocarbon inputs into the sediments, due to the hydrophobic character of these pollutants. The hydrocarbon concentration reversed toward pre-industrial levels in the more recent layers, which suggests an improvement of the water quality, possibly in response to improved treatment of the sewage in the cities around Bunnefjord.The second most abundant pool of lipids consists in phospholipids, mostly contributed by bacteria. Even though the concentration decreased with depth, their relative proportions to total lipids remained high, mainly in the deepest layers (>80% of total lipids). A rapid decrease of the polyunsaturated fatty acid methyl esters (FAME) from the phospholipid fraction in the upper 4 cm suggests a rapid biodegradation of planktonic inputs and meiofauna. Odd branched fatty acids were more probably contributed by bacteria linked to the high sedimentary hydrocarbon content. The down core distribution of 16:1omega7, 18:1omega7, 18:1omega5 esterified to phospholipids suggests a vertical zonation of the microbial community in relation to redox conditions and available organic matter. In addition to bacterial sulphur biomass, the presence of hopanoic acids in the phospholipids fraction suggests the contribution of bacteria growing on methane. According to the sterol composition, dominated by 4alpha(H)-methylsterols, dinoflagellates represent the major contributors to the organic matter produced in the water column, particularly during the period of extensive eutrophication. Long-chain diols (1,13-C(26), 1,15-C(30) and 1,15-C(32)) and long-chain keto-ols (1,15-C(30) and 1,15-C(32)) are reported for the first time at high latitudes. Their relative distributions (diol and keto-ol indexes of Versteegh et al. [Org. Geochem. 27 (1997)]) have allowed depicting a particular event during the eutrophication period, a freshwater intrusion with inputs of land-derived organic matter. This is in accordance with the downcore distribution of freshwater/terrestrial markers as sitosterol, dehydroabietic acid and iso- and anteiso-pimaric acids. The diol and keto-ol indexes have also underlined the general transition trend from marine to more brackish waters in the Bunnefjord. These last observations provide confidence into the use of these compounds in paleoenvironmental reconstruction.     

Fungal volatiles as indicators of food and feeds spoilage.

Fungal growth leads to spoilage of food and animal feeds and to formation of mycotoxins and potentially allergenic spores. Fungi produce volatile compounds, during both primary and secondary metabolism, which can be used for detection and identification. Fungal volatiles from mainly Aspergillus, Fusarium, and Penicillium have been characterized with gas chromatography, mass spectrometry, and sensory analysis. Common volatiles are 2-methyl-1-propanol, 3-methyl-1-butanol, 1-octen-3-ol, 3-octanone, 3-methylfuran, ethyl acetate, and the malodorous 2-methyl-isoborneol and geosmin. Volatile sesquiterpenes can be used for taxonomic classification and species identification in Penicillium, as well as to indicate mycotoxin formation in Fusarium and Aspergillus. Developments in sensor technology have led to the construction of "electronic noses" (volatile compound mappers). Exposure of different nonspecific sensors to volatile compounds produces characteristic electrical signals. These are collected by a computer and processed by multivariate statistical methods or in an artificial neural network (ANN). Such systems can grade cereal grain with regard to presence of molds as efficiently as sensory panels evaluating grain odor. Volatile compound mapping can also be used to predict levels of ergosterol and fungal colony-forming units in grain. Further developments should make it possible to detect individual fungal species as well as the degree of mycotoxin contamination of food and animal feeds.