DFT studies of the conversion of four mesylate esters during reaction with ammonia

The energetics of the Menshutkin-like reaction between four mesylate derivatives and ammonia have been computed using B3LYP functional with the 6-31+G** basis set. Additionally, MPW1K/6-31+G** level calculations were carried out to estimate activation barrier heights in the gas phase. Solvent effect corrections were computed using PCM/B3LYP/6-31+G** level. The conversion of the reactant complexes into ion pairs is accompanied by a strong energy decrease in the gas phase and in all solvents. The ion pairs are stabilized with two strong hydrogen bonds in the gas phase. The bifurcation at C2 causes a significant activation barrier increase. Also, bifurcation at C5 leads to noticeable barrier height differentiation. Both B3LYP/6-31+G** and MPW1K/6-31+G** activation barriers suggest the reaction 2 (2a?+?NH₃) to be the fastest in the gas phase. The reaction 4 is the slowest one in all environments.

The reaction of trimethylamine dehydrogenase with trimethylamine

The reductive half-reaction of trimethylamine dehydrogenase with its physiological substrate trimethylamine has been examined by stopped-flow spectroscopy over the pH range 6.0-11.0, with attention focusing on the fastest of the three kinetic phases of the reaction, the flavin reduction/substrate oxidation process. As in previous work with the slow substrate diethylmethylamine, the reaction is found to consist of three well resolved kinetic phases. The observed rate constant for the fast phase exhibits hyperbolic dependence on the substrate concentration with an extrapolated limiting rate constant (klim) greater than 1000 s-1 at pH above 8.5, 10 degrees C. The kinetic parameter klim/Kd for the fast phase exhibits a bell-shaped pH dependence, with two pKa values of 9.3 +/- 0.1 and 10. 0 +/- 0.1 attributed to a basic residue in the enzyme active site and the ionization of the free substrate, respectively. The sigmoidal pH profile for klim gives a single pKa value of 7.1 +/- 0. 2. The observed rate constants for both the intermediate and slow phases are found to decrease as the substrate concentration is increased. The steady-state kinetic behavior of trimethylamine dehydrogenase with trimethylamine has also been examined, and is found to be adequately described without invoking a second, inhibitory substrate-binding site. The present results demonstrate that: (a) substrate must be protonated in order to bind to the enzyme; (b) an ionization group on the enzyme is involved in substrate binding; (c) an active site general base is involved, but not strictly required, in the oxidation of substrate; (d) the fast phase of the reaction with native enzyme is considerably faster than observed with enzyme isolated from Methylophilus methylotrophus that has been grown up on dimethylamine; and (e) a discrete inhibitory substrate-binding site is not required to account for excess substrate inhibition, the kinetic behavior of trimethylamine dehydrogenase can be readily explained in the context of the known properties of the enzyme.     

Ultraviolet photoelectron studies of methyl substituted crysenes

Ultraviolet photoelectron spectroscopy and $\text{CNDO}\text{S3}$ molecular orbital calculations have been employed to investigate the ground-state electronic structure of all six of the monomethyl-substituted crysenes including the highly carcinogenic 5-methylcrysene. The photoelectron results yield ionization potentials for the five highest occupied π orbitals in each of these molecules. The data has been employed to test whether the radical cation theory of hydrocarbon carcinogenicity applies to methyl substituted crysenes.     

Structure-activity relationship studies of chloromethyl ketone derivatives for selective human chymase inhibitors

Based on the SAR study of a classical chloromethyl ketone derivative, Z-PheCH2Cl 1, a series of compounds were synthesized. Among all the derivatives, compound 21 was found to be a potent human chymase inhibitor with no inhibitory activity against human leukocyte cathepsin G.     

Cysteine chloromethyl and diazomethyl ketone derivatives with potent anti-leukemic activity

A series of cysteine diazomethyl- and chloromethyl ketone derivatives has been synthesized and evaluated against human B-lineage (Nalm-6) and T-lineage (Molt-3) acute lymphoblastic leukemia cell lines. The chloromethyl ketone compounds showed potent cytotoxicity against these cell lines, with IC50 values in the low micromolar range. The best compounds were N-acetyl-S-dodecyl-Cys chloromethyl ketone (IC50 = 2.0 microM against Nalm-6, 2.3 microM against Molt-3) and N-acetyl-S-trans,trans-farnesyl-Cys chloromethyl ketone (IC50 = 3.0 microM against Nalm-6 and 1.4 microM against Molt-3).     

Synthesis of pyrazole substituted methyl pheophorbide-a derivatives and their preliminary in vitro cell viabilities

The unique ability of chlorophyll derivatives to accumulate in tumorous tissues and to cause a photodynamic effect under laser radiation has been successively used in photodynamic therapy. In this connection, enormous research on modifications of the peripheral substituents in chlorophyll has shown that the presence and position of the substituents in the chlorin derivatives make a remarkable difference in biological activity. As a result, we directed our attention to synthesize methyl pheophorbide-a derivatives, chlorophyll-a derivatives, possessing heterocyclic aromatic substituents or pyrazole moieties on the peripheral positions and to examine preliminary in vitro effects of these new derivatives on A549 cancer cells for PDT. From our experimental results, it was observed that the biological effect induced by photosensitizers on cancer cells may also depend upon the chemical structure of the photosensitizers.     

Antimicrobial activity studies on some piperidine and pyrrolidine substituted halogenobenzene derivatives

The in vitro antibacterial and antifungal activities of the compounds synthesised from some 1,2,3,5-tetrahalogeno benzenes in presence of sodium piperidide and sodium pyrrolidide (2,6-dipiperidino-1,4-dihalogenobenzenes; 2,6-dipyrrolidino-1,4-dibromobenzene; 2,4,6-tripyrrolidino chlorobenzene; and 1,3-dipyrrolidino benzene) were investigated. The in vitro antimicrobial activities were screened against the standard strains: Staphylococcus aureus ATCC 25923 and Bacillus subtilis ATCC 6633 as Gram positive, Yersinia enterocolitica ATCC 1501, Escherichia coli ATCC 11230 and Klebsiella pneumoniae as Gram negative, and Candida albicans as yeast-like fungus. Compounds (3, 5, 6, 7) inhibited the growth of all the test strains at MIC values of 32–512 μg/ml. None of the four compounds (1, 2, 4, 8) studied showed antimicrobial activity against any of the test strains within the MIC range 0.25–512 μg/ml.     

Antimicrobial activity studies on some piperidine and pyrrolidine substituted halogenobenzene derivatives

The in vitro antibacterial and antifungal activities of the compounds synthesised from some 1,2,3,5-tetrahalogeno benzenes in presence of sodium piperidide and sodium pyrrolidide (2,6-dipiperidino-1,4-dihalogenobenzenes; 2,6-dipyrrolidino-1,4-dibromobenzene; 2,4,6-tripyrrolidino chlorobenzene; and 1,3-dipyrrolidino benzene) were investigated. The in vitro antimicrobial activities were screened against the standard strains: Staphylococcus aureus ATCC 25923 and Bacillus subtilis ATCC 6633 as Gram positive, Yersinia enterocolitica ATCC 1501, Escherichia coli ATCC 11230 and Klebsiella pneumoniae as Gram negative, and Candida albicans as yeast-like fungus. Compounds (3, 5, 6, 7) inhibited the growth of all the test strains at MIC values of 32-512 microg/ml. None of the four compounds (1, 2,4,8) studied showed antimicrobial activity against any of the test strains within the MIC range 0.25-512 micro/ml.     

Comparative structural studies of the first row early transition metal(III) chloride tetrahydrofuran solvates

Two compounds of empirical formula MCl₃- (THF)₃, M = V and Cr, have been characterized by single crystal X-ray studies. The VCl₃(THF)₃ molecule, which has a mer octahedral stereochemistry, crystallizes in the monoclinic space group P2₁/c with a= 8.847(2),b= 12.861(5),c= 15.134(3) Å, β = 91.94(2)°, V = 1721(1) ų and Z = 4. The V-Ci(1) and V-CI(2) distances have a mean value of 2.330 [3] Å while V-CI(3) = 2.297(2) Å, The VO(1) and VO(2) distances have a mean value of 2.061[8] Å while V-O(3) = 2.102(3) Å cis ClVCl angles average 92.0[5]° and cis OVO angles average 86.2[2]° . The isostmctural complex, CrCl₃(THF)₃, has a crystal structure made up of discrete octahedral mer-CrCl₃(THF)₃ molecules with the following unit cell dimensions (space group P2₁/c): a = 8.715(1), b= 12.786(3), c = 15.122(3) Å, β = 92.15(1)°, V = 1684(1) ų and Z = 4. The CrCl(1) and CrCl(2) distances have a mean value of 2.310131 Å while CrCl(3) = 2.283(2) Å. The CrO(1) and CrO(2) distances have a mean value of 2.0101171 Å while CrO(3) = 2.077(4) Å. cis ClCrCl angles average 90.9[4]° and cis OCrO angles average 86.1 [2]°. The structures of these two octahedral complexes and those previously reported for ScCl₃(THF)₃ and TiCl₃(THF)₃ are compared and certain general trends are discussed.     

Further studies on the mechanism of phenol-sulfuric acid reaction with furaldehyde derivatives

Even though the chromogens formed from mannose and galactose showed comparable absorbances at 480 nm in the conventional (developer present during heat of dilution) and modified (developer reacted at room temperature after cooling; epsilon mannose = 13,700, galactose = 14,000) phenol-sulfuric acid reactions, shoulders in the region 420-430 nm were prominent in the former method. Fucose was 10 times less reactive in the modified method (epsilon = 800) than in the conventional method. 2-Formyl-5-furan sulfonic acid reacted equally efficiently in the two methods (epsilon = 40,800). 5-Methyl-2-furaldehyde, unlike the sulfonate derivative or 5-hydroxymethyl-2-furaldehyde, required heat for condensation with phenol. 2-Furaldehyde dimethylhydrazone reacted 25 times better to form a chromogen (epsilon = 40,500) in the modified phenol-sulfuric acid method. The possible roles of intermediates between hexoses and furaldehydes in forming chromogens and the effect of substitution at the 2- and 5-positions of furaldehyde on the rates of condensation with phenol for the observed differences between the conventional and the modified methods are discussed.     

Hafnium chloride and hafnium methyl complexes bearing substituted pyrrolyl ligands: synthesis, characterization, and ethylene polymerization

Reactions of HfCl₄ with 2 and 3 equiv. of Li[C₄H₃N(CH₂NMe₂)-2] in toluene afford HfCl₂[C₄H₃N(CH₂NMe₂)-2]₂ (1) and HfCl[C₄H₃N(CH₂NMe₂)-2]₃ (2), respectively. Transmetallation reaction of 1 with 2 equiv. of MeLi results in a hafnium dimethyl compound HfMe₂[C₄H₃N(CH₂NMe₂)-2]₂ (3). A variable-temperature ¹H NMR spectroscopic study shows that the activation energy for the dissociation/association of the NMe₂ units of compound 2 in solution is ca. 13.6 kcal/mol. Compounds 1-3 are characterized by NMR spectroscopy and single crystal X-ray diffraction. A polymerization study shows that compounds 1 and 3 exhibit moderate activity toward ethylene in the presence of TIBA and MAO.     

Benzene and heterocyclic rings formation in cycloaddition reactions catalyzed by RuCp derivatives: DFT studies

The mechanism of the RuCp(COD)Cl catalyzed cyclotrimerization of acetylene, as well as the cyclocotrimerization of two alkynes with one molecule of ethylene, R-CN (R = H, Me, Cl, COOMe), CX₂ (X = O, S, Se), and HNCX (X = O, S) investigated by means of high level DFT/B3LYP calculations, has been reviewed. The key reaction step is in all cases the oxidative coupling of two alkyne ligands to give a metallacyclopentatriene intermediate (or metallacyclopentadiene in other systems). This metallacycle adds unsaturated molecules, containing CC, CC and CX bonds, or RCN, CX₂, and HNCX, in a concerted fashion, directly to the RuC bond, forming bicyclic carbenes. The cycle is completed by a rearrangement followed by an exothermic displacement of the arene or pyridine, by two acetylene molecules regenerating the catalytically active species. Small differences are found depending on the molecules and bonds involved. These reactions are reviewed and the proposed mechanisms compared with other available studies.     

Theoretical studies on the molecular structure and vibrational spectra of some dimethyl substituted pyridine derivatives

The molecular geometries, normal mode frequencies, intensities and corresponding infrared assignments of monomeric and dimeric 2,3-dimethylpyridine, 2,4-dimethylpyridine, 3,4-dimethylpyridine, 3,5-dimethylpyridine and monomeric 2,6-dimethylpyridine in the ground state were investigated at the density functional theory (DFT)-B3LYP level using the 6-311+G(d, p) basis set. The vibrational frequencies and geometric parameters of C–H stretching and bending in the fundamental region were calculated and compared to the Fourier transform infrared (FT-IR) data obtained. In the studied monomeric and dimeric dimethyl substituted pyridine derivatives, the C–H stretching and bending frequency shifts that occur between the dimer and the monomer may be diagnostic of the magnitude of dimerization energy. As supported by data in the literature, the most stable dimeric form was obtained for the 3,4-dimethylpyridine molecule. Figure Molecular model and numbering scheme of the studied dimeric dimethylpyridinederivatives