Development and function of the thymus in teleosts

The thymus plays a pivotal role in the development of the adaptive immune system, an important factor that separates higher vertebrates from the rest of the animal phyla. The development of functional T-cells from thymocytes is a crucial step in the development of a functional vertebrate immune system and whilst recent advances in molecular and developmental biology have advanced our understanding of T-cell development, they have also provided potential model species across the vertebrate phyla including the zebrafish (Danio rerio). However, this species is one of more than 20,000 species of fish that could assist in elucidating the development of the vertebrate thymus and, consequently, the evolution of the vertebrate immune response. In this paper we review the knowledge of the teleost thymus through the organogenesis and development studies in teleosts together with advances in molecular and functional approaches. Where necessary we will combine this knowledge with that obtained in higher vertebrates.     

甲壳动物精氨酸激酶的结构与功能

精氨酸激酶（Arginine kinase）是调节无脊椎动物能量代谢的重要酶,在调节无脊椎动物体内磷酸精氨酸与ATP之间的能量平衡过程中具有重要作用。甲壳动物是节肢动物门内最重要的类群之一,并具有重要的经济价值。本文综述了甲壳动物体内精氨酸激酶的分子构象、表达变化及生理功能等方面的研究进展,为深入研究甲壳动物的能量代谢调控机制提供必要的参考。另外,文中对甲壳动物精氨酸激酶的重要性和研究中存在的问题进行了讨论。     

Allatostatins of the tiger prawn,Penaeus monodon (Crustacea: Penaeidea)

More than 40 peptides belonging to the -Y/FXFGL-NH(2) allatostatin superfamily have been isolated and identified from the central nervous system (CNS) of the tiger prawn, Penaeus monodon (Crustacea: Penaeidea). The peptides can be arranged in seven sub-groups according to the variable post-tyrosyl residue represented by Ala, Gly, Ser, Thr, Asn, Asp, and Glu. Two of the residues (Thr and Glu) have not been observed in this position previously in either insects or crustaceans. Also reported for the first time for allatostatins, two of the peptides are N-terminally blocked by a pyroglutamic acid residue. The yields of certain peptides with similar amino acid sequences to each other were, in some instances, very different. As an example, the yield of ANQYTFGL-NH(2) was 2pmol, compared with ASQYTFGL-NH(2), with a yield of 156 pmol. There are several possibilities to account for this. If, as in all species so far investigated, there is a single allatostatin gene in P. monodon, then it would appear that different sub-populations have contributed mutant forms of particular peptides to the extract. Another, less likely possibility is that this species has more than one allatostatin gene, producing a variable array of peptides albeit in different molar ratios. Several peptides were present apparently as a result of the loss of one or more residues at the N-terminus of a larger form, either due to N-terminal degradation or specific post-translational processing. The number of peptides identified exceeds that for any other insect or crustacean species previously investigated. None is identical to any of the 60-70 insect allatostatins so far identified, and only three are common to other crustaceans. Immunohistochemical study of the CNS of P. monodon, with the same antisera as used to monitor the purification, confirms the widespread nature and complexity of allatostatinergic neural pathways in arthropods. Thus, all neuromeres of the brain, and all except one of the ventral cord ganglia, possess allatostatin neurons and extensive areas of allatostatin-innervated neuropile. In addition to the cytological evidence that the allatostatins act as neurotransmitters, associated with tissues as varied as eyes and legs, their presence in neurohemal areas such as the sinus gland and the perineural sheath of the thoracic ganglia suggests a neuroendocrine function. As well as posing a challenge to physiologists assigning specific functions to the allatostatins, their extensive intra-species multiplicity, linked to their inter-species variability, also presents a complex problem to geneticists and evolutionists.     

Arthropods in biodiversity hotspots: the case of the Phytoseiidae (Acari: Mesostigmata)

The biodiversity hotspot concept was defined by Myers in 1988 to determine priority areas for conservation. They have high endemism levels and have lost more than 70% of their original vegetated area. To date, there is little information on arthropod diversity in these zones. This work focuses on the biodiversity of the Phytoseiidae (Acari), one of the best known among the order Mesostigmata, in these threatened areas. These mites are usually predators and they are worldwide spread. Geographic distribution of phytoseiids in 27 biodiversity hostspots was assessed from data of the last world catalogue published in 2004. One thousand two hundred and thirty species are reported from at least one hotspot (62% of the total species number) and 604 species (30% of the total species number) are endemic to the 27 hotspots considered. The number of reports/publication in hotspot areas (2.6) is higher than in non-hotspot zones (1.5). Hotspots areas could be thus considered as a great reservoir of the Phytoseiidae diversity, just as they are for vertebrates and plants. Correlations between plant, vertebrate, mite diversity and endemism, as well as congruence rates between endemism levels of these three organisms suggest that the biodiversity patterns of plants and vertebrates mirror well those of the Phytoseiidae (both for endemicity and species richness). More intense conservation efforts in biodiversity hotspots would thus be assumed to affect plant and vertebrate biodiversity, as already known, but also arthropod biodiversity, as it was assumed. These results further support thus the importance of these zones in biodiversity conservation, even for organisms like mites, very small and poorly studied in this regards. More data on arthropods are, however, required to confirm these preliminary observations.     

Pinching forces in crayfish and fiddler crabs,and comparisons with the closing forces of other animals

The pinching forces of crustaceans are in many respects analogous to the biting forces of vertebrates. We examined the effects of body size and chelae size and shape, on the closing forces of the fiddler crab, Uca pugilator, and the crayfish, Procambarus clarkii. We hypothesized that the allometric relationships would be similar among species, and comparable to those reported for other decapod crustaceans. We further hypothesized that the scaling of the closing forces of crustaceans, with respect to body size and with the geometry of the pinching or biting structures, would be similar to that of vertebrates. We found that pinching forces increased with body mass, claw dimensions, and claw mass in U. pugilator, but only with claw height and claw mass in P. clarkii. Contraction time increased with body mass for both species combined, whereas contraction speed decreased. Pooled data for these and 17 other species of decapod crustacean revealed a positive correlation between the pinching force and body mass with a scaling exponent of 0.71. These data are remarkably comparable to the values on closing forces of vertebrate jaws, with the pooled data having a scaling exponent of 0.58, slightly below the value of 0.67 predicted for geometric similarity. Maximum closing forces vary tremendously among both crustaceans and animals in general, with body size and food habits being among the most important determining factors.     

Predicting the Mosquito Species and Vertebrate Species Involved in the Theoretical Transmission of Rift Valley Fever Virus in the United States

Rift Valley fever virus (RVFV) is a mosquito-borne virus in the family Bunyaviridiae that has spread throughout continental Africa to Madagascar and the Arabian Peninsula. The establishment of RVFV in North America would have serious consequences for human and animal health in addition to a significant economic impact on the livestock industry. Published and unpublished data on RVFV vector competence, vertebrate host competence, and mosquito feeding patterns from the United States were combined to quantitatively implicate mosquito vectors and vertebrate hosts that may be important to RVFV transmission in the United States. A viremia-vector competence relationship based on published mosquito transmission studies was used to calculate a vertebrate host competence index which was then combined with mosquito blood feeding patterns to approximate the vector and vertebrate amplification fraction, defined as the relative contribution of the mosquito or vertebrate host to pathogen transmission. Results implicate several Aedes spp. mosquitoes and vertebrates in the order Artiodactyla as important hosts for RVFV transmission in the U.S. Moreover, this study identifies critical gaps in knowledge which would be necessary to complete a comprehensive analysis identifying the different contributions of mosquitoes and vertebrates to potential RVFV transmission in the U.S. Future research should focus on (1) the dose-dependent relationship between viremic exposure and the subsequent infectiousness of key mosquito species, (2) evaluation of vertebrate host competence for RVFV among North American mammal species, with particular emphasis on the order Artiodactyla, and (3) identification of areas with a high risk for RVFV introduction so data on local vector and host populations can help generate geographically appropriate amplification fraction estimates.     

Sexual system in the tanaidacean Falsapseudes bowmani (Crustacea: Malacostraca: Peracarida)

With more than 40,000 species, Malacostraca is the most diverse crustacean class. Most malacostracans are gonochoristic, but simultaneous hermaphrodites are also known. Tanaidacea is one of two malacostracan orders that includes simultaneously hermaphroditic species; so far, simultaneous hermaphroditism has been confirmed externally and internally in only two tanaidacean species, both in the genus Apseudes (Apseudidae). Here we show, through external and internal morphological observations of fixed specimens, that the apseudid Falsapseudes bowmani is a simultaneous hermaphrodite, making Falsapseudes the second tanaidacean genus in which simultaneous hermaphroditism has been confirmed both externally and internally. In this species, the epistome (a projection on the clypeus) was thick and elongate in large specimens but was thin and spiniform in smaller specimens; the brooding of eggs or embryos was observed only in thin‐epistome individuals, although a pair of ovaries was confirmed in both thick‐ and thin‐epistome individuals. This suggests that individuals with a thick epistome may act as males while also retaining the female reproductive organs.     

A degenerate ParaHox gene cluster in a degenerate vertebrate

The ParaHox genes consist of 3 homeobox gene families, Gsx, Xlox, and Cdx, all of which have fundamental roles in development. Xlox (known as IPF1 or PDX1 in vertebrates), for example, is crucial for development of the vertebrate pancreas and is also involved in regulation of insulin expression. The invertebrate amphioxus has a gene cluster containing one gene from each of the gene families, whereas in all vertebrates examined to date there are additional copies resultant from ParaHox gene cluster duplications at the base of the vertebrate lineage. Extant vertebrates basal to bony and cartilaginous fish are central to the question of when and how these multiple genes arose in the vertebrate genome. Here, we report the mapping of a ParaHox gene cluster in 2 species of hagfishes. Unexpectedly, these basal vertebrates have lost a functional Xlox gene from this cluster, unlike every other vertebrate examined to date. Furthermore, our phylogenetic analyses suggest that hagfishes may have diverged from the vertebrate lineage before the duplications, which created the multiple ParaHox clusters in jawed vertebrates.     

Ageing and longevity in the Decapoda (Crustacea): A review

Ageing and longevity is a neglected field of crustacean biology. Information on longevity is available for less than 2% of the extant species of the Decapoda. Maximum ages reliably determined range from 40 days to 72 years corresponding to a life span difference of a factor of 650. The shortest-lived decapods are planktonic dendrobranchiate shrimps, and particularly long-lived species with life spans of decades are found in the Astacidea. Most decapods seem to live for 1-10 years. High geographical latitude, the deep sea and freshwater caves promote longevity. The majority of the Decapoda is indeterminately growing and presumably characterized by negligible senescence. The adults of the determinately growing decapods like some brachyuran crabs suffer from mechanical senescence and are unable to regenerate lost appendages. The decapod crustaceans have developed many effective anti-ageing mechanisms including moulting, detoxification of free radicals, removal of cellular waste, renewal of tissues by life-long stem cell activity, regeneration of appendages, detoxification of environmental pollutants and isolation of pathogens and diseased tissue areas by melanisation and encapsulation. Age related diseases including cancer are virtually unknown. The present compilation of data on longevity and senescence in decapods is the first one that covers the whole spectrum of a higher invertebrate taxon. It is hoped to provide an interesting source of information for carcinologists and biogerontologists. Further improvement of knowledge on ageing and longevity in the Decapoda would be beneficial for crustacean aquaculture, fisheries and ecological modelling. Some decapods even have good potential to become models for general ageing research.     

Checklist of the helminth parasites of vertebrates in Costa Rica

Helminth parasites of vertebrates have been studied in Costa Rica for more than 50 years. Survey work on this group of parasites is far from complete. We assembled a database with all the records of helminth parasites of wild and domestic vertebrates in Costa Rica. Information was obtained from different sources such as literature search (all published accounts) and parasite collections. Here we present a checklist with a parasite-host list as well as a host-parasite list. Up to now, 303 species have been recorded, including 81 species of digeneans, 23 monogeneans, 63 cestodes, 12 acanthocephalans, and 124 nematodes. In total, 108 species of vertebrates have been studied for helminths in Costa Rica (31 species of fishes, 7 amphibians, 14 reptiles, 20 birds, and 36 mammals). This represents only 3.8% of the vertebrate fauna of Costa Rica since about 2,855 species of vertebrates occur in the country. Interestingly, 58 species (19.1 %) were recorded as new species from Costa Rica and most of them are endemic to particular regions. Considering the valuable information that parasites provide because it is synergistic with all the information about the natural history of the hosts, helminth parasites of vertebrates in Costa Rica should be considered within any initiatives to accomplish the national inventory of biological resources. Starting with this compilation work, the Colección de Helmintos de Costa Rica (CHCR), hosted at the Facultad de Microbiología, Universidad de Costa Rica, has re-emerged and it is our hope that it will have the standards of quality to assure that it will become the national depository of helminths in the country.     

Identification of a pentanucleotide telomeric sequence, (TTAGG)n, in the silkworm Bombyx mori and in other insects.

A pentanucleotide repetitive sequence, (TTAGG)n, has been isolated from a silkworm genomic library, using cross-hybridization with a (TTNGGG)5 sequence, which is conserved among most eukaryotic telomeres. Both fluorescent in situ hybridization and Bal 31 exonuclease experiments revealed major clusters of (TTAGG)n at the telomeres of all Bombyx chromosomes. To determine the evolutionary origin of this sequence, two types of telomeric sequence, (TTAGG)5 and a hexanucleotide repetitive sequence, (TTAGGG)4, which is conserved mainly among vertebrate and several invertebrate telomeres so far examined, were hybridized to DNAs from a wide variety of eukaryotic species under highly stringent hybridization conditions. The (TTAGGG)5 oligonucleotide hybridized to genomic DNAs from vertebrates and several nonvertebrate species, as has been reported so far, but not to any DNAs from insects. On the other hand, the Bombyx type of telomere sequence, (TTAGG)n, hybridized to DNAs from 8 of 11 orders of insect species tested but not to vertebrate DNAs, suggesting that this TTAGG repetitive sequence is conserved widely among insects.     

Selfing versus outcrossing in the androdioecious clam shrimp,Eulimnadia texana (Crustacea,Conchostraca)

The clam shrimpEulimnadia texana is an androdioecious crustacean in which hermaphrodites may self fertilize or outcross with males but cannot outcross with other hermaphrodites. Outcrossing is maintained within most populations of this species despite the high genetic cost of sex, suggesting that compensating factors provide an advantage to outcrossing. We hypothesized that one such benefit would be the production of larger clutch sizes resulting from outcrossed matings. To test this prediction, we recorded the body sizes and clutch sizes of hermaphrodites which mated via selfing or bia outcrossing. Clutch sizes showed significant, almost exponential, increases as body size increased in both selfing and outcrossing hernmaphrodites. The rate of this increase was the same for both groups, and there was no significant difference in clutch size when body size was controlled for between the two fertilization types.     

Pentastomids and the immune response

Pentastomids are a class of crustacean endoparosites that, as adults, parasitize the respiratory tract of vertebrates. They have evolved some unique strategies for long-term survival in vertebrate lungs which appear to be equally useful in thwarting inflammatory responses in the tissues of intermediate hosts. In this article, John Riley outlines the possible biological roles and immunological relevance of pentastomid excretory/secretory (E/S) products that may be important to parasite survival.     

Reference standards for flow cytometry and application in comparative studies of nuclear DNA content

Nuclear DNA mass in cells from a reference species can be used to obtain high-resolution estimates of DNA mass from a target species. In our study of DNA mass in cells from 45 selected species, representing each of the major vertebrate classes, we have obtained values of from 1.5 to 110.0 pg of DNA. Because values in or near this range would be expected in the study of nuclear DNA mass in vertebrates and other organisms, the species in this report can provide a useful catalogue of references for comparative studies of DNA.     

Nuclear DNA amounts in pacific Crustacea

Nuclear DNA amounts have been determined for 42 species of crustaceans bringing the total number of species with known nuclear DNA content to over 70. Genome size in Crustacea varies over a 25-fold range with a modal value of 2 to 3 pg haploid being common in many groups. Both average genome size and the amount of variability among species are characteristic for certain groups. A trend towards small genomes is evident in advanced and specialized crustacean groups. Somatic polyploidy is a very pronounced feature of the Crustacea. The data suggest that evolution by polyploidy may be more common in crustaceans than earlier data had indicated. These features and the presence of very characteristic satellite fractions in the nuclear DNA recommend the Crustacea for further studies in evolutionary genetics.     

Five Nkx5 genes show differential expression patterns in anlagen of sensory organs in medaka: insight into the evolution of the gene family

We report the identification and characterisation of five different Nkx5-related genes in medaka fish (Oryzias latipes). They constitute homologues of genes previously isolated in higher vertebrates, Nkx5--1, Nkx5--2, Hmx1/Nkx5--3 and SOHo-1, and were named accordingly: OlNkx5--1.1, OlNkx5--2, OlNkx5--3 and OlSOHo. For the Nkx5--1 gene a new, second homologue, OlNkx5--1.2, was isolated. In medaka, Nkx5 and SOHo genes are differentially expressed in three developing sensory organs: eye, ear and lateral line and later in defined brain regions. Phylogenetic analyses of the entire Nkx5 family revealed that four paralogous Nkx5 groups, Nkx5--1, Nkx5--2, Hmx1/Nkx5--3/GH6 and SOHo, are present in vertebrates. Only some of the Nkx5 family members have been identified in singular vertebrate species so far. Here we present, for the first time, the isolation of representatives of each Nkx5 subgroup in one species, the medaka fish. Based on similarities in sequence and expression patterns, and genomic organisation we propose a model of the evolutionary history of the Nkx5 family. The model predicts that the four vertebrate Nkx5 genes arose by a tandem duplication, followed by chromosomal duplication. The two Nkx5--1 genes identified so far exclusively in medaka most probably result from an additional genome duplication in the fish lineage.     

Remarks on the deep-sea decapod fauna of the Sea of Marmara (Crustacea: Decapoda)

A total of 1127 crustacean specimens was sampled from five stations in the deep-sea depressions of the Sea of Marmara (>1000?m deep). Calocaris macandreae Bell, 1853 was by far the dominant species at all stations. Polycheles typhlops C. Heller, 1862 and Sergestes robustus Smith, 1882 were found in low numbers.     

Characterization of novel GPCR gene coding locus in amphioxus genome: gene structure, expression, and phylogenetic analysis with implications for its involvement in chemoreception

Chemosensation is the primary sensory modality in almost all metazoans. The vertebrate olfactory receptor genes exist as tandem clusters in the genome, so that identifying their evolutionary origin would be useful for understanding the expansion of the sensory world in relation to a large-scale genomic duplication event in a lineage leading to the vertebrates. In this study, I characterized a novel GPCR (G-protein-coupled receptor) gene-coding locus from the amphioxus genome. The genomic DNA contains an intronless ORF whose deduced amino acid sequence encodes a seven-transmembrane protein with some amino acid residues characteristic of vertebrate olfactory receptors (ORs). Surveying counterparts in the Ciona intestinalis (Asidiacea, Urochordata) genome by querying BLAST programs against the Ciona genomic DNA sequence database resulted in the identification of a remotely related gene. In situ hybridization analysis labeled primary sensory neurons in the rostral epithelium of amphioxus adults. Based on these findings, together with comparison of the developmental gene expression between amphioxus and vertebrates, I postulate that chemoreceptive primary sensory neurons in the rostrum are an ancient cell population traceable at least as far back in phylogeny as the common ancestor of amphioxus and vertebrates.