24种食蟹猴MHC B座位等位基因序列特征与进化分析

食蟹猴(Macaca fascicularis,Mafa)是重要的医学研究动物模型,被大量用于药物及移植医学试验。为探讨本地食蟹猴MHC I类基因B座位的多态性,本研究经大量PCR,克隆与测序,从10只食蟹猴中分离到24种Mafa-B等位基因的全长序列,其中4种为新序列,已递交NCBI数据库,并给予系统命名。在每个个体中均获得6至11条Mafa-B等位基因,显示食蟹猴的MHC-B座位出现扩增,食蟹猴MHC-B为重复基因座的特征与恒河猴类似。氨基酸序列比对分析得出,MHC-B基因在抗原肽结合区高度多态。     

食蟹猴微卫星DNA标记遗传监测及多态性分析

目的研究国内食蟹猴种群的遗传背景特性,建立食蟹猴种群遗传质量监测方法。方法采用微卫星DNA遗传标记技术对50只食蟹猴种群个体进行遗传质量监测及DNA多态性分析。结果从100个微卫星DNA位点中筛选出20个多态性高的位点,其食蟹猴种群个体的等位基因数目为5-10条,个体间均呈现高度的多态性;其观察等位基因数（Na）为5.0～10.0,有效等位基因数（Ne）为4.6118～8.3404,基因多样性（H）为0.7832～0.8801和香隆信息指数（I）为1.5651～2.1592。结论本实验有效地分析了食蟹猴种群的遗传多态性,为今后筛选特异性微卫星位点来建立食蟹猴种群遗传质量监测方法提供了理论依据。     

恒河猴与食蟹猴微卫星DNA多态性的比较分析

目的分析恒河猴和食蟹猴群体间的遗传多样性,确立一种对恒河猴和食蟹猴种群个体的遗传鉴别方法。方法利用聚合酶链反应（PCR）扩增技术采用15个多态性微卫星DNA位点对50只恒河猴和50只食蟹猴个体进行了DNA多态性的分析,对比两群体间等位基因数目差异。结果筛选的15个具有显著多态性的微卫星DNA位点对恒河猴和食蟹猴种群可以进行DNA多态性分析,其等位基因数目均在7个以上,且两群体间有11个位点的等位基因数存在一定的差异。结论利用这些多态性微卫星DNA位点建立一种有效鉴别恒河猴和食蟹猴种群遗传背景的方法具有一定的可行性。     

基于三代测序的食蟹猴Mafa-B等位基因共表达与进化分析

【背景】主要组织相容性复合体(major histocompatibility complex,MHC)的多态性在很大程度上会影响生物医学实验的结果,而且特定的MHC-B等位基因与多种疾病的发展进程密切相关。食蟹猴(Macaca fascicularis,Mafa)是一种开展生物医学研究的重要实验动物,与人类相比,目前尚缺乏对食蟹猴Mafa-B等位基因的综合表征。【目的】获得全面的食蟹猴Mafa-B等位基因信息,鉴定Mafa-B等位基因共表达与进化关系。【方法】基于三代测序获得的食蟹猴MHC-B基因组信息,设计特异性引物扩增33只越南食蟹猴群体中的Mafa-B序列,并结合多种生物信息学方法进行分析。【结果】基于92个Mafa-B等位基因信息,鉴定了65个新的Mafa-B等位基因。其中,8个Mafa-B等位基因与其他地理来源的食蟹猴群体中已报道的序列相同,32个Mafa-B等位基因与其他猕猴物种中已报道的序列相同。此外,鉴定了7个高频Mafa-B谱系和7对共表达的Mafa-B等位基因,并检测到了一个潜在的重组事件。进化分析表明不同地理来源的食蟹猴群体Mafa-B序列具有很高的相似性。【结论】越南食蟹猴群体中共表达的Mafa-B等位基因经历了某些抗原的选择,不同地理来源的食蟹猴群体可能微调其Mafa-B序列以适应病原体的选择压力,本文为食蟹猴MHC遗传背景研究奠定了基础。     

中国圈养食蟹猴TrimCyp基因频率

TRIM 5α在绝大部分的旧大陆猴中扮演抗逆转录病毒的角色,能够限制HIV-1的活性。TRIMCyp融合基因是继TRIM 5α后的另一个抗HIV-1因子研究热点。旧大陆猴的TRIMCyp融合基因是由CypA假基因cDNA序列以逆转录转座的方式插入至TRIM5基因的3’非翻译区形成,而且TRIMCyp融合基因在不同灵长类动物中具有地域、基因频率、基因型以及抗逆转病毒效应的差异。虽然食蟹猴TRIMCyp基因的频率在东南亚几个国家或地区已经被初步调查,但是,中国大陆食蟹猴养殖场的TRIMCyp基因频率还没有明确阐明。该研究对中国5个省11个养殖场共1594个食蟹猴(Macaca fascicularis)繁殖种群随机样本的TRIMCyp基因频率进行了筛查研究,发现各场频率略有差异,从7.65%～19.79%不等,显著低于已报道的菲律宾、马来西亚和印度尼西亚来源食蟹猴的TRIMCyp基因频率(34.85%~100%)。该原因可能是由于后者是建立于1978年的封闭群。对带有TRIMCyp融合基因的个体CypA测序发现带有NE单倍型的食蟹猴个体很少,NE单倍型频率(4.93%)显著低于东南亚三个国家食蟹猴的NE单倍型频率(11.1%～14.3%)纯合子。该研究为进一步开展食蟹猴HIV-1动物模型和发病机制提供了基础信息。     

恒河猴主要组织相容性复合体（MHC）的多态性研究概述

恒河猴是应用最广泛的非人灵长类实验动物,其MHC基因是一个庞大的与免疫功能密切相关的基因群（也称为Mamu基因）,在进化过程形成了Mamu基因不同的存在状态,使得不同个体的Mamu基因在数量和功能上有所差异,同时有些个体还产生了特异性的MHC基因,它的多态性和免疫反应的复杂性相对应。因此,恒河猴MHC多态性的研究,有助于生物科学的发展及指导以恒河猴为动物模型的各种实验。本文主要阐述了恒河猴Mamu基因的结构和功能,以及部分MHC等位基因与疾病的关系,并简要描述了中国恒河猴特异性的MHC基因。     

在缺乏繁殖能力的食蟹猴群体中探究指长比与社会等级以及行为的关系

为了探究笼养食蟹猴Macaca fascicularis指长比与社会等级、行为之间的关系,2016年1月,在江苏省苏州西山中科实验动物有限公司猴场内筛选12只健康雌性食蟹猴,组建新的群体前测量实验个体的食指和无名指指长比率(指长比)。利用人为观察记录法和视频采集法记录群体进食顺序和个体行为,分析群体等级秩序和相应个体的行为表现。研究发现,在食蟹猴抑郁样(低头、蜷缩)、独处、运动、社交、自我护理、攻击等行为中,高、低指长比组的食蟹猴在抑郁样、独处、攻击行为上的差异有统计学意义(P0.05)。研究表明,社会等级强度较高的食蟹猴个体具有较低的指长比比值,在社会活动中具有更强的攻击性;具有较高指长比比值的食蟹猴个体在社会环境下更容易出现抑郁倾向。     

食蟹猴心血管病风险因素与心血管病相关基因在外周血白细胞表达的相关性

研究心血管病风险因素和心血管病相关基因表达的相关性有助于心血管病风险预警和早期诊断研究。该文采用温和的动脉粥样硬化膳食(0.053mg胆固醇/千焦、40%的能量来源于脂肪)喂养中老年雄性食蟹猴(Macaca fascicularis)(12个月),根据传统心血管病风险因素筛选低、高风险食蟹猴,然后采用荧光定量PCR技术检测113个心血管病相关基因在正常组、低风险和高风险组食蟹猴外周血白细胞内的表达差异。结果在食蟹猴外周血白细胞中共检测到65个心血管病相关基因,其中低、高风险组有16个基因相对于正常组表达上调(P<0.05),19个基因表达下调(P<0.05),另外,还有15个基因表达模式特异(P<0.05)。此外,还检测到42个心血管病相关基因在人和食蟹猴外周血白细胞内均有效表达,其中22个基因在两者之间表达模式一致。上述结果为进一步研究心血管病风险预警和早期诊断指标,缩小了基因遴选范围。     

中老年食蟹猴群体自发型糖尿病的筛选

筛选440只中老年偏胖食蟹猴群体中自发糖尿病个体,并探讨食蟹猴群体中糖尿病粗筛的方法。以调查基础血糖值为基础,推断疑似糖尿病血糖值,后经OGTT(口服糖耐量)和尿检结果验证该血糖值是否准确。结果显示中老年偏胖食蟹猴群体血糖值为(3.88±0.98)mmol/L,其中56只食蟹猴血糖值大于5.0mmol/L,被初步定为糖尿病个体。这些个体全部糖耐量异常,且36只(69.23%)出现尿糖阳性,证明血糖值大于5.0mmol/L可作为本群体食蟹猴糖尿病的粗筛标准。由于针对中老年偏胖食蟹猴群体,患病率为12.72%(56/440),高于我国糖尿病患病率(9.7%)。虽然该实验的糖尿病血糖指标并不适用于所有食蟹猴群体,但是该筛选的流程简单快捷,对动物损伤小,可适用于大群体糖尿病的筛选。     

自发性与膳食诱发性食蟹猴2型糖尿病其相关基因的表达比较

采用荧光定量PCR技术对自发性和膳食诱发性T2DM食蟹猴外周血白细胞中36个糖尿病相关基因的表达水平进行分析。在36个基因中,糖尿病组的G6PC、CCR2B、CTLA4等19个基因的表达量与对照组相比存在显著差异(P<0.05),且这些基因在诱发组和自发组中的表达模式基本一致。36个基因中,诱发组基因的表达量普遍高于自发组,但大部分基因表达量在两组中差异不显著,表明诱发性和自发性食蟹猴T2DM模型均可作为糖尿病研究较理想的动物模型。因此,通过高能量膳食诱导的食蟹猴糖尿病模型可以替代自发的糖尿病猴,且基因表达量的变化可为疾病的诊断和治疗提供帮助。     

Multilocus definition of MHC haplotypes in pedigreed cynomolgus macaques (Macaca fascicularis)

Cynomolgus macaques (Macaca fascicularis) are used widely in biomedical research, and the genetics of their MHC (Mhc-Mafa) has become the focus of considerable attention in recent years. The cohort of Indonesian pedigreed macaques that we present here was typed for Mafa-A, -B, and -DR, by sequencing, as described in earlier studies. Additionally, the DRB region of these animals was characterised by microsatellite analyses. In this study, full-length sequencing of Mafa-DPA/B and -DQA/B in these animals was performed. A total of 75 different alleles were observed; 22 of which have not previously been reported, plus 18 extended exon 2 alleles that were already known. Furthermore, two microsatellites, D6S2854 and D6S2859, were used to characterise the complex Mafa-A region. Sequencing and segregation analyses revealed that the length patterns of these microsatellites are unique for each Mafa-A haplotype. In this work, we present a pedigreed colony of approximately 120 cynomolgus macaques; all of which are typed for the most significant polymorphic MHC class I and class II markers. Offspring of these pedigreed animals are easily characterised for their MHC by microsatellite analyses on the Mafa-A and -DRB regions, which makes the cumbersome sequencing analyses redundant.     

Diversity of MHC class I haplotypes in cynomolgus macaques

Cynomolgus macaques are widely used as a primate model for human diseases associated with an immunological process. Because there are individual differences in immune responsiveness, which are controlled by the polymorphic nature of the major histocompatibility (MHC) locus, it is important to reveal the diversity of MHC in the model animal. In this study, we analyzed 26 cynomolgus macaques from five families for MHC class I genes. We identified 32 Mafa-A, 46 Mafa-B, 6 Mafa-I, and 3 Mafa-AG alleles in which 14, 20, 3, and 3 alleles were novel. There were 23 MHC class I haplotypes and each haplotype was composed of one to three Mafa-A alleles and one to five Mafa-B alleles. Family studies revealed that there were two haplotypes which contained two Mafa-A1 alleles. These observations demonstrated further the complexity of MHC class I locus in the Old World monkey.     

MHC class I characterization of Indonesian cynomolgus macaques

Cynomolgus macaques (Macaca fascicularis) are quickly becoming a useful model for infectious disease and transplantation research. Even though cynomolgus macaques from different geographic regions are used for these studies, there has been limited characterization of full-length major histocompatibility complex (MHC) class I immunogenetics of distinct geographic populations. Here, we identified 48 MHC class I cDNA nucleotide sequences in eleven Indonesian cynomolgus macaques, including 41 novel Mafa-A and Mafa-B sequences. We found seven MHC class I sequences in Indonesian macaques that were identical to MHC class I sequences identified in Malaysian or Mauritian macaques. Sharing of nucleotide sequences between these geographically distinct populations is also consistent with the hypothesis that Indonesia was a source of the Mauritian macaque population. In addition, we found that the Indonesian cDNA sequence Mafa-B7601 is identical throughout its peptide binding domain to Mamu-B03, an allele that has been associated with control of Simian immunodeficiency virus (SIV) viremia in Indian rhesus macaques. Overall, a better understanding of the MHC class I alleles present in Indonesian cynomolgus macaques improves their value as a model for disease research, and it better defines the biogeography of cynomolgus macaques throughout Southeast Asia.     

Definition of Mafa-A and -B haplotypes in pedigreed cynomolgus macaques (Macaca fascicularis)

The major histocompatibility complex (MHC) class I B gene/allelic repertoire was investigated in a pedigreed population of cynomolgus macaques of mixed Indonesian/Malaysian origin. The Mafa-B alleles detected in this cohort are mostly specific for a given geographic area, and only a small number of alleles appears to be shared with other populations. This suggests the fast evolution of Mafa-B alleles due to adaptation to new environments. In contrast to humans, the B locus in Old World monkeys displays extensive copy number variation. The Mafa-B and previously defined -A gene combinations segregate in families and thus allowed the definition of extended haplotypes. In many cases it was possible to assign a particular Mafa-I allele to one of these Mafa-A/B haplotypes as well. The presence of a large number of stable haplotypes in this cohort of animals, which was pedigreed for up to eight generations, looks promising for developing discriminative MHC typing tools that are less cumbersome. Furthermore, the discovery of 53 unreported Mafa-B sequences expands the lexicon of alleles significantly, and may help in understanding the complex organisation of the macaque B region.     

Origin of the diversity in DNA recognition domains in phasevarion associated modA genes of pathogenic Neisseria and Haemophilus influenzae

Phase variable restriction-modification (R-M) systems have been identified in a range of pathogenic bacteria. In some it has been demonstrated that the random switching of the mod (DNA methyltransferase) gene mediates the coordinated expression of multiple genes and constitutes a phasevarion (phase variable regulon). ModA of Neisseria and Haemophilus influenzae contain a highly variable, DNA recognition domain (DRD) that defines the target sequence that is modified by methylation and is used to define modA alleles. 18 distinct modA alleles have been identified in H. influenzae and the pathogenic Neisseria. To determine the origin of DRD variability, the 18 modA DRDs were used to search the available databases for similar sequences. Significant matches were identified between several modA alleles and mod gene from distinct bacterial species, indicating one source of the DRD variability was via horizontal gene transfer. Comparison of DRD sequences revealed significant mosaicism, indicating exchange between the Neisseria and H. influenzae modA alleles. Regions of high inter- and intra-allele similarity indicate that some modA alleles had undergone recombination more frequently than others, generating further diversity. Furthermore, the DRD from some modA alleles, such as modA12, have been transferred en bloc to replace the DRD from different modA alleles.     

Characterization of the alternate allelic forms of human PAX7

Six different allelic forms of the human neurogenic and myogenic developmental gene, PAX7, have been identified. They are distinguished by the number of tandem tetranucleotide, GAAG, repeats at a polymorphic site within the second intron of the paired box. Within the same intron, a second polymorphic site was found to have variable numbers of a dinucleotide TG repeat. The alleles are identified by a PCR-based method with oligo primers that span the variable regions of the intron. Several of the alleles include a duplicate copy of the entire paired box. Segregation studies demonstrate that the PAX7 alleles are inherited in a Mendelian fashion and that the duplicate copies of the PAX7 paired box region present in some of the alleles are closely linked. This initial study identified differences in the distribution of PAX7 alleles in DNA from patients with the skeletal muscle myopathy, dermatomyositis. Recognition of genetic polymorphism of PAX7 allows new approaches to understanding the role of PAX7 in myogenesis, neurogenesis, and neuromuscular disorders. Received: 13 July 1999 / Accepted: 29 November 1999     

Rabbit plasma pretransferrin system: evidence for three new alleles

Three additional pretransferrin types have been identified by one-dimensional PAGE technique in New Zealand White and Californian rabbits. The six alleles are designated PrtA, PrtB, PrtC, PrtD, PrtE and PrtF. It is likely that three of these six alleles are identical to those reported previously.     

Genetic characterization of the 44D-45B region of the Drosophila melanogaster genome based on an F2 lethal screen

We have performed an F₂ genetic screen to identify lethal mutations that map to the 44D-45B region of the Drosophila melanogaster genome. By screening 8500 mutagenized chromosomes for lethality over Df(2R)Np3, a deficiency which encompasses nearly 1% of the D. melanogaster euchromatic genome, we recovered 125 lines with lethal mutations that represent 38 complementation groups. The lethal mutations have been mapped to deficiencies that span the 44D-45B region, producing an approximate map position for each complementation group. Lethal mutations were analyzed to determine the phase of development at which lethality occurred. In addition, we have linked some of the complementation groups to P element-induced lethals that map to 44D-45B, thus possibly providing new alleles of a previously tagged gene. Some of the complementation groups represent potentially novel alleles of previously identified genes that map to the region. Several genes have been mapped by molecular means to the 44D-45B region, but do not have any reported mutant alleles. This screen may have uncovered mutant alleles of these genes. The results of complementation tests with previously identified genes in 44D-45B suggests that over half of the complementation groups identified in this screen may be novel. Received: 13 July 1999 / Accepted: 4 November 1999