Comparison of different treatments of rare species in canonical correspondence analysis

运用吕梁山南段植物群落及其环境调查数据,比较研究不同稀有种处理(剔除稀有种、稀有种不做处理与降低稀有种权重3种方法处理)对典范对应分析(CCA)排序结果的影响,并用Spearman秩相关系数检验对应排序轴的相关性。结果表明3种方法的分析效果基本一致,但它们对环境因子的解释趋势有差异。基于环境数据、物种数据和样方数据的排序轴相关分析结果显示:未处理稀有种的CCA与降低稀有种权重的CCA吻合度高于剔除稀有种的CCA与降低稀有种权重的CCA的吻合度,未处理稀有种的CCA与降低稀有种权重的CCA的前4轴呈极显著的一一对应关系;剔除稀有种的CCA和降低稀有种权重的CCA仅在基于环境数据和样方数据分析时前3轴呈极显著的一一对应关系,而在基于物种数据的相关分析时前4轴的对应相关性不显著。从物种-环境关系的解释量上来看,降低稀有种权重的CCA最优,剔除稀有种的CCA和未处理稀有种的CCA次之。结合对应排序轴的相关性分析和物种-环境关系累计解释量来看,这3种稀有种处理方法在准确地揭示物种与环境关系时的顺序依次为:降低稀有种权重>对稀有种不做处理>剔除稀有种。     

稀有种处理对RDA排序结果影响的比较研究

为了解稀有种对RDA排序结果的影响,该研究以北京东灵山华北落叶松林调查数据为例,在RDA排序的基础上,对比分析了未处理稀有种RDA与剔除频度5%、盖度5%的稀有种后RDA排序结果的差异,并用蒙特-卡罗拟合检验分析了二者物种变量和环境变量之间的相关关系,以及用Spearman秩相关系数检验了对应排序轴的相关性。结果表明:(1)蒙特-卡罗拟合检验结果显示未处理稀有种RDA与剔除稀有种RDA各自对应的物种变量和环境变量之间均呈极显著相关关系;(2)从排序轴特征值对物种数据方差以及物种—环境关系解释量来看,剔除稀有种RDA前两排序轴与前四排序轴均有较高的物种-环境关系累积解释量;(3)剔除稀有种前后对应排序轴的Spearman秩相关分析结果表明,尽管未处理稀有种RDA和剔除稀有种RDA在第三轴和第四轴间存在一定的交叉,但二者对应的前四排序轴均呈极显著的一一对应关系(P0.001),相似性极高。总之,结合物种-环境关系的累积解释量及对应排序轴的相关性可知,在环境因子个数较少、研究尺度较小时,使用RDA排序揭示植物种、植物群落和环境因子之间相互作用的生态关系时,剔除稀有种前后RDA排序具有较高吻合性,只是对环境因子的解释趋势稍有差异。     

科尔沁沙地植物群落分布与土壤特性关系的DCA、CCA及DCCA分析

基于科尔沁沙地流动沙丘、半固定沙丘、固定沙丘和草地群落类型24个样地的野外调查,选取11个土壤因子,应用除趋势对应分析法(DCA)、典范对应分析法(CCA)和除趋势典范对应分析法(DCCA)分析沙地植物群落分布与环境因子的关系。结果表明:DCA、CCA和DCCA的物种排序第1轴代表的土壤特性梯度一致,其解释总方差超过33%,即土壤碳氮含量、p H、电导率、容重、粘粉粒等共同的梯度决定了群落生境的变化,影响着沙地植物群落类型的分布格局;3种排序法的物种排序第2轴土壤因子的相关性有较大差异,DCA第2轴仅与土壤细沙含量显著正相关,CCA第2轴与土壤碳氮比和细沙含量显著负相关,DCCA第2轴与土壤碳氮比和细沙含量显著正相关,而与粗沙含量显著负相关。Shannon指数和Simpson指数分别与DCA、CCA和DCCA前2个排序轴存在显著二元线性关系,且Shannon指数的拟合程度好于Simpson指数。3种排序分析方法中,CCA物种排序前两轴的累计解释方差(58.6%)高于DCA和DCCA,因此CCA排序法更适合于沙地植被分布格局研究及其环境的解释。     

南京紫金山野生草本花卉群落数量分类与排序

探寻南京紫金山野生草本花卉群落类型和分布及其与环境的关系,明确影响野生草花分布的主要环境因子和群落特征,以期为南京市野生植物资源经营管理提供科学依据。基于野外样方调查数据,采用平均聚合聚类(Unweighted pair-group method with arithmetic means, UPGMA)、除趋势对应分析(Detrended correspondence analysis, DCA)和典范对应分析(Canonical correspondence analysis, CCA)排序,研究了紫金山野生草本花卉群落的结构组成及影响其结构分异的主导环境因子。结果表明:(1)利用UPGMA将紫金山调查物种划分为4个群丛类型,并在DCA上得到合理解释。(2)CCA排序结果显示,环境因子与排序轴的相关度由大到小依次为郁闭度、坡向、湿度、坡度。第1排序轴与郁闭度最相关,实质是光照强度的不同;第2排序轴与坡向有显著相关性,实质受水热分布影响,这与UPGMA分类结果一致。但整体来看,紫金山野生草本花卉不具有明显的垂直地带性分布特点。(3)物种CCA和UPGMA分类结果表明:植物群落的分布格局受物种分布格局影响,且两者间存在相似性。     

山西太岳山脱皮榆群落的生态梯度分析及环境解释

为了解释山西太岳山脱皮榆(Ulmus lamellosa)群落中物种的分布情况与该群落环境因子之间的相互关系,采用TWINSPAN数量分类和典范对应分析(CCA)与环境因子的变量分离进行讨论。结果表明,TWINSPAN将60个调查样方划分为7种群丛类型,体现了该脱皮榆群落主要以乔木脱皮榆和草本披针叶苔草(Carex lanceolata)为优势种。7种群丛类型与CCA排序结果一致,CCA排序第1轴主要体现了坡位和海拔;坡向与第2排序轴存在显著相关性。Monte Carlo检验结果表明,影响脱皮榆群落物种分布最主要的环境因子是海拔。在环境分离变量解释方面,环境因子解释了39.60%,空间因子解释了7.95%,空间因子与环境因子交互作用解释部分占10.89%。而其中不能解释的部分占41.56%。在该研究区,海拔对植物的分布有较好的解释力,其次是坡位和坡向。     

协惯量分析与典范对应分析在植物群落排序中的应用比较

采用协惯量分析(PCA-CA COIA)和典范对应分析(CCA)两种排序方法, 对北京小龙门林场的黄檗 (Phellodendron amurense)群落进行了分析, 并用Spearman秩相关系数检验了对应排序轴的相关性。两种排序方法得出的结果基本一致, 两者的第一排序轴都反映了海拔高度和坡向对群落分布的影响, 而各自第二、第三排序轴所代表的环境意义有所差异, 并出现了交叉, 但是两者的前3个排序轴均反映了海拔、坡位、土壤厚度和凋落物层厚度的变化趋势, 说明在环境因子个数较少或共线性效应不明显的情况下, 协惯量分析也能达到CCA的分析效果, 并且在排序轴特征值解释量上高于典范对应分析。     

以林相图为基础的不同取样方式对植被排序分析结果的影响

以6种不同方式对林相图中同一样带取样,采用CA、DCA和CCA 3种排序方法,研究了取样方式对排序轴的解释效果、物种与环境因子、环境因子之间、环境因子与坐标轴之间关系的影响.结果表明,样方大小和形状的变化在不同程度上改变了排序结果.大样方和长方形样方都增强了排序轴的解释效果,并对双序图中稀有种、独特种的位置有较大的影响;环境因子中土壤因子对样方的大小和形状都很敏感,坡度、经纬度只对样方大小敏感,坡位、海拔、温度和降水则对样方形状敏感;随着样方面积的增加,海拔、温度和降水的作用降低,而坡向的作用增加.     

秦岭太白红杉球果与种子特性及其与环境的关系

太白红杉(Larix chinensis)是研究秦岭高山林线与环境因子关系的理想树种, 球果与种子特征易受基因和环境的共同影响, 是决定林线迁移和分布格局的关键因素。应用单因素方差、多重比较分析坡向和居群间的球果与种子差异, 采用变异系数和表型分化系数分析球果与种子特征的变异来源, 运用Pearson相关系数、RDA排序分析球果与种子特征与环境因子的关系。结果表明: (1) 南坡和北坡的球果与种子特征差异不显著, 北坡4个球果与种子特征在不同居群间均存在显著差异(P<0.05), 南坡的球果重和平均种子数在不同居群间差异显著(P<0.05); (2) 南坡的变异系数和表型分化系数均高于北坡; 且南北坡球果与种子特征表型分化系数(Vst)均小于0.5, 说明变异主要存在于种群内, 异质的生境是球果与种子差异的重要因素; (3) 环境因子与太白红杉4个球果与种子特征相关系数的绝对值从大到小依次为: 海拔>土壤速效钾>坡向>pH值>土壤碱解氮>土壤有机质>土壤速效磷>坡度; 海拔与球果与种子特征平均相关性最强(r=-0.475), 是限制太白红杉分布的重要因素。研究表明, 球果与种子差异主要来自太白红杉对环境的响应, 海拔是限制太白红杉分布的重要因素。该研究揭示了林线树种太白红杉分布的限制因素, 为生长抑制假说提供了数据支撑, 也为该物种的保护提供理论依据。     

南京外秦淮河河岸带草本花卉群落分类与排序

探索南京外秦淮河河岸带草本花卉群落类型及其分布情况,确定影响草本花卉及群落分布的主要环境因子,为秦淮河生态恢复及河流生态廊道的构建提供科学依据。基于对外秦淮河草本植物群落的实际调查数据,采用平均聚合聚类(UPGMA)进行聚类分析,运用α多样性指数分析不同类型群落的多样性特征,运用除趋势对应分析(DCA)对样点分布进行分析,利用典范对应分析(CCA)对物种和样点进行排序,研究外秦淮河河岸带草本花卉群落组成与分布及其与环境因子的关系。结果表明：(1)利用UPGMA将外秦淮河河岸带调查的草本花卉划分为4种不同类型的群落,与样点DCA排序结果较为一致;(2)群落Ⅳ、群落Ⅲ和群落Ⅱ的物种丰富度指数、Simpson指数、Shannon指数、Pielou均匀度指数表现较好,而群落Ⅰ最差;(3)通过CCA排序可知,第一排序轴与枯落物厚度相关性最强,第二排序轴与坡度显著相关;(4)外秦淮河草本花卉分布与群落分布均受环境因子影响。     

松山自然保护区森林群落的数量分类和排序

根据68个森林群落样方数据,采用双向指示种分析(TW INSPAN)方法,对松山自然保护区的森林群落进行分类和采用除趋势对应分析(DCA)、典范对应分析(CCA)方法进行排序。结果表明:(1)TW INSPAN将该区的森林群落分为13类型;(2)样方的DCA排序及样方和优势种的CCA排序较好地揭示了该区森林群落的分布格局与环境梯度的关系;CCA第一轴明显地反映出森林群落的海拔梯度、枯枝落叶层厚度和土壤深度变化,沿CCA第一轴从左到右,海拔逐渐升高,枯枝落叶层越厚和土壤越深;第二轴与海拔高度和坡度成正相关,而与土壤紧实度成负相关。其中海拔梯度是环境因子中对森林群落起决定性作用的因子。(3)与DCA相比,CCA的排序轴更有利于生态意义的解释,后者能同时反映样方间在种类组成上及环境因子组成上的相似性,表现在排序图中样方较集中,群落间的界线变得较模糊,因此如果排序同分类结合使用,DCA的效果要好于CCA。(4)TW INSPAN分类与DCA和CCA排序的结果,同时表明了该地区森林群落的垂直分布格局。     

Local and regional rarity in a diverse tropical fish assemblage

Because most species in an ecological assemblage are rare, much of the species richness we value is due to taxa with few individuals or a restricted distribution. It has been apparent since the time of ecological pioneers such as Bates and Darwin that tropical systems have disproportionately large numbers of rare species, yet the distribution and abundance patterns of these species remain largely unknown. Here, we examine the diversity of freshwater fish in a series of lakes in the Amazonian várzea, and relate relative abundance, both as numbers of individuals and as biomass, to the occurrence of species in space and time. We find a bimodal relationship of occurrence that distinguishes temporally and spatially persistent species from those that are infrequent in both space and time. Logistic regression reveals that information on occurrence helps distinguish those species that are rare in this locality but abundant elsewhere, from those that are rare throughout the region. These results form a link between different approaches used to evaluate commonness and rarity. In doing so, they provide a tool for identifying species of high conservation priority in poorly documented but species rich localities.     

广西恩城保护区黑叶猴种群数量和保护现状

黑叶猴是栖息于喀斯特石山地区的珍稀濒危灵长类动物,由于非法捕杀和栖息地丧失,种群数量急剧减少。2017年10-12月,我们采用样方法调查恩城国家级自然保护区及其周边地区黑叶猴的种群分布、数量及保护现状,分析其致危因素,为制定有效管理行动计划提供理论依据。本次调查共记录到黑叶猴夜宿地89处,其中有43处夜宿地下方有新鲜排泄物。结合本次调查和访问,确定黑叶猴的种群数量为18群100~105只,包括1只全白化黑叶猴成年雌性个体;其中11群分布在保护区内,7群分布在保护区外。猴群由3~12只个体组成。栖息地破碎化和退化是威胁恩城保护区黑叶猴种群生存的主要因素。     

Geographic variation and dispersal history in Fennoscandian populations of two forest herbs

 Carex digitata and Melica nutans are forest understorey herbs with wide European distributions and their northern range margins in Fennoscandia. The species have closely similar habitat requirements, occur in small populations in old forest stands on base-rich to neutral soils and have restricted dispersal abilities at the present day. This study investigates the structure of allozyme variation (12 and 8 loci, respectively) in material of both species (38 and 37 populations, respectively) from throughout southern Sweden and southern Finland. Both species show a relatively low overall genetic diversity (H_T excluding monomorphic loci=0.17 and 0.18, respectively). The hierarchic structuring of allelic diversity in the species is similar, with a relatively high between-population component of diversity (G_ST=0.36 and 0.37, respectively). Neither of the species shows a clear intraspecific pattern of geographic differentiation. The lack of large-scale patterns of geographic differentiation is not consistent with a simple scenario of discrete and independent waves of immigration into Fennoscandia. However, particularly in M. nutans, a group of populations from a lowland belt across southwestern Finland and southern central Sweden is somewhat differentiated from populations to the north and south. A number of rare alleles in both species are widely, but patchily distributed in low frequencies. Hybridization may account for the scattered occurence of some of the rare alleles in Carex digitata, but cannot explain the distribution of rare alleles in Melica nutans. Received July 23, 2001 Accepted December 6, 2001     

Isolated reefs support stable fish communities with high abundances of regionally fished species

Anthropogenic impacts at isolated and inaccessible reefs are often minimal, offering rare opportunities to observe fish assemblages in a relatively undisturbed state. The remote Rowley Shoals are regarded as one of the healthiest reef systems in the Indian Ocean with demonstrated resilience to natural disturbance, no permanent human population nearby, low visitation rates, and large protected areas where fishing prohibitions are enforced. We used baited remote underwater video systems (BRUVS) to quantify fish assemblages and the relative abundance of regionally fished species within the lagoon, on the slope and in the mesophotic habitat at the Rowley Shoals at three times spanning 14 years and compared abundances of regionally fished species and the length distributions of predatory species to other isolated reefs in the northeast Indian Ocean. Fish assemblage composition and the relative abundance of regionally fished species were remarkably stable through time. We recorded high abundances of regionally fished species relative to other isolated reefs, including globally threatened humphead Maori wrasse (Cheilinus undulatus) and bumphead parrotfish (Bolbometopon muricatum). Length distributions of fish differed among habitats at the Rowley Shoals, suggesting differences in ontogenetic shifts among species. The Cocos (Keeling) Islands typically had larger‐bodied predatory species than at the Rowley Shoals. Differences in geomorphology, lagoonal habitats, and fishing history likely contribute to the differences among remote reefs. Rowley Shoals is a rare example of a reef system demonstrating ecological stability in reef fish assemblages during a time of unprecedented degradation of coral reefs.     

A new species of Peucoglyphus Bernhauer from New Guinea (Coleoptera, Staphylinidae, Staphylininae)

Peucoglyphus kensp. n., a new species from New Guinea is described. Adding the new species, this rare Wallacean genus from the tribe Staphylinini (subtribe Philonthina) currently includes five species. An updated identification key for the genus is provided.     

The mycetophagidae (coleoptera) of the maritime provinces of Canada

The Mycetophagidae (hairy fungus beetles) of the Maritime Provinces of Canada are surveyed. Seven species in the genera Mycetophagus, Litargus, and Typhaea are found in the region. Six new provincial records are reported including Mycetophagus punctatus and Mycetophagus flexuosus, whichare newly recorded in the Maritime Provinces. The distribution of all species is mapped, colour habitus photographs of all species are figured, and an identification key to species is provided. The discussion notes that four of the species found in the region are apparently rare, possibly due to the history of forest management practices in the region; a situation similar to that of a significant proportion of other saproxylic beetles found in the Maritime Provinces.     

The role of anthropogenic dispersal in shaping the distribution and genetic composition of a widespread North American tree species

Dispersal and colonization are among the most important ecological processes for species persistence as they allow species to track changing environmental conditions. During the last glacial maximum (LGM), many cold‐intolerant Northern Hemisphere plants retreated to southern glacial refugia. During subsequent warming periods, these species expanded their ranges northward. Interestingly, some tree species with limited seed dispersal migrated considerable distances after the LGM ~19,000 years before present (YBP). It has been hypothesized that indigenous peoples may have dispersed valued species, in some cases beyond the southern limits of the Laurentide Ice Sheet. To investigate this question, we employed a molecular genetics approach on a widespread North American understory tree species whose fruit was valued by indigenous peoples. Twenty putative anthropogenic (near pre‐Columbian habitations) and 62 wild populations of Asimina triloba (pawpaw), which produces the largest edible fruit of any North American tree, were genetically assayed with nine microsatellite loci. Putative anthropogenic populations were characterized by reduced genetic diversity and greater excess heterozygosity relative to wild populations. Anthropogenic populations in regions that were glaciated during the LGM had profiles consistent with founder effects and reduced gene flow, and shared rare alleles with wild populations hundreds of kilometers away (mean = 723 km). Some of the most compelling evidence for human‐mediated dispersal is that putative anthropogenic and wild populations sharing rare alleles were separated by significantly greater distances (mean = 695 km) than wild populations sharing rare alleles (mean = 607 km; p = .014). Collectively, the genetic data suggest that long‐distance dispersal played an important role in the distribution of pawpaw and is consistent with the hypothesized role of indigenous peoples.     

How to look like a mallow: evidence of floral mimicry between Turneraceae and Malvaceae

Abundant, many-flowered plants represent reliable and rich food sources for animal pollinators, and may even sustain guilds of specialized pollinators. Contrastingly, rare plants need alternative strategies to ensure pollinators' visitation and faithfulness. Flower mimicry, i.e. the sharing of a similar flower colour and display pattern by different plant species, is a means by which a rare species can exploit a successful model and increase its pollination services. The relationship between two or more rewarding flower mimic species, or Müllerian mimicry, has been proposed as mutualistic, in contrast to the unilaterally beneficial Batesian floral mimicry. In this work, we show that two different geographical colour phenotypes of Turnera sidoides ssp. pinnatifida resemble co-flowering Malvaceae in colour as seen by bees' eyes, and that these pollinators do not distinguish between them when approaching flowers in choice tests. Main pollinators of T. sidoides are bees specialized for collecting pollen in Malvaceae. We demonstrate that the similarity between at least one of the geographical colour phenotypes of T. sidoides and co-flowering Malvaceae is adaptive, since the former obtains more pollination services when growing together with its model than when growing alone. Instead of the convergent evolution pattern attributed to Müllerian mimicry, our data rather suggest an advergent evolution pattern, because only T. sidoides seems to have evolved to be more similar to its malvaceous models.     

Buzz pollination in eight bumblebee-pollinated Pedicularis species: does it involve vibration-induced triboelectric charging of pollen grains?

MethodsEight sympatric buzz-pollinated species of Pedicularis that share bumblebee pollinator species were studied, giving a rare opportunity to compare sonication behaviour of a shared pollinator on different plant species.ConclusionsSonication behaviour of B. friseanus differs among Pedicularis species, not only because worker bees assort themselves among plant species by body size, but also because bees of a given size adjust the buzz frequency to achieve a vibration velocity corresponding to the floral traits of each plant species. These findings, and the floral traits that characterize these and other buzz-pollinated species, are compatible with the hypothesis of vibration-induced triboelectric charging of pollen grains.     

Species delimitation and biogeography of two fir species (Abies) in central China: cytoplasmic DNA variation

It remains unclear how speciation history might contribute to species-specific variation and affect species delimitation. We examined concordance between cytoplasmic genetic variation and morphological taxonomy in two fir species, Abies chensiensis and A. fargesii, with overlapping distributions in central China. Range-wide genetic variation was investigated using mitochondrial (mt) and plastid (pt) DNA sequences, which contrast in their rates of gene flow. Four mtDNA haplotypes were recovered and showed no obvious species' bias in terms of relative frequency. In contrast, a high level of ptDNA variation was recorded in both species with 3 common ptDNA haplotypes shared between them and 21 rare ptDNA haplotypes specific to one or other species. We argue that the lack of concordance between morphological and molecular variation between the two fir species most likely reflects extensive ancestral polymorphism sharing for both forms of cytoplasmic DNA variation. It is feasible that a relatively fast mutation rate for ptDNA contributed to the production of many species-specific ptDNA haplotypes, which remained rare due to insufficient time passing for their spread and fixation in either species, despite high levels of intraspecific ptDNA gene flow. Our phylogeographic analyses further suggest that polymorphisms in both organelle genomes most likely originated during and following glacial intervals preceding the last glacial maximum, when species distributions became fragmented into several refugia and then expanded in range across central China.