Speculations on the origin of the genetic code

The most primitive code is assumed to be a GC code: GG coding for glycine, CC coding for proline, GC coding for alanine, CG coding for arginine. The genetic code is assumed to have originated with the coupling of glycine to its anticodon CC mediated by a copper-montmorillonite. The polymerization of polyproline followed when it was coupled to its anticodon GG. In this case the aminoacyl-tRNA synthetase was a copper-montmorillonite. The first membrane is considered to be a sheet formed from polyglycine. As the code grew more complicated, the alternative hydrophobic-hydrophilic polypeptide (alanine-arginine) was coded for by the alternating CG copolymer. This alternating polypeptide (ala-arg) began to function as both a primitive membrane and as an aminoacyl-tRNA synthetase. The evolution of protein structure is tightly coupled to the evolution of the membrane. The a helix was evolved as lipids became part of the structure of biological membranes. The membrane finally became the fluid mosaic structure that is now universal.Based on a presentation made at a workshop-Aminoacyl-tRNA Synthetases and the Evolution of the Genetic Code-held at Berkeley, CA, July 17–20, 1994     

Speculations on the origin and evolution of metabolism

An autotrophic origin of metabolism is described, which requires clays, transition state metals, disulfide and dithiols, U.V. and cyanide ion. A general scheme is proposed, involving the fixation of CO2 and N2, for the evolution of intermediary metabolism based on the evolution of a complex system from a simple one. The basic conclusion is that metabolism could have evolved from a simple environment rather than from a complex one.     

Speculations on the origin and evolution of the genus Leishmania

Recently two hypotheses have been proposed for the evolution of Leishmania involving respectively a Neotropical or Paleartic origin for the species. Here an alternative proposal on the phylogeny of Leishmania based on the major divisions within the genus is presented. In this hypothesis a Neotropic origin is retained for L. (Viannia) and Paraleishmania, a recently described section within the genus Leishmania, while an African origin is proposed for L. (Leishmania) and possibly Sauroleishmania. The current distribution of Leishmania in the Neotropics is explained as the product of multiple introductions of Leishmania parasites into the New World. Problems with organismal identity in Sauroleishmania and the use of molecular sequence data in inferring phylogenies are also discussed.     

The influence of visual display terminal use on the physical and mental conditions of administrative staff in Japan

Visual display terminals (VDT) are standard equipment for many office workers. Their use, however, may increase the risk of developing adverse conditions related to vision, the musculoskeletal system, and mental health. We carried out a survey among 3070 workers aged 18 to 67 years (mean, 39.9 years) at a prefectural administrative office, in which 76% of subjects were visual display terminal (VDT) users. We examined the relationship between duration of daily VDT use and eyestrain, neck or upper extremity pain, back pain, and mental health, and estimated the effect of breaks and rest during VDT work on these symptoms. The 12-item General Health Questionnaire (GHQ-12: total scores ranged from 0 to 12) was used to identify potential poor mental health status, and subjects with 4 or more were considered to have symptoms of psychological distress. Seventeen percent of subjects reported eyestrain, 19.1% reported upper extremity pain, 11.6% reported back pain, and 17% of subjects had GHQ-12 scores of 4 or higher. Logistic regression analysis showed that duration of daily VDT use and lack of breaks and rest during VDT work were significantly associated with eyestrain, neck or upper extremity pain, back pain, and psychological distress. In order to protect users from the adverse effects associated with VDT work, reducing daily VDT exposure, taking breaks, and rest during VDT work are important.     

Speculations on enigmatic structures in relation to associated copepod phylogeny

A median exoskeletal structure, lying between the maxillipeds, is described in the female of Lichomolgides cuanensis (Poecilostomatoida: Lichomolgidae) a copepod symbiont of the compound ascidian Trididemnum tenerum. This structure is compared with the intermaxillipedal process of the primitive copepod order Platycopioida. It is tentatively suggested that despite the evolutionarily advanced status of poecilostomatoids, the structure might represent a plesiomorphic feature of considerable antiquity. Some speculative implications for the phylogeny of associated copepods are briefly discussed.     

Termination of a visual search with large display size effects

The ability to locate an object in the visual field is a collaboration of at least three intermingled processes: scanning multiple locations, recognizing the object sought (the target), and ending the search in cases when the target is not found. In this paper, we focus on the termination rule. Using distribution analyses, it is possible to assess the probability of termination conditional on the number of locations examined. The results show that on some trials without target, the participants carried out more comparisons than there are objects in the display; in other conditions, they carried out fewer comparisons than objects. Because there were very few errors, the premature stops were not pure guesses. We present models to account for these findings. The distributions of terminations help determine the slopes of the functions relating response time to set size.     

Sensory influences on physical design of a visual display

Physical design features of animal visual signals have rarely been analysed. The parameters of motion patterns found in the visual displays of the iguanid lizard, Anolis auratus, were analysed by comparing a long-range display directed at unattentive viewers with a short-range display directed at attentive viewers. Movements in the long-range display were of higher amplitude, increasing the distance over which the display can be resolved. The initial portion of the long-range display contained movements of extremely high acceleration and velocity, which have been shown to be extremely effective at drawing attention. It is shown that the physical properties of a visual signal depend on the context in which it is used, and the response properties of the visual system.     

Structure and origin of axonal terminals innervating neurons of the vestibular ganglia

Structural organization of the frog axonal terminals, realizing the synaptic contact with neurons of the vestibular ganglion have been studied electron microscopically. Two kinds of axonal terminals are revealed. They differ in quantitative and qualitative composition of their synaptic vesicles convergated simultaneously in various combinations to the ganglious neurons. Using the axonal retrograde transport of horseradish peroxidase, the nature of these axonal terminals is analysed. Their source is demonstrated to be neurons of the reticular formation and ventral vestibular nucleus of the medulla oblongata, as well as Purkinje's cells of the cerebellum.     

Visual load of working with visual display terminals--introduction of VDT to newspaper editing and visual effect.

In the Japanese newspaper industry, since the late 1970s, computerization has been started in large scale. The system, called Computerized Typesetting System (CTS), has been introduced. With this system, all information in the newspaper is input into a computer, called up on a cathode ray display (CRT) to edit, and then output to film or printing plates by CTS. Thus, the work of newspaper production has undergone a major transformation from industrial work to clerical work. It was reported that newspaper production staff working with VDTs complained more than staff working with the older key system about visual and physical problems which affected their job and their daily life. The complaint rates were highest for editors, who used VDT constantly throughout the day. This study was performed to clarify the health impact of VDT use and to prevent health disorders caused by the introduction of CTS. It is concluded that 5 m corrected vision and sphere refraction of CTS workers who used CTS over 2 or 4 hr daily, significantly became worse in a year after the introduction. Therefore, it is indicated that the control of CTS work time is important to prevent the visual disorder.     

Neointimal hyperplasia associated with the use of u-clip

The U-Clip (Coalescent Surgical, Sunnydale, CA USA) allows the surgeon to create an interrupted anastomosis in the same amount of time that is required for a continuous anastomosis with the elimination of knotting. Its use is indicated especially in minimally invasive surgery. We describe a case of a patient in which the proximal anastomosis was performed by interrupted suture with Coalescent U-Clip anastomotic device. Six months later, he presented with stenosis of the anastomosis, and intravascular ultrasound showed anastomotic neointimal hyperplasia.     

Speculations on the growth strategy of prosthecate bacteria

Appendaged bacteria with stalks that are extensions of the cell wall have had to solve the problems of growing the stalk as a tube of constant diameter and of partitioning their chromosomes into the asymmetric daughter cells. Although no experimental proof is given, it is suggested that both processes depend on the attachment of the chromosome origin and terminus to the wall at special terminal sites that contain the basal body (motor assembly) for flagellar motion.     

Speculations on the evolution of the genetic code II

An evolutionary scheme is postulated in which a primitive code, involving only guanine and cytosine, would code for glycine (GG), alanine (GC), arginine (CG) and proline (CC). From each of these amino acids and their codons, there evolves a family of related amino acids as the code expands. The four families are: (1)alanine valine, leucine, isoleucine, phenylalanine, tyrosine, methionine and tryptophane; (2)proline, threonine and serine; (3)arginine, lysine, and histidine; (4)glycine, serine, cysteine, glutamic acid, glutamine, aspartic acid and asparagine. Except for the glycine relation to glutamic acid and aspartic acid, all amino acids are related by chemical similarities in their side chains. Glycine not having a side chain would permit a more complex set of substitutions.     

Speculations on the evolution of the genetic code.

An evolutionary scheme is postulated in which the bases enter the genetic code in a definite temporal sequence and the correlated amino acids are assigned definite functions in the evolving system. The scheme requires a singlet code (guanine coding for glycine) evolving into a doublet code (guanine-cytosine doublet coding for gly (GG), ala (GC), arg (CG), pro (CC). The doublet code evolves into a triplet code. Polymerization of nucleotides is thought to have been by block polymerization rather than by a template mechanism. The proteins formed at first were simple structural peptides. No direct nucleotide-amino acid stereo-chemical interaction was required. Rather an adaptor-type indirect mechanism is thought to have been functioning since the origin.