几种全长cDNA文库构建方法比较

全长cDNA文库是高效、大规模获得基因全序列信息的一条有效途径,尤其是对基因组庞大,近期内尚不能进行全基因组测序的生物来说,是一条开展功能基因组研究的重要途径。本文对几种全长cDNA文库的构建方法进行了概述,针对各种方法的原理及优缺点做了分析、比较,并结合本实验室的结果,重点介绍了Cap-trapper法在小麦全长cDNA文库中的应用及文库中全长基因比例判定方法。     

小麦网腥黑粉菌冬孢子总DNA提取方法比较

目的：研究提取不同时期小麦网腥黑粉菌冬孢子总DNA的最佳方法。方法：应用改良过的四种方法（CTAB法、SDS-CTAB法、SDS法和尿素法）对小麦网腥黑粉菌冬孢子总DNA进行提取。结果：提取当年小麦网腥黑粉菌冬孢子DNA,纯度（OD260/OD280）：CTAB法〉SDS-CTAB法〉SDS法〉尿素法=1.876〉1.7815〉1.7789〉1.6095;产率（μg/g）：SDS-CTAB法〉SDS法〉尿素法〉CTAB法=796.25〉664〉306〉291.5。提取15年的小麦网腥黑粉菌冬孢子DNA,纯度（OD260/OD280）：CTAB法〉SDS-CTAB法〉SDS法〉尿素法=1.91795〉1.8876〉1.65985〉1.55925;产率（μg/g）：尿素法〉CTAB法〉SDS法〉SDS-CTAB法=1529.25〉799〉687.25〉372.5。结论：SDS-CTAB法是提取当年小麦网腥黑粉菌冬孢子DNA的最佳方法。CTAB法是提取15年的小麦网腥黑粉菌冬孢子DNA的最佳方法。     

四种提取芸芥基因组DNA方法的比较

以芸芥为材料 ,分别用CTAB法、SDS法、尿素法、NaOH法四种方法对芸芥基因组DNA进行了提取 ;并用紫外光分光光度计法、琼脂糖电泳法和RAPD分析法对所提取的DNA进行检测 ,将它们在DNA的产量、质量和耗时、耗费等方面的优缺点进行比较 ,以便在实际工作中根据不同的试验条件选取最合适的提取方法。通过四种方法的比较 ,研究认为尿素法是芸芥基因组DNA的最佳提取方法。     

A comparison of four methods for measuring roots of field crops in three contrasting soils

Rooting measurements have been made at different growth stages for sugar beets (1987) and for cereals (1988) on three different sites using four different root measurement techniques: (a) the core method where roots were extracted and root length is directly measured, (b) the core-break method where the visible roots were counted on the faces of a broken soil column, (c) the trench profile wall method where the number of visible roots were counted and the root length density was estimated on a profile wall, and (d) the monolith method where the roots were extracted from monoliths dug out from a profile wall. The calibration curves between the field methods and the extraction methods were not linear, and regression coefficients differed significantly between different sites, crops and between fields with different agronomic management, e.g. irrigation and liquid manure application. Differences between growth stages were comparably low compared with those found between locations. Root length densities obtained with the trench profile method were on average 10-fold lower in the sand brown earth, 6-fold lower in the vertisol and 4 times lower in the cambisol compared to data obtained with the core method. It is therefore concluded that the core-break method and the trench profile wall method deliver no reliable data for comparing rooting intensities between different soils and between different crops if they are not calibrated with an extraction method for each site and crop.     

呼肠孤病毒科的系统发育分析

运用邻接法(neibor-joining,NJ)、最大似然法(maximum likehood,ML)对国际病毒分类委员会(Intemational Committee on Taxonomy of Viruses,ICTV)第八次报告中所有已报道的呼肠孤病毒科外层衣壳蛋白序列进行了系统发育分析.结果表明:两种方法构建的系统树拓扑结构基本一致,尽管部分分支略有差异,但都能够反映出科内各属的系统发育关系,分析结果支持了该科的分类地位.同时还比较两种建树方法的异同点,并对建树产生的差异原因作了探讨.     

三种提取苹果绵蚜基因组DNA方法的比较

参考国内外昆虫基因组DNA提取的常用方法,选取KAc法、氯仿-异戊醇法和盐析法3种方法对苹果绵蚜(Eriosoma lanigerum)基因组DNA进行提取.通过基因组DNA直接琼脂糖凝胶电泳、SSR引物扩增产物的琼脂糖凝胶电泳和聚丙烯酰胺凝胶电泳检测,对3种方法所提基因组DNA的质量进行了比较,并综合分析了提取所需时间及所用试剂的毒性大小等.结果表明,盐析法操作程序较简便快捷,节时省工,可得较好质量的DNA样本,且对试验操作人员无伤害,是一种值得推广应用的基因组DNA提取方法.     

A numerical study of oxygen diffusion in a spherical cell with the Michaelis-Menten oxygen uptake kinetics

A numerical method is presented for the solution of reaction diffusion systems in biology. The method is used to re-examine the oxygen diffusion in a spherical cell with the Michaelis-Menten oxygen uptake kinetics.     

鄂西北产鱼腥草提取物体外抗氧化性的四种化学方法评价

采用α-脱氧核糖法、邻苯三酚自氧化法、DPPH法、铁氰化钾还原法等4种国内外常用的体外抗氧化活性检测方法,对鄂西北产鱼腥草石油醚提取物、无水乙醇提取物、乙酸乙酯提取物、三氯甲烷提取物的抗氧化性进行化学评价,结果表明鱼腥草提取物具有一定抗氧化性,其浓度与其抗氧化活性强弱顺序一致。     

灭蚊真菌一贵阳腐霉对植物的安全性试验

The aim of this study is to investigate whether Pythium guiyangense,a mosquito-killing fungus isolated in Guiyang,Guizhou Province of China in 1994,is pathogenic to plants.Six common crops,Cucumis sativa,Lycopersicon esculentum,Capsicum annuum,Nicotiana tabacum,Brassica campestris and Oryza sativa were used as subjects for test.Zoospores of the fungus were used to infect the plants with soil inoculation method,caudex injection method and foliage spray method.Both positive control(using P.aphanidermatum)and negative control(using sterile water)were set up in all the experiments.The results showed that no infection was found on the tested plants in soil inoculation experiments.In caudex injection test,callus grew around the wounded tissue in most of the plants.Brownish rottenness could be found only in the injected wounds in a few plants,probably caused by saprophytic bacteria or other fungi,and the germ-carrying plants grew normally.No abnormal appearance was found on the six crops in foliage spray test.It was demonstrated that P guiyangense could hardly infect plants in nature,and was a safe and promising agent for mosquito biological control.     

康氏木霉基因组DNA提取方法的比较研究

采用3种常规DNA提取方法提取瑞氏木霉基因组DNA。结果表明:冷冻研磨CTAB法更适合此真菌DNA的提取,试剂盒提取的总DNA纯度和浓度也较高,但是价格昂贵,饱和酚抽提法提取的DNA浓度不高,且易有降解现象,不适合分子生物学操作的要求。     

Determination of chemical biodegradation by direct and indirect methods

Summary Degradation of 10 organic chemicals by pre-acclimated microorganisms in BOD dilution water was determined directly by UV spectrophotometry and indirectly by a modified BOD method. Residual chemical concentrations were periodically measured and pseudo-first-order biodegradation rate constants (k ₁) were calculated. Thek ₁ spectrophotometry values ranged from 0.006/h to 0.077/h andk ₁-BOD values from 0.002/h to 0.043/h for 1-methylnaphthalene and indole, respectively. The ratios ofk spectrophotometry to k₁-BOD were between 1.5 for salicylic acid and 3.0 for 1-methylnaphthalene with a mean of 2.7. A significant (=0.001) linear correlation (r ²=0.854,F=46.630) existed between the two sets of rate constants. Results from this study suggest that the modified BOD method may be used to estimate chemical biodegradation rates in synthetic media.     

灭蚊真菌－贵阳腐霉对植物的安全性试验

The aim of this study is to investigate whether Pythium guiyangense, a mosquito-killing fungus isolated in Guiyang, Guizhou Province of China in 1994, is pathogenic to plants. Six common crops, Cucumis sativa, Lycopersicon esculentum, Capsicum annuum, Nicotiana tabacum, Brassica campestris and Oryza sativa were used as subjects for test. Zoospores of the fungus were used to infect the plants with soil inoculation method, caudex injection method and foliage spray method. Both positive control (using P. aphanidermatum) and negative control (using sterile water) were set up in all the experiments. The results showed that no infection was found on the tested plants in soil inoculation experiments. In caudex injection test, callus grew around the wounded tissue in most of the plants. Brownish rottenness could be found only in the injected wounds in a few plants, probably caused by saprophytic bacteria or other fungi, and the germ-carrying plants grew normally. No abnormal appearance was found on the six crops in foliage spray test. It was demonstrated that P. guiyangense could hardly infect plants in nature, and was a safe and promising agent for mosquito biological control.     

超滤法和盐析法粗提基因工程干扰素其比活的比较

我们的工作是应用ＹＦ２ＰＳＫ３１Ｒ型超滤器超滤粗提基因工程干扰素,并与盐析法对比。超滤法简便快速条件温和,超滤后干扰素平均收率为９３．９５％±２．４８％,盐析法则为７５．９３％±３．９％,前者比后者提高１８．０２％,差异显著。比活前为：４．４５５Ｅ６±７．５８Ｅ５ＩＵ／ｍｇ蛋白,后者为：１．６１１７Ｅ６±２．０７９Ｅ５ＩＵ／ｍｇ蛋白,差异也是显著的     

花生DNA提取方法比较

目的:旨在筛选优化花生DNA提取方法。方法:采用SDS法、改进SDS法;CTAB法、改进CTAB法四种方法对花生叶DNA进行提取,并从电泳结果、纯度、得率、等方面对其进行比较研究,从而确定花生DNA提取适用流程;结果:CTAB法DNA平均得率为55.0μg/g.Fw,略小于SDS的60.3,但其A260/A280平均值为1.81,比SDS的1.55更接近标准要求。结论:综合考虑CTAB法是提取花生DNA的最佳方法,可提取到较高质量的DNA,符合分子检测要求;虽然改良CTAB法也相对好于SDS法,但由于步骤增加反而加剧DNA降解。     

大青杨叶片总RNA的快速提取方法

目的:寻求快速提取大青杨叶片总RNA的方法。方法:分别用改良CTAB法、改良SDS法、改良TRIzol法及某公司总RNA提取试剂盒提取大青杨叶片总RNA,并用紫外光谱分析、凝胶电泳方法对提取的总RNA进行鉴定。结果:用改良CTAB法和改良TRIzol法能有效地去除蛋白及多糖,提取到的总RNA纯度高,D260nm/D280nm分别为2.05和1.78,RNA的完整程度优于试剂盒法。结论:改良CTAB法为大青杨叶片总RNA的最佳提取方法。     

干、湿化学法在乳糜血中的应用比较

目的探讨乳糜血对干、湿化学法检测结果的影响,以期找到一种适合于在乳糜血中应用的检测方法。方法分别用干、湿化学法检测乳糜血中总蛋白、血糖,比较两种方法检测结果差异。结果湿化学法测定结果高于乙醇处理法(P0.05),干化学法与乙醇处理法结果比较差异无显著性(P0.05)。结论在乳糜血检测中干性化学法与湿性化学法比较更接近真实值。     

鸟类种群密度调查和估算方法初探

为探讨不同调查方法对鸟类种群密度估计的差异,于2010年12月15~20日,对云南省昆明市嵩明县嘉丽泽地区常见的四种鸟(白脊鹡鸰Motacilla alba、黑喉石駑(嶋)Saxicola torquata、白鹭Egretta garzetta、苍鹭Ardea cinerea)进行调查研究.之后分别采用无距离样线法、固定距离样线法以及可变距离样线法(Distance软件)分析,得出其相对丰富度、种群密度等相关信息.对比三种样线法在鸟类数量估计方面的优劣,认为无距离样线法不能真实地反映鸟类数量的多少,固定距离样线法结合样带计数法往往低估鸟类种群密度,呵变距离样线法结合Distance软件分析是相对更为先进和精准的种群密度估算方法.对如何进一步利用Distance软件的分析结果也进行了初步探讨.     

大量Pichia pastoris酵母基因组DNA的提取

巴斯德毕赤酵母(Pichia pastoris)表达系统是目前应用最广泛的外源基因表达系统之一,提取酵母基因组是研究酵母必需的方法之一.针对常用的几种毕赤酵母基因组DNA的制备方法进行比较,并对玻璃珠法进行改进.改良的玻璃珠法不但具有省时省力、操作简便且结果稳定的优,适合于大量DNA的提取.该方法的革新将对酵母重组子的PCR鉴定检测及表达产品DNA相关检测提供更高效稳定的保证,将成为酵母等类似微生物基因组DNA制备的首选方法.     

生物法合成丙烯酸的研究进展

丙烯酸是一种重要的化工原料,被广泛应用于涂料、超吸附材料等领域。目前丙烯酸的获得主要通过丙烯氧化,但由于石油资源日渐枯竭以及生产过程造成的环境问题,利用生物质资源生产丙烯酸已成为研究热点。介绍了丙烯酸的性质及其在工业上的应用,并详细综述了生物法制备丙烯酸的研究进展。根据丙烯酸生产中是否应用传统的化工过程,将其分为半生物合成和全生物合成。半生物法主要包括乳酸化学法脱水以及丙烯腈、丙烯酰胺的生物转化;全生物法主要包括乳酸生物法脱水、3-羟基丙酸途径、糖直接发酵法以及DMSP(二甲基巯基丙酸内盐)途径。由于乳酸发酵的工艺成熟、原料易得,因此对乳酸脱水进行了重点介绍,其中生物法脱水符合可持续发展的要求,对其进行了详细介绍。同时还分析了各种方法的优缺点,探讨了利用生物质资源生产丙烯酸的研究趋势。