共查询到20条相似文献，搜索用时 15 毫秒
1.
Sbastien Devillard Thibaut Jombart Franois Lger Dominique Pontier Ludovic Say Sandrine Ruette 《Journal of Zoological Systematics and Evolutionary Research》2014,52(2):154-162
Phenotypic variation in hybridizing species or subspecies is a prerequisite for allowing conservation ecologists and wildlife managers to identify parental populations and their hybrids in the field. We assessed the reliability of a set of eight morphological (body size and pelage characters) and four anatomical criteria (skull and intestine morphometric measurements) to distinguish between 302 French specimens classified as wildcat, domestic cat or hybrid on the basis of a Bayesian analysis (STRUCTURE) of their multilocus microsatellite genotypes. This aim was achieved by performing a set of multivariate analyses on morphological, anatomical and genetic data sets (Hill and Smith's analysis, co‐inertia analysis and discriminant analysis of principal components). Wildcats and domestic cats were very satisfactorily distinguished, even when using simple non‐invasive morphological criteria easily usable in the field like the morphology of the tail, dorsal line or flank stripes. Using anatomical instead of morphological characters slightly increased the discriminating power. Many more difficulties arose when we tried to distinguish hybrid specimens from both wildcat and domestic ones. Anatomical characters performed better than morphological ones in recognizing hybrids, but the assignment success rate remained very low, about 31.6% and 1.5%, respectively. Overall, the most discriminating characters were two continuous, derived anatomical characters: the cranial index followed by the intestinal index. Classification of specimens in three classes based on their microsatellite genotypes appeared to be inadequate for identifying hybrid specimens, as hybrid specimens seemed to be distributed along an anatomical continuum. With this observation in mind, we assessed the linear relationships between a proxy of the individual level of hybridization (qik) and the cranial and intestinal indices, respectively. Both relationships were highly significant. The greatest correlation was found with the cranial index (R² = 60.4%). Altogether, our results suggest that future work should be geared towards enhancing the measure of hybridization using more discriminating molecular markers and improving morphometric skull measurements through the use of modern geometric morphometric methods, using landmarks rather than skull dimension. 相似文献
2.
Marie‐Pauline Beugin Olivier Salvador Guillaume Leblanc Guillaume Queney Eugenia Natoli Dominique Pontier 《Ecology and evolution》2020,10(1):263-276
European wildcat (Felis silvestris silvestris) populations are fragmented throughout most of the whole range of the subspecies and may be threatened by hybridization with the domestic cat F.s. catus. The underlying ecological processes promoting hybridization remain largely unknown. In France, wildcats are mainly present in the northeast and signs of their presence in the Pyrenees have been recently provided. However, no studies have been carried out in the French Pyrenees to assess their exposure to hybridization. We compared two local populations of wildcats, one living in a continuous forest habitat in the French Pyrenees, the other living in a highly fragmented forest‐agricultural landscape in northeastern France to get insights into the variability of hybridization rates. Strong evidence of hybridization was detected in northeastern France and not in the Pyrenees. Close kin in the Pyrenees were not found in the same geographic location contrary to what was previously reported for females in the northeastern wildcat population. The two wildcat populations were significantly differentiated (FST = 0.072) to an extent close to what has been reported (FST = 0.103) between the Iberian population, from which the Pyrenean population may originate, and the German population, which is connected to the northeastern population. The genetic diversity of the Pyrenean wildcats was lower than that of northeastern wildcat populations in France and in other parts of Europe. The lower hybridization in the Pyrenees may result from the continuity of natural forest habitats. Further investigations should focus on linking landscape features to hybridization rates working on local populations. 相似文献
3.
B. Nussberger M. P. Greminger C. Grossen L. F. Keller P. Wandeler 《Molecular ecology resources》2013,13(3):447-460
Introgression can be an important evolutionary force but it can also lead to species extinction and as such is a crucial issue for species conservation. However, introgression is difficult to detect, morphologically as well as genetically. Hybridization with domestic cats (Felis silvestris catus) is a major concern for the conservation of European wildcats (Felis s. silvestris). The available morphologic and genetic markers for the two Felis subspecies are not sufficient to reliably detect hybrids beyond first generation. Here we present a single nucleotide polymorphism (SNP) based approach that allows the identification of introgressed individuals. Using high‐throughput sequencing of reduced representation libraries we developed a diagnostic marker set containing 48 SNPs (Fst > 0.8) which allows the identification of wildcats, domestic cats, their hybrids and backcrosses. This allows assessing introgression rate in natural wildcat populations and is key for a better understanding of hybridization processes. 相似文献
4.
Alina von Thaden Carsten Nowak Annika Tiesmeyer Tobias E. Reiners Paulo C. Alves Leslie A. Lyons Federica Mattucci Ettore Randi Margherita Cragnolini Jos Galin Zsolt Hegyeli Andrew C. Kitchener Clotilde Lambinet Jos M. Lucas Thomas Mlich Luana Ramos Vinciane Schockert Berardino Cocchiararo 《Molecular ecology resources》2020,20(3):662-680
The genomic era has led to an unprecedented increase in the availability of genome‐wide data for a broad range of taxa. Wildlife management strives to make use of these vast resources to enable refined genetic assessments that enhance biodiversity conservation. However, as new genomic platforms emerge, problems remain in adapting the usually complex approaches for genotyping of noninvasively collected wildlife samples. Here, we provide practical guidelines for the standardized development of reduced single nucleotide polymorphism (SNP) panels applicable for microfluidic genotyping of degraded DNA samples, such as faeces or hairs. We demonstrate how microfluidic SNP panels can be optimized to efficiently monitor European wildcat (Felis silvestris S.) populations. We show how panels can be set up in a modular fashion to accommodate informative markers for relevant population genetics questions, such as individual identification, hybridization assessment and the detection of population structure. We discuss various aspects regarding the implementation of reduced SNP panels and provide a framework that will allow both molecular ecologists and practitioners to help bridge the gap between genomics and applied wildlife conservation. 相似文献
5.
Hybridization between wild species and their domestic congeners is considered a major threat for wildlife conservation. Genetic integrity of the European wildcat, for instance, is a concern as they are outnumbered by domestic cats by several orders of magnitude throughout its range. We genotyped 1,071 individual wildcat samples obtained from hair traps and roadkills collected across the highly fragmented forests of western Central Europe, in Germany and Luxembourg, to assess domestic cat introgression in wildcats in human‐dominated landscapes. Analyses using a panel of 75 autosomal SNPs suggested a low hybridization rate, with 3.5% of wildcat individuals being categorized as F1, F2, or backcrosses to either parental taxon. We report that results based on a set of SNPs were more consistent than on a set of 14 microsatellite markers, showed higher accuracy to detect hybrids and their class in simulation analyses, and were less affected by underlying population structure. Our results strongly suggest that very high hybridization rates previously reported for Central Europe may be partly due to inadequate choice of markers and/or sampling design. Our study documents that an adequately selected SNP panel for hybrid detection may be used as an alternative to commonly applied microsatellite markers, including studies relying on noninvasively collected samples. In addition, our finding of overall low hybridization rates in Central European wildcats provides an example of successful wildlife coexistence in human‐dominated, fragmented landscapes. 相似文献
6.
The Burmese is a breed of domestic cat that originated in Southeast Asia and was further developed in the United States. Variants in melanocortin 1 receptor (MC1R) causes common coat colour phenotypes in a variety of mammalian species but only limited colour variation in the domestic cat. Known as the extension (E) locus, melanocortin 1 receptor (MC1R) interacts with the agouti locus to produce the eumelanin and pheomelanin pigments. Recently, a novel reddish coloration, which is termed russet, was identified in the Burmese cat breed. Because this russet Burmese coloration changes with aging, MC1R was suggested as candidate gene. The similar colouration in specific lineages of Norwegian Forest cat known as amber (e) (c.250G>A; p.Asp84Asn) was excluded for this Burmese phenotype. The complete 954‐bp coding region of MC1R was directly sequenced in russet Burmese and suspected carriers. A 3‐bp deletion (c.439_441del) associated with the deletion of a phenyalanine (p.Phe146del) in the protein sequence was identified. All russet coloured cats were homozygous for the variant, and all obligate carriers were heterozygous, confirming that the deletion segregated concordantly with colouring in Burmese cats from the New Zealand foundation lineage. The variant was not identified in 442 cats from 26 different breeds and random‐bred cats. Twenty‐six Burmese from the USA did not have the variant. This MC1R variant defines a unique coloration and the second breed‐specific MC1R variant in cats. The interactions of the two recessive feline MC1R alleles (E > e, er) is unknown. 相似文献
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Federica Mattucci Rita Oliveira Leslie A. Lyons Paulo C. Alves Ettore Randi 《Ecology and evolution》2016,6(1):3-22
Extant populations of the European wildcat are fragmented across the continent, the likely consequence of recent extirpations due to habitat loss and over‐hunting. However, their underlying phylogeographic history has never been reconstructed. For testing the hypothesis that the European wildcat survived the Ice Age fragmented in Mediterranean refuges, we assayed the genetic variation at 31 microsatellites in 668 presumptive European wildcats sampled in 15 European countries. Moreover, to evaluate the extent of subspecies/population divergence and identify eventual wild × domestic cat hybrids, we genotyped 26 African wildcats from Sardinia and North Africa and 294 random‐bred domestic cats. Results of multivariate analyses and Bayesian clustering confirmed that the European wild and the domestic cats (plus the African wildcats) belong to two well‐differentiated clusters (average ФST = 0.159, Rst = 0.392, P > 0.001; Analysis of molecular variance [AMOVA]). We identified from c. 5% to 10% cryptic hybrids in southern and central European populations. In contrast, wild‐living cats in Hungary and Scotland showed deep signatures of genetic admixture and introgression with domestic cats. The European wildcats are subdivided into five main genetic clusters (average ФST = 0.103, Rst = 0.143, P > 0.001; AMOVA) corresponding to five biogeographic groups, respectively, distributed in the Iberian Peninsula, central Europe, central Germany, Italian Peninsula and the island of Sicily, and in north‐eastern Italy and northern Balkan regions (Dinaric Alps). Approximate Bayesian Computation simulations supported late Pleistocene–early Holocene population splittings (from c. 60 k to 10 k years ago), contemporary to the last Ice Age climatic changes. These results provide evidences for wildcat Mediterranean refuges in southwestern Europe, but the evolution history of eastern wildcat populations remains to be clarified. Historical genetic subdivisions suggest conservation strategies aimed at enhancing gene flow through the restoration of ecological corridors within each biogeographic units. Concomitantly, the risk of hybridization with free‐ranging domestic cats along corridor edges should be carefully monitored. 相似文献
9.
L. C. Gershony M. C. T. Penedo B. W. Davis W. J. Murphy C. R. Helps L. A. Lyons 《Animal genetics》2014,45(6):893-897
Coat colours and patterns are highly variable in cats and are determined mainly by several genes with Mendelian inheritance. A 2‐bp deletion in agouti signalling protein (ASIP) is associated with melanism in domestic cats. Bengal cats are hybrids between domestic cats and Asian leopard cats (Prionailurus bengalensis), and the charcoal coat colouration/pattern in Bengals presents as a possible incomplete melanism. The complete coding region of ASIP was directly sequenced in Asian leopard, domestic and Bengal cats. Twenty‐seven variants were identified between domestic and leopard cats and were investigated in Bengals and Savannahs, a hybrid with servals (Leptailurus serval). The leopard cat ASIP haplotype was distinguished from domestic cat by four synonymous and four non‐synonymous exonic SNPs, as well as 19 intronic variants, including a 42‐bp deletion in intron 4. Fifty‐six of 64 reported charcoal cats were compound heterozygotes at ASIP, with leopard cat agouti (APbe) and domestic cat non‐agouti (a) haplotypes. Twenty‐four Bengals had an additional unique haplotype (A2) for exon 2 that was not identified in leopard cats, servals or jungle cats (Felis chaus). The compound heterozygote state suggests the leopard cat allele, in combination with the recessive non‐agouti allele, influences Bengal markings, producing a darker, yet not completely melanistic coat. This is the first validation of a leopard cat allele segregating in the Bengal breed and likely affecting their overall pelage phenotype. Genetic testing services need to be aware of the possible segregation of wild felid alleles in all assays performed on hybrid cats. 相似文献
10.
M. Longeri A. Chiodi M. Brilli A. Piazza L. A. Lyons G. Sofronidis M. C. Cozzi C. Bazzocchi 《Animal genetics》2019,50(6):718-725
Targeted GBS is a recent approach for obtaining an effective characterization for hundreds to thousands of markers. The high throughput of next‐generation sequencing technologies, moreover, allows sample multiplexing. The aims of this study were to (i) define a panel of single nucleotide polymorphisms (SNPs) in the cat, (ii) use GBS for profiling 16 cats, and (iii) evaluate the performance with respect to the inference using standard approaches at different coverage thresholds, thereby providing useful information for designing similar experiments. Probes for sequencing 230 variants were designed based on the Felis_catus_8.0. 8.0 genome. The regions comprised anonymous and non‐anonymous SNPs. Sixteen cat samples were analysed, some of which had already been genotyped in a large group of loci and one having been whole‐genome sequenced in the 99_Lives Cat Genome Sequencing Project. The accuracy of the method was assessed by comparing the GBS results with the genotypes already available. Overall, GBS achieved good performance, with 92–96% correct assignments, depending on the coverage threshold used to define the set of trustable genotypes. Analyses confirmed that (i) the reliability of the inference of each genotype depends on the coverage at that locus and (ii) the fraction of target loci whose genotype can be inferred correctly is a function of the total coverage. GBS proves to be a valid alternative to other methods. Data suggested a depth of less than 11× is required for greater than 95% accuracy. However, sequencing depth must be adapted to the total size of the targets to ensure proper genotype inference. 相似文献
11.
Communal nesting lizards may be vulnerable to climate warming, particularly if air temperatures regulate nest temperatures. In southeastern Australia, velvet geckos Oedura lesueurii lay eggs communally inside rock crevices. We investigated whether increases in air temperatures could elevate nest temperatures, and if so, how this could influence hatching phenotypes, survival, and population dynamics. In natural nests, maximum daily air temperature influenced mean and maximum daily nest temperatures, implying that nest temperatures will increase under climate warming. To determine whether hotter nests influence hatchling phenotypes, we incubated eggs under two fluctuating temperature regimes to mimic current ‘cold’ nests (mean = 23.2 °C, range 10–33 °C) and future ‘hot’ nests (27.0 °C, 14–37 °C). ‘Hot’ incubation temperatures produced smaller hatchlings than did cold temperature incubation. We released individually marked hatchlings into the wild in 2014 and 2015, and monitored their survival over 10 months. In 2014 and 2015, hot‐incubated hatchlings had higher annual mortality (99%, 97%) than cold‐incubated (11%, 58%) or wild‐born hatchlings (78%, 22%). To determine future trajectories of velvet gecko populations under climate warming, we ran population viability analyses in Vortex and varied annual rates of hatchling mortality within the range 78– 96%. Hatchling mortality strongly influenced the probability of extinction and the mean time to extinction. When hatchling mortality was >86%, populations had a higher probability of extinction (PE: range 0.52– 1.0) with mean times to extinction of 18–44 years. Whether future changes in hatchling survival translate into reduced population viability will depend on the ability of females to modify their nest‐site choices. Over the period 1992–2015, females used the same communal nests annually, suggesting that there may be little plasticity in maternal nest‐site selection. The impacts of climate change may therefore be especially severe on communal nesting species, particularly if such species occupy thermally challenging environments. 相似文献
12.
Zuzana Karlíková Petr Veselý Jana Beránková Roman Fuchs 《Ethology : formerly Zeitschrift fur Tierpsychologie》2016,122(2):180-191
Numerous studies have shown warning coloration to facilitate the discrimination of edible and inedible prey. However, inedible insect species may possess cryptic coloration as well. It has been shown that some other visual features (especially characteristic body shape) are sufficient for the recognition of some insect taxa (e.g. ladybirds, ants, wasps). We tested the ability of wild‐caught great tits (Parus major) to discriminate between the identically coloured edible (roach – Blaptica dubia) and the inedible (firebug – Pyrrhocoris apterus) as prey according to subtle peripheral visual traits (shape of legs and antennae, body posture, and means of locomotion). Both prey species were offered either simultaneously or alternately. The ability of the birds to learn was tested by means of fourteen trial repetitions in two sessions. In general, great tits were not able to learn to discriminate between firebugs and roaches by subtle shape cues alone during the two sessions. However, multivariate analysis of individual bird behaviour showed that they adopted one of three different attitudes to the presented prey. Most of the birds never attacked any or always attacked both prey. In addition, a small proportion of the birds was able to discriminate between the two prey types and attacked only roaches. Nevertheless, firebugs survived most of the attacks, which suggests that in case of chemically protected prey, the evolution of conspicuous coloration is not always the best/only option. 相似文献
13.
Marisa K. Lipsey David E. Naugle Joshua Nowak Paul M. Lukacs 《Diversity & distributions》2017,23(7):783-793
14.
Greg Mutze 《Journal of Biogeography》2017,44(7):1679-1681
Recent analyses of geographical variation in cats’ diet across Australia have been used to highlight rabbit control as a conservation risk, on the basis that prey‐switching by cats following rabbit control is likely to threaten Australian fauna. There is no direct evidence to support that proposition. However, there is direct evidence of repeated prey‐switching due to seasonal fluctuations in uncontrolled rabbit populations, of long‐term suppression of rabbit numbers by effective rabbit control, and that reduced rabbit abundance leads to reduced cat abundance, reduced predation of native fauna and recovery of threatened prey populations. Furthermore, rabbits are a known threat to many Australian native plants and rabbit control has proven benefits for their recovery, thereby offering long‐term benefits for dependent fauna and broader ecosystem function. On the balance of evidence, rabbit control should be encouraged in Australia wherever possible, as a national conservation priority. 相似文献
15.
Leigh‐Ann Woolley Hayley M. Geyle Brett P. Murphy Sarah M. Legge Russell Palmer Christopher R. Dickman John Augusteyn Sarah Comer Tim S. Doherty Charlie Eager Glenn Edwards Dan K.P. Harley Ian Leiper Peter J. McDonald Hugh W. McGregor Katherine E. Moseby Cecilia Myers John L. Read Joanna Riley Danielle Stokeld Jeff M. Turpin John C.Z. Woinarski 《Mammal Review》2019,49(4):354-368
- Mammals comprise the bulk of the diet of free‐ranging domestic cats Felis catus (defined as including outdoor pet cats, strays, and feral cats) in most parts of their global range. In Australia, predation by introduced feral cats has been implicated in the extinction of many mammal species, and in the ongoing decline of many extant species.
- Here, we collate a wide range of records of predation by cats (including feral and pet cats) on Australian mammals and model traits of extant, terrestrial, native mammal species associated with the relative likelihood of cat predation. We explicitly seek to overcome biases in such a continental‐scale compilation by excluding possible carrion records for larger species and accounting for differences in the distribution and abundance of potential prey species, as well as study effort, throughout each species’ range.
- For non‐volant species, the relative likelihood of predation by cats was greatest for species in an intermediate weight range (peaking at ca. 400 g), in lower rainfall areas and not dwelling in rocky habitats. Previous studies have shown the greatest rates of decline and extinction in Australian mammals to be associated with these traits. As such, we provide the first continental‐scale link between mammal decline and cat predation through quantitative analysis.
- Our compilation of cat predation records for most extant, terrestrial, native mammal species (151 species, or 52% of the Australian species’ complement) is substantially greater than previously reported (88 species) and includes 50 species listed as threatened by the IUCN or under Australian legislation (57% of Australia's 87 threatened terrestrial mammal species). We identify the Australian mammal species most likely to be threatened by predation by cats (mulgaras Dasycercus spp., kowari Dasyuroides byrnei, many smaller dasyurids and medium‐sized to large rodents, among others) and hence most likely to benefit from enhanced mitigation of cat impacts, such as translocations to predator‐free islands, the establishment of predator‐proof fenced exclosures, and broad‐scale cat poison baiting.
16.
David W. Macdonald Helen M. Bothwell aneta Kaszta Eric Ash Gilmoore Bolongon Dawn Burnham
zgün Emre Can Ahimsa Campos‐Arceiz Phan Channa Gopalasamy Reuben Clements Andrew J. Hearn Laurie Hedges Saw Htun Jan F. Kamler Kae Kawanishi Ewan A. Macdonald Shariff Wan Mohamad Jonathan Moore Hla Naing Manabu Onuma Ugyen Penjor Akchousanh Rasphone Darmaraj Mark Rayan Joanna Ross Priya Singh Cedric Kai Wei Tan Jamie Wadey Bhupendra P. Yadav Samuel A. Cushman 《Diversity & distributions》2019,25(10):1639-1654
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The outcome of species interactions may manifest differently at different spatial scales; therefore, our interpretation of observed interactions will depend on the scale at which observations are made. For example, in ladybeetle–aphid systems, the results from small‐scale cage experiments usually cannot be extrapolated to landscape‐scale field observations. To understand how ladybeetle–aphid interactions change across spatial scales, we evaluated predator–prey interactions in an experimental system. The experimental habitat consisted of 81 potted plants and was manipulated to facilitate analysis across four spatial scales. We also simulated a spatially explicit metacommunity model parallel to the experiment. In the experiment, we found that the negative effect of ladybeetles on aphids decreased with increasing spatial scales. This pattern can be explained by ladybeetles strongly suppressing aphids at small scales, but not colonizing distant patches fast enough to suppress aphids at larger scales. In the experiment, the positive effects of aphids on ladybeetles were strongest at three‐plant scale. In a model scenario where predators did not have demographic dynamics, we found, consistent with the experiment, that both the effects of ladybeetles on aphids and the effects of aphids on ladybeetles decreased with increasing spatial scales. These patterns suggest that dispersal was the primary cause of ladybeetle population dynamics in our experiment: aphids increased ladybeetle numbers at smaller scales because ladybeetles stayed in a patch longer and performed area‐restricted searches after encountering aphids; these behaviors did not affect ladybeetle numbers at larger spatial scales. The parallel experimental and model results illustrate how predator–prey interactions can change across spatial scales, suggesting that our interpretation of observed predator–prey dynamics would differ if observations were made at different scales. This study demonstrates how studying ecological interactions at a range of scales can help link the results of small‐scale ecological experiments to landscape‐scale ecological problems. 相似文献
19.
Invasive ants threaten biodiversity, ecosystem services and agricultural systems. This study evaluated a prey‐baiting approach for managing Argentine ants in natural habitat invaded by Argentine ants. Blackmound termites (Amitermes hastatus) were topically exposed to fipronil and presented to Argentine ants (Linepithema humile). In laboratory assays, L. humile colonies were offered fipronil‐treated termites within experimental arenas. The termites were readily consumed, and results demonstrate that a single termite topically treated with 590 ng fipronil is capable of killing at least 500 L. humile workers in 4 days. Field studies were conducted in natural areas invaded by L. humile. Fipronil‐treated termites scattered within experimental plots provided rapid control of L. humile and ant densities throughout the treated plots declined by 98 ± 5% within 21 days. Results demonstrate that the prey‐baiting approach is highly effective against L. humile and may offer an effective alternative to traditional bait treatments. Furthermore, prey‐baiting offers environmental benefits by delivering substantially less toxicant to the environment relative to current control methods which rely on commercial bait formulations and may offer greater target specificity. 相似文献
20.
- The Iberian Peninsula supports a high diversity of bumblebees, with 38 species all of which are at or near the south‐western edge of their range. We might expect them to be threatened by climate change, but their distributions within Iberia are poorly documented.
- In this study, we examine the climatic conditions that explain the distribution of Iberian bumblebees. Species distribution models (SDMs) were built using a presence‐only technique (Maxent), incorporating presence data of Iberian bumblebees (initially 5795 records for 38 species) with seven climatic variables.
- We observed that: (i) mountain regions were highlighted as rich in species (bumblebee hot spots); (ii) rare species are climatic specialist species that mainly inhabit mountain regions; (iii) common species are more tolerant of a broader range of climates, notably of higher temperatures; (iv) some areas of Iberia are largely undersampled, including areas predicted to support high bumblebee diversity.
- We identify areas where targeted searches may reveal undiscovered populations of rare bumblebee species. Obtaining a good knowledge of the current distribution of species is a vital first step towards devising approaches for their conservation.