Current challenges in quantitative modeling of epidermal growth factor signaling

Over the last decade, epidermal growth factor (EGF) signaling has been used repeatedly as a test-bed for pioneering computational systems biology. Recent breakthroughs in our molecular understanding of EGF signaling pose new challenges for mathematical modeling strategies. Three key areas emerge as particularly relevant: the pervasive importance of compartmentalization and endosomal trafficking; the complexity of signalosome complexes; and the regulatory influence of diffusion and spatiality. Each one of them demands a drastic change in current computational approaches. We discuss recent developments in the field that address these emerging aspects in a new generation of more realistic - and potential more useful - models of EGF signaling.     

Genotypic variability and persistence of Legionella pneumophila PFGE patterns in 34 cooling towers from two different areas

Genotypic variability and clonal persistence are important concepts in molecular epidemiology as they facilitate the search for the source of sporadic cases or outbreaks of legionellosis. We studied the genotypic variability and persistence of Legionella pulsed-field gel electrophoresis (PFGE) patterns over time (period > 6 months) in 34 positive cooling towers from two different areas. In area A, radius of 70 km, 52 indistinguishable PFGE patterns were differentiated among the 27 cooling towers. In 13 cooling towers we observed ≥ 2 PFGE patterns. Each cooling tower had its own indistinguishable Legionella PFGE pattern which was not shared with any other cooling tower. In area B, radius of 1 km, 10 indistinguishable PFGE patterns were obtained from the seven cooling towers. In four, we observed ≥ 2 PFGE patterns. Three of these 10 indistinguishable PFGE patterns were shared by more than one cooling tower. In 27 of 34 cooling towers the same PFGE pattern was recovered after 6 months to up to 5 years of follow-up. The large genotypic diversity of Legionella observed in the cooling towers aids in the investigation of community outbreaks of Legionnaires' disease. However, shared patterns in small areas may confound the epidemiological investigation. The persistence of some PFGE patterns in cooling towers makes the recovery of the Legionella isolate causing the outbreak possible over time.     

Towards an anthropometric history of latin America in the second half of the twentieth century

We examine the evolution of adult female heights in twelve Latin American countries during the second half of the twentieth century based on demographic health surveys and related surveys compiled from national and international organizations. Only countries with more than one survey were included, allowing us to cross-examine surveys and correct for biases. We first show that average height varies significantly according to location, from 148.3 cm in Guatemala to 158.8 cm in Haiti. The evolution of heights over these decades behaves like indicators of human development, showing a steady increase of 2.6 cm from the 1950s to the 1990s. Such gains compare favorably to other developing regions of the world, but not so much with recently developed countries. Height gains were not evenly distributed in the region, however. Countries that achieved higher levels of income, such as Brazil, Chile, Colombia and Mexico, gained on average 0.9 cm per decade, while countries with shrinking economies, such as Haiti and Guatemala, only gained 0.25 cm per decade.     

Growth status of disadvantaged urban Guatemalan children of a resettled community

This paper reports the physical growth and body composition from the first year of longitudinal study of 519 Guatemalan children, and their families, from a disadvantaged urban community consisting largely of refugees of the 1976 earthquake. Four cohorts are described, composed of children of 1,3,5, and 7 years at examination. The children are smaller, weigh less, and have reduced fat stores compared either to NCHS reference data or to upper SES Guatemalan children. Stature (or length) and head circumference deviate more from reference data than do triceps or upper arm muscle circumference. Greater deviations are found in the linear dimensions of males than of females. These children are the smallest yet described from Guatemala City, though they are slightly larger than available rural samples. This suggests a continuum of environmental effects acting upon the growth of children of differing socioeconomic levels.     

Chromosome segregation: centromeres get bent

Work over the last several decades has shown that kinetochores play an active part in chromosome segregation, while the chromatin and, more to the point, the DNA have gathered little attention. In two intriguing papers, the Bloom and Khodjakov groups show that intercentromeric chromatin plays a much more active part in chromosome segregation than previously suspected.     

Interaction of nutritional and socioeconomic status as determinants of cognitive development in disadvantaged urban Guatemalan children

The relationship between nutritional status, measured by height for age, and cognition, measured by WISC full-scale IQ, was studied in a longitudinal sample of 459 urban Guatemalan children, aged 4-9 years, from a disadvantage community of the fringe of Guatemala City, examined annually over a 3 year period. Socioeconomic status (SES) was controlled by developing a composite index for each home. The mean IQ differed significantly from the lowest to the highest quartiles of stature, the difference between the two extreme quartiles being approximately 0.3 SD of IQ. There was a significant interaction between SES and stature in their effects on IQ. Whereas nutritional status and SES affected IQ in an additive fashion in the upper three SES quartiles, there was no difference in IQ attributible to stature among children from the most disadvantaged homes. This analysis indicates that the mild-to-moderate protein-energy malnutrition (defined by height for age) that is prevalent among children from disadvantaged environments in developing countries is significantly related to cognitive development. However, in the poorest homes, SES is seen as a more important determinant of cognitive development than stature.     

Hereditary and environmental determinants of growth in height in a longitudinal sample of children and youth of Guatemalan and European ancestry

The effects of hereditary and environmental factors upon the growth in stature of children living in Guatemala City has been studied. Heights at yearly examinations were fitted, by individual, to a double logistic curve in samples of Guatemalan and European children attending a private school in Guatemala City. These two samples differed genetically yet shared the same environment. Their growth was compared, by a multivariate analysis of the parameterized curves, to that of children from the Berkeley Growth Study, genetically similar to the European sample, yet living in different environments. The European children in Guatemala grew, before adolescence, more similar to Guatemalan and differed significantly from the Berkeley sample children. However, the amount of growth during the adolescent years experienced by the European children was similar to that of the Berkeley sample and differed from their Guatemalan counterparts.     

Manganese complexes displaying superoxide dismutase activity: a balance between different factors

Superoxide radicals are one of the most toxic reactive oxygen species and its damaging effects lead to a variety of detrimental health conditions including cardiovascular diseases, neurodegenerative disorders and other types of age-related diseases. Following Nature example, chemists have designed manganese complexes that mimic the protecting action of the superoxide dismutases (SOD), metalloenzymes that catalyze the conversion of superoxide radical to the less toxic oxygen and hydrogen peroxide. This review provides an overview of the different SOD mimic manganese complexes developed mainly over the last decade, with particular attention to those factors that could be playing a crucial role in determining their activity.     

Gene frequencies and admixture estimates in a Mexico City population

Five hundred and ten students of the Universidad Nacional Autónoma de México were tested to determine the distribution of ABO, MN, Rr-Hr blood groups, and serum haptoglobin, albumin, and Factor Bf types. Based on the results we found that the proportion of Indian and White genes are of 56.16 and 43.84%, respectively in the dihybrid model and 2.93, 56.22, and 40.85% for Blacks, Indians, and Whites in the trihybrid one. The present study reveals a higher proportion of Indian genes in the Mexico City population than estimated in previous publications. Reasons why the present results apply to a much larger group of Mexico City mestizos than the previous ones are given.     

Post-genomic insight into thylakoid membrane lateral heterogeneity and redox balance

Photosynthetic machinery requires balanced distribution of excitation energy from the light-harvesting complexes to photosystems. The efficiency of light-harvesting is regulated by thermal dissipation of excess energy, while the distribution of energy between photosystems is dependent on STN7 kinase and phosphorylation of thylakoid proteins. The regulation of excitation energy transfer has been linked to the lateral segregation of photosynthetic complexes along the thylakoid membrane. The study of photosynthetic regulation mechanisms using Arabidopsis mutants, which have been available for the last ten years, has challenged traditional views on regulation of excitation energy distribution. Here, we discuss an urgent need to create a holistic view of the dynamics of the thylakoid membrane using systematic research of the mutants available today.     

我国陆地地面水环境近十年来的变化特征及原因分析

本文根据近十年来我国环境状况公报和有关统计资料,分析了我国陆地地面水环境近十年来的变化特征及其原因。分析表明我国陆地地面水环境近十年来呈现由恶化到基本控制的变化态势;重要的污染源正由工业污染向生活污水和农业面源污染转变,从而提出了相应的污染控制策略。     

Identification of the best ovitrap installation sites for gravid Aedes (Stegomyia) aegypti in residences in Mirassol, state of São Paulo, Brazil

This study aimed at identifying the best ovitrap installation sites for gravid Aedes aegypti in Mirassol, state of S?o Paulo, Brazil. Ovitraps were installed in ten houses per block over ten blocks. Four ovitraps were placed per residence, one in the bedroom, one in the living room, and two outdoors with one in a sheltered area and one in an outside site. Each week for eleven weeks, visits were made to examine the ovitraps and to change the paddles used for egg-laying. Eggs were analyzed according to the trap location. The results showed that the outdoor sites received significantly more oviposition than indoor sites. Additionally, in respect to the outdoor sites, the outside site received significantly more oviposition than the sheltered site. A strong correlation was observed between positive traps and egg numbers. The results are discussed with respect to the best installation site of the traps and their implications in surveillance and control of dengue vectors.     

Final Opportunity to Rehabilitate an Urban River as a Water Source for Mexico City

The aim of this study was to evaluate the amount and quality of water in the Magdalena-Eslava river system and to propose alternatives for sustainable water use. The system is the last urban river in the vicinity of Mexico City that supplies surface water to the urban area. Historical flow data were analyzed (1973–2010), along with the physicochemical and bacteriological attributes, documenting the evolution of these variables over the course of five years (2008–2012) in both dry and rainy seasons. The analyses show that the flow regime has been significantly altered. The physicochemical variables show significant differences between the natural area, where the river originates, and the urban area, where the river receives untreated wastewater. Nutrient and conductivity concentrations in the river were equivalent to domestic wastewater. Fecal pollution indicators and various pathogens were present in elevated densities, demonstrating a threat to the population living near the river. Estimates of the value of the water lost as a result of mixing clean and contaminated water are presented. This urban river should be rehabilitated as a sustainability practice, and if possible, these efforts should be replicated in other areas. Because of the public health issues and in view of the population exposure where the river flows through the city, the river should be improved aesthetically and should be treated to allow its ecosystem services to recover. This river represents an iconic case for Mexico City because it connects the natural and urban areas in a socio-ecological system that can potentially provide clean water for human consumption. Contaminated water could be treated and reused for irrigation in one of the green areas of the city. Wastewater treatment plants and the operation of the existing purification plants are urgent priorities that could lead to better, more sustainable water use practices in Mexico City.     

Exploring the nonlinear dynamics of the brain.

The growing need for a better understanding of large-scale brain dynamics has stimulated in the last decade the development of new and more advanced data analysis techniques. Progress in this domain has greatly benefited from developments in nonlinear time series analysis. This review gives a short overview of some of the nonlinear properties one may wish to infer from brain recordings and presents some examples and recent applications.     

A preliminary check list of macromycetes in northern Tunisia

Within the last decade, checklists of fungi of several countries have been published or updated. Nevertheless, no checklists of macromycetes have hitherto been published for Tunisia (North Africa) apart from a mycocoenological study reporting 34 listed species. This work presents a list of macromycetes collected from January 2014 to March 2015 in six governorates of northern Tunisia. One hundred and twenty-three species (117 basidiomycetes and six ascomycetes) belonging to 78 genera and 46 families were recorded.     

The agrochemical arsenal versus the enemies of plants. General considerations

Plants are attacked, not only by various microorganisms, but also by other enemies, such as molluscs, nematods, mites, and insects. They have evolved complex and efficient mechanisms to defend themselves against pathogens (hypersensitive response, systemic acquired resistance) and herbivores (release of volatile compounds that attract predators of the herbivores, accumulation of proteinase inhibitors). Yet, the confrontation of the plants with their invaders can also turn to the advantage of the latter. In the past, the attacks of crops regularly brought about dramatic economic losses. From the World War II onwards, the development of organic chemistry associated with a growing awareness of the problems of agriculture has resulted in the production of a constantly growing number of plant protection products. They are currently divided into about ten classes, the herbicides, fungicides, and insecticides-acaricides making up more than 90% of the world market. Most of the agrochemical products put on the market over these last three decades are used in relatively low doses and have a more favourable toxicological and ecotoxicological profile than those of the former pesticides, many of which are now withdrawn from the market. Several more or less recent families are derivatives of metabolites from various organisms. Thus, the improvement achieved in the protection of crops is outstanding. However, one on the main side-effect is an environmental imbalance that has entailed a dependency on agrochemicals. Quite judiciously, alternative strategies (elicitors, genetic engineering, etc.) have been initiated or developed over the last decade.     

Del Istmo大学总体规划——第一期工程

Del Istmo大学的新校园坐落于危地马拉市边迅速发展的圣伊莎贝尔社区。这个49公顷的基地掩映在美丽的山坡与山谷中。大学希望扩招至6200名学生，计划在20年内分期实现。大学教学宗旨与目标包括对个人以及周边社区的高度关注。新校园的空间形式是大学对社会目标的回应，与推进现代学习关系的体现。考虑到影响基地的生态力与系统，新建筑充分考虑位置与朝向，促进自然通风与光线引入。校园是可持续策略的典范。     

Regularities of the location of genes having different functions and of some other nucleotide sequences in the bacterial chromosome

The review considers the results of genomic research performed over the last decade that shed light on the location in the bacterial chromosomes of genes having different functions. A tendency towards polarity of the chromosome composition is observed: vitally important genes tend to be concentrated in the region of replication origin (oriC), and their concentration decreases toward the region of replication termination (terC). An oppositely directed polarity (an increase near the terC region) is observed for the distribution of certain oligonucleotides involved in the process of chromosome recombination and segregation.     

Regularities of the location of genes having different functions and of some other nucleotide sequences in the bacterial chromosome

The review considers the results of genomic research performed over the last decade that shed light on the location in the bacterial chromosomes of genes having different functions. A tendency towards polarity of the chromosome composition is observed: vitally important genes tend to be concentrated in the region of replication origin (oriC), and their concentration decreases toward the region of replication termination (terC). An oppositely directed polarity (an increase near the terC region) is observed for the distribution of certain oligonucleotides involved in the process of chromosome recombination and segregation.