Differences in fungal and bacterial physiology alter soil carbon and nitrogen cycling: insights from meta‐analysis and theoretical models

Since fungi and bacteria are the dominant decomposers in soil, their distinct physiologies are likely to differentially influence rates of ecosystem carbon (C) and nitrogen (N) cycling. We used meta‐analysis and an enzyme‐driven biogeochemical model to explore the drivers and biogeochemical consequences of changes in the fungal‐to‐bacterial ratio (F : B). In our meta‐analysis data set, F : B increased with soil C : N ratio (R² = 0.224, P < 0.001), a relationship predicted by our model. We found that differences in biomass turnover rates influenced F : B under conditions of C limitation, while differences in biomass stoichiometry set the upper bounds on F : B once a nutrient limitation threshold was reached. Ecological interactions between the two groups shifted along a gradient of resource stoichiometry. At intermediate substrate C : N, fungal N mineralisation fuelled bacterial growth, increasing total microbial biomass and decreasing net N mineralisation. Therefore, we conclude that differences in bacterial and fungal physiology may have large consequences for ecosystem‐scale C and N cycling.     

Vertical distribution of the soil microbiota along a successional gradient in a glacier forefield

Spatial patterns of microbial communities have been extensively surveyed in well‐developed soils, but few studies investigated the vertical distribution of micro‐organisms in newly developed soils after glacier retreat. We used 454‐pyrosequencing to assess whether bacterial and fungal community structures differed between stages of soil development (SSD) characterized by an increasing vegetation cover from barren (vegetation cover: 0%/age: 10 years), sparsely vegetated (13%/60 years), transient (60%/80 years) to vegetated (95%/110 years) and depths (surface, 5 and 20 cm) along the Damma glacier forefield (Switzerland). The SSD significantly influenced the bacterial and fungal communities. Based on indicator species analyses, metabolically versatile bacteria (e.g. Geobacter) and psychrophilic yeasts (e.g. Mrakia) characterized the barren soils. Vegetated soils with higher C, N and root biomass consisted of bacteria able to degrade complex organic compounds (e.g. Candidatus Solibacter), lignocellulolytic Ascomycota (e.g. Geoglossum) and ectomycorrhizal Basidiomycota (e.g. Laccaria). Soil depth only influenced bacterial and fungal communities in barren and sparsely vegetated soils. These changes were partly due to more silt and higher soil moisture in the surface. In both soil ages, the surface was characterized by OTUs affiliated to Phormidium and Sphingobacteriales. In lower depths, however, bacterial and fungal communities differed between SSD. Lower depths of sparsely vegetated soils consisted of OTUs affiliated to Acidobacteria and Geoglossum, whereas depths of barren soils were characterized by OTUs related to Gemmatimonadetes. Overall, plant establishment drives the soil microbiota along the successional gradient but does not influence the vertical distribution of microbiota in recently deglaciated soils.     

Persistent high temperature and low precipitation reduce peat carbon accumulation

Extreme climate events are predicted to become more frequent and intense. Their ecological impacts, particularly on carbon cycling, can differ in relation to ecosystem sensitivity. Peatlands, being characterized by peat accumulation under waterlogged conditions, can be particularly sensitive to climate extremes if the climate event increases soil oxygenation. However, a mechanistic understanding of peatland responses to persistent climate extremes is still lacking, particularly in terms of aboveground–belowground feedback. Here, we present the results of a transplantation experiment of peat mesocosms from high to low altitude in order to simulate, during 3 years, a mean annual temperature c. 5 °C higher and a mean annual precipitation c. 60% lower. Specifically, we aim at understanding the intensity of changes for a set of biogeochemical processes and their feedback on carbon accumulation. In the transplanted mesocosms, plant productivity showed a species‐specific response depending on plant growth forms, with a significant decrease (c. 60%) in peat moss productivity. Soil respiration almost doubled and Q₁₀ halved in the transplanted mesocosms in combination with an increase in activity of soil enzymes. Spectroscopic characterization of peat chemistry in the transplanted mesocosms confirmed the deepening of soil oxygenation which, in turn, stimulated microbial decomposition. After 3 years, soil carbon stock increased only in the control mesocosms whereas a reduction in mean annual carbon accumulation of c. 30% was observed in the transplanted mesocosms. Based on the above information, a structural equation model was built to provide a mechanistic understanding of the causal connections between peat moisture, vegetation response, soil respiration and carbon accumulation. This study identifies, in the feedback between plant and microbial responses, the primary pathways explaining the reduction in carbon accumulation in response to recurring climate extremes in peat soils.     

A long‐term field experiment of soil transplantation demonstrating the role of contemporary geographic separation in shaping soil microbial community structure

The spatial patterns of microbial communities are largely determined by the combined effects of historical contingencies and contemporary environmental disturbances, but their relative importance remains poorly understood. Empirical biogeographic data currently available are mostly based on the traditional method of observational survey, which typically involves comparing indigenous microbial communities across spatial scales. Here, we report a long‐term soil transplantation experiment, whereby the same two soils (red Acrisol and purple Cambisol from Yingtan) were placed into two geographic locations of ~1000 km apart (i.e., Yingtan in the mid‐subtropical region and Fengqiu in warm‐temperate region; both located in China). Twenty years after the transplantation, the resulting soil microbial communities were subject to high‐throughput 454 pyrosequencing analysis of 16S and 18S rRNA genes. Additionally, bacteria and archaea involved in nitrogen cycling were estimated using clone library analysis of four genes: archaeal amoA, bacterial amoA, nirK, and nifH. Data of subsequent phylogenetic analysis show that bacteria, fungi, and other microbial eukaryotes, as well as the nitrogen cycling genes, are grouped primarily by the factor of geographic location rather than soil type. Moreover, a shift of microbial communities toward those in local soil (i.e., Chao soil in Fengqiu) has been observed. The results thus suggest that the historical effects persistent in the soil microbial communities can be largely erased by contemporary disturbance within a short period of 20 years, implicating weak effects of historical contingencies on the structure and composition of microbial communities in the soil.     

Fungal and Bacterial Activity in Northern Peatlands

Selective inhibition of substrate-induced respiration with antibiotics cycloheximide and streptomycin sulphate provided insight into eukaryotic versus prokaryotic activities in surface peat soil of three Canadian peatlands. Prokaryotic and eukaryotic communities in peatlands are important in the net sequestration of atmospheric carbon dioxide and therefore play a unique role in global carbon cycling. Selective inhibition techniques were generally successful, with a maximum non-target inhibition of only 17%. Assuming that eukaryotic and prokaryotic activities were dominated by fungi and bacteria respectively, across 3 ecologically and hydrologically diverse and spatially dispersed peatlands, we demonstrated bacterial dominance in a bog and a poor fen both with acidic and primarily Sphagnum derived peat soil and in a near pH neutral wetter rich fen with sedge peat (fungal to bacterial activity ratio = 0.31 to 0.68). These results differ in that in other acidic environments, such as conifer forest soils, fungal to bacterial activity ratios are mostly greater than 1 indicative of fungal dominance.     

Effects of soil physics,chemistry, and microbiology on soil carbon sequestration in infertile red soils after long-term cultivation of perennial grasses

Determining the effect of perennial energy crop (PEC) cultivation on soil organic carbon (SOC) in marginal land soil is vital for carbon neutrality and bioeconomy development. However, a comprehensive and systematic evaluation of the response of SOC content to different PECs and its underlying drivers is still lacking. We used soil data collected from infertile red topsoil (0–20 cm) after 10 years of cultivation with Miscanthus (MS), Panicum virgatum (SG), and Saccharum arundinaceum (SA) to explore the changes in SOC stock induced by PEC. The roles of physical, chemical, and microbiological factors driving the increase in the SOC stock were investigated. Results revealed that SA and MS enhanced SOC stock by 87.97% and 27.52% relative to the uncultivated control. Conversely, PEC increased the percentage of soil mega-aggregates, geometric mean diameters, soil chelate iron (Fe), and aluminum (Al) oxides, and reduced soil acidity for the infertile red soils. In addition, fungal richness and diversity for PEC soils were enhanced compared to the unplanted soil. It is possible that PEC cultivation reduced the relative abundance of copiotrophic fungi but increased the relative abundance of oligotrophic fungi. Furthermore, variance partitioning analysis revealed that chemical and microbiological factors accounted for 80.54% of the total variation for the SOC stock. The partial least squares path model showed that PEC cultivation enhanced soil carbon (C) stock via soil deacidification and increased soil bacterial function. In conclusion, this study confirms the SOC sequestration potential of PEC cultivation in marginal land and the underlying mechanism driving SOC stock. The main positive factors controlling soil C sequestration included “pH,” while the negative factors were “bacterial community,” “fungal community,” and “bacterial function.” Our research may help encourage and support decision-makers of wasted marginal land conversion to PEC cultivation.     

Adaptation of soil microbial growth to temperature: Using a tropical elevation gradient to predict future changes

Terrestrial biogeochemical feedbacks to the climate are strongly modulated by the temperature response of soil microorganisms. Tropical forests, in particular, exert a major influence on global climate because they are the most productive terrestrial ecosystem. We used an elevation gradient across tropical forest in the Andes (a gradient of 20°C mean annual temperature, MAT), to test whether soil bacterial and fungal community growth responses are adapted to long‐term temperature differences. We evaluated the temperature dependency of soil bacterial and fungal growth using the leucine‐ and acetate‐incorporation methods, respectively, and determined indices for the temperature response of growth: Q₁₀ (temperature sensitivity over a given 10oC range) and T_min (the minimum temperature for growth). For both bacterial and fungal communities, increased MAT (decreased elevation) resulted in increases in Q₁₀ and T_min of growth. Across a MAT range from 6°C to 26°C, the Q₁₀ and T_min varied for bacterial growth (Q_10–20 = 2.4 to 3.5; T_min = ?8°C to ?1.5°C) and fungal growth (Q_10–20 = 2.6 to 3.6; T_min = ?6°C to ?1°C). Thus, bacteria and fungi did not differ significantly in their growth temperature responses with changes in MAT. Our findings indicate that across natural temperature gradients, each increase in MAT by 1°C results in increases in T_min of microbial growth by approximately 0.3°C and Q_10–20 by 0.05, consistent with long‐term temperature adaptation of soil microbial communities. A 2°C warming would increase microbial activity across a MAT gradient of 6°C to 26°C by 28% to 15%, respectively, and temperature adaptation of microbial communities would further increase activity by 1.2% to 0.3%. The impact of warming on microbial activity, and the related impact on soil carbon cycling, is thus greater in regions with lower MAT. These results can be used to predict future changes in the temperature response of microbial activity over different levels of warming and over large temperature ranges, extending to tropical regions.     

Dominance of bacterial ammonium oxidizers and fungal denitrifiers in the complex nitrogen cycle pathways related to nitrous oxide emission

Organic compounds and mineral nitrogen (N) usually increase nitrous oxide (N₂O) emissions. Vinasse, a by‐product of bio‐ethanol production that is rich in carbon, nitrogen, and potassium, is recycled in sugarcane fields as a bio‐fertilizer. Vinasse can contribute significantly to N₂O emissions when applied with N in sugarcane plantations, a common practice. However, the biological processes involved in N₂O emissions under this management practice are unknown. This study investigated the roles of nitrification and denitrification in N₂O emissions from straw‐covered soils amended with different vinasses (CV: concentrated and V: nonconcentrated) before or at the same time as mineral fertilizers at different time points of the sugarcane cycle in two seasons. N₂O emissions were evaluated for 90 days, the period that occurs most of the N₂O emission from fertilizers; the microbial genes encoding enzymes involved in N₂O production (archaeal and bacterial amoA, fungal and bacterial nirK, and bacterial nirS and nosZ), total bacteria, and total fungi were quantified by real‐time PCR. The application of CV and V in conjunction with mineral N resulted in higher N₂O emissions than the application of N fertilizer alone. The strategy of vinasse application 30 days before mineral N reduced N₂O emissions by 65% for CV, but not for V. Independent of rainy or dry season, the microbial processes were nitrification by ammonia‐oxidizing bacteria (AOB) and archaea and denitrification by bacteria and fungi. The contributions of each process differed and depended on soil moisture, soil pH, and N sources. We concluded that amoA‐AOB was the most important gene related to N₂O emissions, which indicates that nitrification by AOB is the main microbial‐driven process linked to N₂O emissions in tropical soil. Interestingly, fungal nirK was also significantly correlated with N₂O emissions, suggesting that denitrification by fungi contributes to N₂O emission in soils receiving straw and vinasse application.     

Relationship between enantioselective transformation of racemic quizalofop‐ethyl and soil bacterial diversity: A destructive approach

This study investigated the resilience of bacterial diversity in soils restored after autoclaving, in terms of richness, evenness and community structure, and its feedback on the enantioselective transformation of racemic quizalofop‐ethyl (rac‐QE). Microbial biomass carbon (MBC) and bacterial richness (indexed by operational taxonomic units [OTUs]) in restored soil recovered to approximately 50% and 29%, respectively, of the native soil within 43 days. Bacterial evenness was much lower in restored soil than in native soil. The relative proportions of dominant bacterial genera differed significantly (P < .05) between restored and native soils. Importantly, two major bacterial genera that recolonized restored soil were not detected in native soil. Highly enantioselective transformation of rac‐QE was observed in restored soils, whereas QE enantiomers exhibited comparable transformation rates in native soils. The second‐round enantioselective transformation of rac‐QE was altered by the first‐round transformation of enantiopure quizalofop‐P‐ethyl (R‐P‐QE) in restored and native soils through selective effects of R‐P‐QE on the bacterial community. The transformation rate of rac‐QE was predominantly determined by bacterial abundance and richness, while the enantioselectivity was correlated more with bacterial structure.     

Soil moisture effect on bacterial and fungal community in Beilu River (Tibetan Plateau) permafrost soils with different vegetation types

Aim

This study investigated the effects of environmental variables on the bacterial and fungal communities of the Beilu River (on the Tibetan Plateau) permafrost soils with different vegetation types.

Methods and Results

Microbial communities were sampled from meadow, steppe and desert steppe permafrost soils during May, June, August and November, and they were analysed by both pyrosequencing and the use of Biolog EcoPlates. The dominant bacterial and fungal phyla in meadow and steppe soils were Proteobacteria and Ascomycota, whereas Actinobacteria and Basidiomycota predominated in desert steppe soils. The bacterial communities in meadow soils degraded amines and amino acids very rapidly, while polymers were degraded rapidly by steppe communities. The RDA patterns showed that the microbial communities differed greatly between meadow, steppe and desert steppe, and they were related to variations in the soil moisture, C/N ratio and pH. A UniFrac analysis detected clear differences between the desert steppe bacterial community and others, and seasonal shifts were observed. The fungal UniFrac patterns differed significantly between meadow and steppe soils. There were significant correlations between the bacterial diversity (H′) and soil moisture (r = 0·506) and C/N (r = 0·527). The fungal diversity (Hf′) was significantly correlated with the soil pH (r = 0·541).

Conclusion

The soil moisture, C/N ratio and pH were important determinants of the microbial community structure in Beilu River permafrost soils.

Significance and Impact of the Study

These results may provide a useful baseline for predicting the variation in microbial communities in response to climate changes.     

Anthropogenic nitrogen enrichment enhances soil carbon accumulation by impacting saprotrophs rather than ectomycorrhizal fungal activity

There is evidence that anthropogenic nitrogen (N) deposition enhances carbon (C) sequestration in boreal forest soils. However, it is unclear how free‐living saprotrophs (bacteria and fungi, SAP) and ectomycorrhizal (EM) fungi responses to N addition impact soil C dynamics. Our aim was to investigate how SAP and EM communities are impacted by N enrichment and to estimate whether these changes influence decay of litter and humus. We conducted a long‐term experiment in northern Sweden, maintained since 2004, consisting of ambient, low N additions (0, 3, 6, and 12 kg N ha^?1 year^?1) simulating current N deposition rates in the boreal region, as well as a high N addition (50 kg N ha^?1 year^?1). Our data showed that long‐term N enrichment impeded mass loss of litter, but not of humus, and only in response to the highest N addition treatment. Furthermore, our data showed that EM fungi reduced the mass of N and P in both substrates during the incubation period compared to when only SAP organisms were present. Low N additions had no effect on microbial community structure, while the high N addition decreased fungal and bacterial biomasses and altered EM fungi and SAP community composition. Actinomycetes were the only bacterial SAP to show increased biomass in response to the highest N addition. These results provide a mechanistic understanding of how anthropogenic N enrichment can influence soil C accumulation rates and suggest that current N deposition rates in the boreal region (≤12 kg N ha^?1 year^?1) are likely to have a minor impact on the soil microbial community and the decomposition of humus and litter.     

阿尔泰银莲花根际土壤微生物多样性研究

为了解野生和栽培阿尔泰银莲花根际土壤微生物多样性的差异,该研究采用Illumina MiSeq高通量测序技术对野生和栽培阿尔泰银莲花根际土壤微生物的群落组成和多样性进行探究。结果表明:(1)野生阿尔泰银莲花根际土壤的真菌多样性显著高于栽培阿尔泰银莲花(P<0.05),而细菌多样性差异不显著(P>0.05); NMDS分析结果显示,野生和栽培阿尔泰银莲花根际土壤真菌群落结构差异更显著。(2)细菌9 566个可操作分类单元(OTUs)涉及39门127纲315目500科886属,真菌2 670个OTUs涉及15门57纲138目293科597属。在门水平上,细菌群落中的变形菌门、酸杆菌门、放线菌门及真菌群落中的担子菌门、子囊菌门、被孢霉门均为野生和栽培阿尔泰银莲花根际土壤优势菌门,但其相对丰度在不同生长方式下存在差异。(3)环境因子关联分析(RDA)结果显示,土壤有机质是影响土壤细菌群落的主要因子(P<0.05),土壤pH、碱解氮和有效磷是影响真菌群落的主要因子(P<0.05)。综上认为,野生和栽培下的阿尔泰银莲花根际土壤微生物群落组成和多样性存在显著差异,这种差异可能与不同生长条件下的土壤理化性质存在密切的联系,该研究结果对阿尔泰银莲花科学种植以及土壤改良具有一定意义。     

Temporal Dynamics of Bacterial and Fungal Communities in a Genetically Modified (GM) Rice Ecosystem

We assessed the temporal dynamics of bacterial and fungal communities in a soil ecosystem supporting genetically modified (GM) rice (Oryza sativa L., ABC-TPSP; fusion of trehalose-6-phosphate synthase and phosphatase). Using terminal restriction fragment length polymorphism analysis and real-time quantitative PCR, we compared bacterial and fungal communities in the soils underlying GM rice (ABC-TPSP), and its host cultivar (Nakdong) during growing seasons and non-growing seasons. Overall, the soils supporting GM and non-GM rice did not differ significantly in diversity indices, including ribotype numbers, for either bacteria or fungi. The diversity index (H) in both the bacterial and fungal communities was correlated with water content, dissolved organic carbon (DOC), and ammonium nitrogen, and the correlation was stronger in fungi than in bacteria. Multivariate analysis showed no differences in microbial community structures between the two crop genotypes, but such differences did appear in time, with significant changes observed after harvest. Gene copy number was estimated as 10⁸~10¹¹ and 10⁵~10⁷ per gram of soil for bacteria and fungi, respectively. As observed for community structure, the rice genotypes did not differ significantly in either bacterial- or fungal-specific gene copy numbers, although we observed a seasonal change in number. We summarize the results of this study as follows. (1) GM rice did not influence soil bacterial and fungal community structures as compared to non-GM rice in our system, (2) both bacterial and fungal communities changed with the growth stage of either rice genotype, (3) fungal communities were less variable than bacterial communities, and (4) although several environmental factors, including ammonium nitrogen and DOC correlated with shifts in microbial community structure, no single factor stood out.     

Responses of bacterial and fungal communities to an elevation gradient in a subtropical montane forest of China

Bacteria and fungi are ecologically important contributors to various functioning of forest ecosystems. In this study, we examined simultaneously the bacterial and fungal distributions in response to elevation changes of a forest. By using clone library analysis from genomic DNA extracted from forest humic clay soils, the composition and diversity of bacterial and fungal communities were determined across an elevation gradient from low via medium to high, in a subtropical forest in the Mountain Lushan, China. Our results showed that soil water content and nutrient availability, specifically total carbon, differed significantly with elevation changes. Although the soil acidity did not differ significantly among the three sites, low pH (around 4) could be an important selection factor selecting for acidophilic Acidobacteria and Alphaproteobacteria, which were the most abundant bacterial clones. As the majority of the fungi recovered, both Basidiomycota and Ascomycota, and their relative abundance were most closely associated with the total carbon. Based on the Shannon–Weaver diversity index and ∫-libshuff analysis, the soil at medium elevation contained the highest diversity of bacteria compared with those at high and low elevations. However, it is difficult to predict overall fungal diversity along elevation. The extreme high soil moisture content which may lead to the formation of anaerobic microhabitats in the forest soils potentially reduces the overall bacterial and fungal diversity.     

Soils from intercropped fields have a higher capacity to suppress black root rot in cassava,caused by Scytalidium lignicola

The objective of the present study was to evaluate the natural suppressive capacity of soils from forest, and monocropping and intercropping systems, against root rot, caused by Scytalidium lignicola, in a greenhouse experiment. We used soils from a tropical dry forest (FOR) and two intercropping and two monoculture systems. The first intercrop was maize and beans (CORNCOWP), and the second intercrop was cassava, pigeon peas and beans (CASPIGPCOWP). The first monoculture was beans, and the second was passion fruit. The intercropping soils showed a higher capacity to suppress black root rot in cassava than the monoculture because such soils were able to reduce disease severity by about 50%. Bean soil in the monoculture showed less microbial biomass carbon than in the intercrop, with means of 10.05 and 38.2 mg/kg, respectively. The higher density of bacteria and fungal populations, microbial biomass, urease and arylsulphatase activities correlated with a decrease in disease severity. Soils from the intercrops produced changes in soil quality, primarily in the population and density of microorganisms, enzymatic activities, total organic carbon and nutrients, reducing disease severity in cassava plants. These effects were validated by multivariate principal component analysis and showed three distinct groups: one FOR, one intercropping and one monocropping. The majority of vectors were in the direction of FOR and intercropping soils. We have provided some of the first data related to the beneficial effects of intercropping on the suppression of black root rot in cassava, which is validated through different attributes.     

炉渣与生物炭施加对稻田土壤碳库及微生物的影响

以福州平原稻田为实验区,在2015年早、晚稻秧苗移栽前,对稻田进行施加生物炭、炉渣、生物炭+炉渣（混施）处理,并以不施加处理作为对照。为了了解施加处理的后续效应,于2017年检测早、晚稻拔节期和成熟期土壤有机碳含量及真菌、细菌数量。结果表明：3种施加处理稻田土壤有机碳（SOC）含量均比对照组有显著提高（P < 0.05）,但溶解性有机碳（DOC）、易氧化碳（EOC）、土壤微生物量碳（MBC）含量各处理之间差异不显著（P > 0.05）。与对照组相比,各施加处理组在一定程度上提高了土壤中真菌和细菌数量,但差异不显著（P > 0.05）。细菌数量与DOC含量呈极显著负相关（P < 0.01）,与EOC含量呈显著负相关（P < 0.05）,与MBC含量呈显著正相关（P < 0.05）。真菌/细菌比值与真菌数量、DOC含量呈极显著正相关（P < 0.01）。说明炉渣和生物炭施加处理2年后,仍可提高稻田土壤的碳库稳定性,并增加土壤微生物数量。     

不同树叶凋落物对人参土壤理化性质及微生物群落结构的影响

树种选择是林下山参护育成败的关键,研究树叶凋落物对人参土壤养分、微生物群落结构组成的影响,旨在为林下山参护育选择适宜林地及农田栽参土壤改良提供科学依据和理论指导。通过盆栽试验,研究添加5.0 g色木槭Acer mono.Maxim.var.mono(A)、赤松Pinus densiflora Sieb.et Zucc.(B)、胡桃楸Juglans mandshurica Maxim.(C)、紫椴Tilia amurensis Rupr.(D)、蒙古栎Quercus mongolica Fisch.ex Ledeb.(E)树叶凋落物到土壤中,种植人参(Panax ginseng C.A.meyer)后研究土壤理化性质以及微生物群落结构的变化。结果表明:添加不同树叶处理后人参土壤性质发生改变,土壤p H值显著高于对照土壤5.91(P0.05),土壤全氮、速效氮磷、微生物碳氮在所有树叶处理中显著增加(P0.05),而土壤容重、速效钾和C/N在添加树叶处理中降低。18个土壤样品基因组,经16S和ITS1测序分别得到6064和1900个OUTs。其中细菌涵盖了42门、117纲、170目、213科、225属,真菌涵盖了24门、98纲、196目、330科、435属。不同树叶处理人参土壤细菌和真菌地位发生改变,细菌Proteobacteria是树叶分解的关键微生物,添加树叶后其多样性显著高于对照(P0.05)。而细菌Bacteroidetes和真菌Basidiomycota可能是区别阔叶林和针叶林树种的关键微生物,针叶林中含量显著低于阔叶林(P0.05),而真菌Ascomycota是针叶林分解的关键微生物。进一步从不同分类水平上得到特定树叶凋落物的特异细菌和真菌。典型相关分析(CDA)表明细菌Bacteroidetes、Chloroflexi、Actinobacteria及真菌Basidiomycota、Zygomycota、Chytridiomycota及Ascomycota的位置及多样性的改变均与土壤因子SMBN、TN、AP、SOC、AK、C/N、p H有关。综上所述,添加不同树叶后不仅提高土壤微生物量碳氮、改善土壤理化性质,同时改变微生物群落结构组成,不同树叶处理土壤理化性质不同导致人参土壤微生物组成的差异,本结果对于林下参选地和农田栽参土壤微生物改良具有理论指导作用。     

轮作模式对植烟土壤酶活性及真菌群落的影响

种植模式显著影响土壤理化生物学性质,并与作物土传真菌病害的发生密切相关。试验选择云南省具有代表性的红壤,设置烤烟-休闲-玉米(T-B-M)、烤烟-油菜-玉米(T-C-M)、烤烟-油菜-水稻(T-C-R)和烤烟-苕子-水稻(T-V-R)等4种轮作模式,利用化学、酶学分析及454高通量测序技术,研究了土壤养分、酶活性及真菌群落结构,旨在为烤烟的合理轮作提供科学依据。经16a的不同轮作种植后,土壤p H变化于5.6—6.4之间,仍然适合种植水稻、玉米、油菜和烤烟等多种作物。在T-V-R处理的土壤中,烤烟产量、烟叶产值和上中等烟比例最高,有机质比原初提高45.11%,碱解氮、有效磷和微生物量碳氮显著增加,蔗糖酶、脱氢酶、脲酶、磷酸酶和过氧化氢酶活性也显著高于其它轮作模式,说明T-V-R改善了土壤生态环境,促进了微生物繁衍,数量增加,活性增强。土壤真菌的18S r DNA读数依次为13097(T-B-M)、11345(T-C-M)、12939(T-C-R)和13763(T-V-R),分别代表530、378、395和581种(类)的真菌,由子囊菌门、担子菌门、接合菌门、壶菌门和尚待鉴定的真菌等构成,其中尚待鉴定的真菌属种和子囊菌门占绝大部分。在不同轮作处理的土壤中,前15种优势真菌的丰富度变化于29.46%—62.86%之间,优势菌株的相似性极低,说明土壤真菌的种群结构因轮作模式不同而异。T-V-R处理土壤中的真菌多样性指数最高,优势度指数最低,说明T-V-R轮作的土壤适合多种真菌的繁殖生长,种群数量增加。多种真菌共同存在,互相制约,可防止病原真菌过度繁殖,降低作物发生真菌病害几率。从作物产量和产值、土壤有机质、养分和真菌种群结构看,T-V-R优于其它3种轮作模式,值得推广应用。     

High abundance and role of antifungal bacteria in compost-treated soils in a wildfire area

Compost has been widely used in order to promote vegetation growth in post-harvested and burned soils. The effects on soil microorganisms were scarcely known, so we performed the microbial analyses in a wildfire area of the Taebaek Mountains, Korea, during field surveys from May to September 2007. Using culture-dependent and -independent methods, we found that compost used in burned soils influenced a greater impact on soil fungi than bacteria. Compost-treated soils contained higher levels of antifungal strains in the genera Bacillus and Burkholderia than non-treated soils. When the antifungal activity of Burkholderia sp. strain O1a_RA002, which had been isolated from a compost-treated soil, was tested for the growth inhibition of bacteria and fungi isolated from burned soils, the membrane-filtered culture supernatant inhibited 19/37 fungal strains including soil fungi, Eupenicillium spp. and Devriesia americana; plant pathogens, Polyschema larviformis and Massaria platani; an animal pathogen, Mortierella verticillata; and an unidentified Ascomycota. However, this organism only inhibited 11/151 bacterial strains tested. These patterns were compatible with the culture-independent DGGE results, suggesting that the compost used in burned soils had a greater impact on soil fungi than bacteria through the promotion of the growth of antifungal bacteria. Our findings indicate that compost used in burned soils is effective in restoring soil conditions to a state closer to those of nearby unburned forest soils at the early stage of secondary succession.     

The symbiotic bacteria Alcaligenes faecalis of the entomopathogenic nematodes Oscheius spp. exhibit potential biocontrol of plant- and entomopathogenic fungi

Soil-dwelling entomopathogenic nematodes (EPNs) kill arthropod hosts by injecting their symbiotic bacteria into the host hemolymph and feed on the bacteria and the tissue of the dying host for several generations cycles until the arthropod cadaver is completely depleted. The EPN–bacteria–arthropod cadaver complex represents a rich energy source for the surrounding opportunistic soil fungal biota and other competitors. We hypothesized that EPNs need to protect their food source until depletion and that the EPN symbiotic bacteria produce volatile and non-volatile exudations that deter different soil fungal groups in the soil. We isolated the symbiotic bacteria species (Alcaligenes faecalis) from the EPN Oscheius spp. and ran infectivity bioassays against entomopathogenic fungi (EPF) as well as against plant pathogenic fungi (PPF). We found that both volatile and non-volatile symbiotic bacterial exudations had negative effects on both EPF and PPF. Such deterrent function on functionally different fungal strains suggests a common mode of action of A. faecalis bacterial exudates, which has the potential to influence the structure of soil microbial communities, and could be integrated into pest management programs for increasing crop protection against fungal pathogens.