基于高通量测序分析大豆和油菜根际微生物群落结构的差异

根肿病是由芸薹根肿菌侵染引起的专性寄生性土传病害,严重制约着油菜等十字花科作物的可持续生产.前期研究发现,大豆作为前茬作物可以显著降低后茬油菜根肿病的发生和危害,"豆-油轮作"模式是一种值得探索和应用的根肿病防治新途径.为了解开大豆作为前茬防治根肿病发生的机理,本研究基于扩增子测序技术探究大豆与油菜根际土壤微生物的群落结构差异.结果表明:大豆和油菜根际土壤微生物类群在门水平的优势类群相同,包括变形菌门、拟杆菌门、酸杆菌门、放线菌门、子囊菌门、接合菌门、担子菌门和壶菌门等丰度都较高.但相比于油菜根际土壤,大豆根际土壤富含具有生防作用和促进植物生长的微生物,如黄杆菌属、鞘脂单胞菌属、芽孢杆菌属、链霉菌属、假单胞菌属、木霉属和盾壳霉属等;而一些植物病原细菌(如肠杆菌、黄单胞菌)和真菌(炭疽菌和尾孢菌)含量则低于油菜根际土壤;另外,大豆根际土壤中还富含具有固氮功能的根瘤菌属、慢生根瘤菌属和丛枝菌根真菌(如球囊霉属).可见,大豆根际土壤利于有益微生物生长并可抑制病原菌繁殖.大豆和油菜根际微生物组差异为大豆-油菜轮作防治根肿病提供了理论依据,并为根肿病的防治提供了一些潜在的生物防治资源.     

玉米和大豆根际土壤性质的动态变化

 采用根垫模拟装置制备根际土壤,并改变根垫与土壤接触时间以研究植物生长不同时期根际土壤性质的动态变化。研究结果表明,植物生长不同时期根际土壤性质变化有明显差异：植物生长前期,根际土壤水溶性有机碳(DOC)含量急剧增加,20 d后逐渐下降;pH值也是先升后降,但最高值出现在40～60 d前后。在研究的100 d内,氧化还原电位(Eh)始终呈下降趋势,而微生物量则持续上升。玉米(Zea mays L.)和大豆(Glycine max Merr.)根际土壤性质变化趋势基本一致,但玉米根际土壤变化幅度显著高于大豆     

十字花科作物根肿病对根际土壤微生物群落的影响

为探究根肿病对十字花科作物根际土壤微生物多样性的影响,以罹病大白菜和健康株根际土壤为研究对象,采用高通量测序技术对2组样本的细菌16S rDNA和真菌ITS基因进行序列测定,分析了样本间的微生物群落结构和组成差异,同时测定根际土壤理化性质,探讨根肿病、土壤微生物群落、土壤环境因子三者的相关性。研究表明:1)患病植株根际土壤pH和总磷、总钾、碱解氮、速效钾含量显著低于正常植株根际土,而交换性钙含量明显增加。2)根肿病的发生降低了根际土壤中细菌种群的丰富度和多样性程度,但对根际土壤中的真菌α-多样性无明显影响。3)变形菌门、拟杆菌门、放线菌门等是所测土壤样本的主要优势细菌种群,其中患病植株根际土壤中拟杆菌门丰度显著高于健康植株根际土壤,放线菌门丰度则显著降低(P<0.05)。优势细菌纲为γ-变形菌纲、拟杆菌纲、α-变形菌纲、放线菌纲、酸杆菌纲等,2组土壤样本间多种优势细菌纲相对丰度差异显著。4)根际土壤优势真菌类群为子囊菌门、被孢霉门、担子菌门和壶菌门,其相对丰度在患病和健康株根际土壤样本中均有明显差异。主要真菌纲为散囊菌纲、被孢霉纲、锤舌菌纲等,并且土壤样本间的多种优势真菌纲相对丰...     

转转基因植物对根际土壤生态系统的影响

随着全世界转基因植物种植的普及,转基因植物对生态环境的影响也受到人们的广泛关注。本文针对转基因植物对土壤生态系统带来的潜在风险做了较全面的探讨,概述了转基因植物在土壤中的残留、外源基因的水平转移及其表达产物对土壤生物、土壤理化性质的影响,为今后更安全利用转基因植物提供借鉴。     

全球气候变化对农业生态系统的影响研究进展

全球大气中CO2浓度升高、气温升高及降水量的变化等是全球气候变化对农业生产和农业生态系统影响最为重要的几个生态因子,其影响主要表现在对农作物产量、生长发育、病虫害、农业水资源及农业生态系统结构和功能等方面.在过去的几十年,全球气候变化已对我国农业和农业生态系统,特别是我国北方旱区农业造成重大影响,其中不少影响是负面的或不利的.本文综述了全球气候变化对农业水资源、农田土壤养分变化、农作物生长发育、农作物病虫害与杂草、粮食安全及农业生态系统的结构和功能等方面的影响.针对21世纪全球气候变化对我国农业生产和农业生态系统带来的挑战,探讨了今后研究的重点和难点问题.     

农田生态系统中钾循环研究进展

论述了农田生态系统中K的收入和支出,以及K的循环再利用等方面的研究进展,并针对当前K循环存在的问题提出了调控方法.从全国来看,我国施用K的数量比作物收获时从土壤中带走的K的数量少得多,K一直处于负平衡状况.我国土壤K肥力不断下降、钾肥有效地区不断扩大,虽然钾肥用量在逐年增长,但补充的K尚不能维持K的收支平衡.为了维持与提高土壤K肥力,使作物高产稳产,在今后农业生产中应充分注意土壤K的平衡,优化农田生态模式,注重水肥调控,坚持有机肥与无机肥配施的原则,促进K养分循环,保持农田K平衡,提高土壤K肥力.     

CO2倍增及UV-B增强对大豆植株生长和根际微生物的影响

以大豆'齐黄27'为研究材料,采用人工气候室模拟大气CO2浓度倍增(350～700 μmol*mol-1)及紫外线B(UV-B,280～320 nm)辐射增强(4～15 μW*cm-2)的环境条件,研究了CO2浓度增加及UV-B辐射增强对大豆生育前期的生长及根瘤、根际微生物数量的影响.结果表明:(1)增强UV-B能显著减少大豆植株地上部生物量,而对株高的抑制作用不显著;CO2浓度倍增促使大豆株高和地上生物量显著增加,对根系生物量的促进作用不显著,但能够减轻UV-B辐射增强对地上及根系生物量的抑制作用;CO2浓度增加、UV-B辐射增强及其复合胁迫均导致大豆植株根冠比下降,且复合胁迫对根冠比的抑制作用更明显.(2)CO2浓度倍增降低了大豆叶片叶绿素、类胡萝卜素及花青素含量,提高了净光合速率;UV-B辐射增强导致叶绿素含量减少,光合速率下降,却增加了类胡萝卜素及花青素含量;CO2浓度增加、UV-B辐射增强复合处理对叶片色素含量及光合速率的影响具有复合效应.(3)CO2浓度倍增能够促进根瘤数量及根际真菌数量的增加,而UV-B增强处理则显著降低细菌和放线菌的数量;CO2浓度倍增能够缓解UV-B增强处理对放线菌的抑制作用,却导致根际细菌数量进一步减少.研究发现,CO2浓度增加及UV-B辐射增强对大豆生育前期植株生长、叶片色素含量及根际微生物数量存在抑制或促进效应,而且在某些性状上存在复合效应,它们可能主要是通过调节大豆植株的干物质分配及根系的代谢间接影响根瘤数量及根际微生物数量.     

抗草甘膦转基因大豆（RRS）对根际土壤细菌数量和多样性的影响

为深入研究种植抗草甘膦转基因大豆的黑土生态区根际土壤中细菌数量及多样性的变化,试验采用DGGE-cloning测序技术与传统培养相结合的方法,研究了抗草甘膦转基因大豆(RRS)对根际土壤细菌数量以及细菌群落多样性的影响.传统培养试验结果为RRS显著降低了土壤细菌的数量;DGGE图谱分析表明,RRS根际土壤细菌16SrDNA条带数、多样性指数及均匀度指数均要低于其他处理,聚类分析显示RRS带谱与RRS-S和Y-S差异较大,相似性分别为64%和64.4%;DGGE-cloning测序结果表明,在RRS处理中缺失条带1和条带12分别属于Uncultured bacterium和Nitrospira门Nitrospira属,其中条带1与其他切取条带最小遗传距离达0.4,与其他处理相比表现出弱势差异的条带2、4、5和条带11均属于Uncultured bacterium.研究表明,RRS不同程度上降低了根际土壤细菌的数量和细菌群落的多样性,并对根际土壤中Nitrospira属细菌有一定的抑制作用.     

西宁南山4种灌木根际和非根际土壤微生物、酶活性和养分特征

西宁南山区植被退化情况严重,人工造林植被恢复被看作是最有效的恢复手段,其中选择合适造林树种尤为关键。选择人工种植的唐古特白刺Nitraria tangutorum、柠条Caragana korshinskii、西北小蘗Berberis vernae和短叶锦鸡儿Caragana brevifolia共4种灌木树种造林试验区为研究对象,通过测定根际和非根际土壤微生物数量、酶活性及养分含量,综合比较种植4种灌木树种根际和非根际土壤肥力差异,科学评价其对土壤的改善效果。研究表明:(1)土壤微生物数量和酶活性总体呈现出根际高于非根际的规律,仅放线菌数量和脲酶活性出现了根际低于非根际现象。(2)土壤养分方面,4种灌木根际土壤和非根际土壤p H值、全N、全P、全K含量差异不显著,有机质、有效P、速效K含量均呈现出根际非根际,而碱解N则是根际非根际。(3)土壤酶活性与土壤微生物数量相关性不显著,土壤有机质含量与土壤细菌、真菌数量呈极显著正相关,有效P含量与土壤细菌、真菌和放线菌数量呈极显著正相关,速效K含量与过氧化氢酶、酸性磷酸酶活性呈显著正相关,全N、碱解N含量均与脲酶活性呈显著正相关。(4)从土壤肥力综合水平来看,根际非根际,其中根际土壤中西北小蘗柠条短叶锦鸡儿唐古特白刺,研究结果表明西北小蘗和柠条能大幅提高土壤肥力,改良土壤效果较好。     

酸铝胁迫土壤中耐铝大豆根际不同部位细菌群落结构、功能及其对促生菌富集作用的研究

针对酸性土壤中影响作物生产的主要限制因子(pH及其铝毒),选用耐酸铝且具有固氮能力的豆科作物是改良该类土壤、促进农业生产的有效措施之一,至于其所关联的根际微生物是否起到相应的促进作用,一直为国内外学者所关注和探究.为此,本研究以铝耐受型大豆品种基因型(BX10)和铝敏感型大豆品种基因型(BD2)为材料,以酸性红壤为生长...     

The ecosystem concept: A search for order

The development of the ecosystem concept illustrates the search for order in science and shows how individuals and the social-cultural environment of the science influence concept evolution. Ecosystem was coined in 1935 and replaced a variety of inappropriate terms which all referred to a system of biotic and inorganic interactions in nature. It was popularized after the second World War and became a dominant paradigm in ecology world wide. As such, it dominated the development of productivity studies within the International Biological Program. The ecosystem concept became mature when it was realized that the ecosystem was an object that could be studied directly, using conventional scientific methods. Currently the ecosystem concept exists along side a variety of ecological concepts which represent the guiding research foci of ecological subfields.     

基于生态系统方法的大海洋生态系管理

大海洋生态系是指海洋中具有独特海洋学和生态学特征的一个较大的区域,其自然特性要求采用基于生态系统的方法对其进行管理.一系列的国际条约和章程均明确或间接支持采用基于生态系统方法管理大海洋生态系,实现海洋资源的可持续利用.实践方面,加拿大、澳大利亚、美国等采用了基于生态系统方法对其海洋进行管理,全球环境基金会等国际组织实施了一些基于生态系统方法的大海洋生态系项目,加勒比共同体等区域组织建立了旨在实现其渔业可持续发展的区域渔业机制.而基于生态系统方法的大海洋生态系管理能否最终成功实施,不仅是一个科学和法律问题,而且在很大程度上也是一个政治问题,依赖于相关国 家的政治意愿与相互合作的程度.     

Australian water quality guidelines: a new approach for protecting ecosystem health

The Australian and New Zealand Environment and Conservation Council (ANZECC) and the Australian Water Resources Council (AWRC) have developed a National Water Quality Management Strategy which seeks to ensure that the nation's water resources are managed on a sustainable basis. An important element of this strategy are the Australian Water Quality Guidelines which focus on the protection of Australian freshwater and marine ecosystems. Here the aim is to protect biodiversity and maintain the ecological integrity of each marine and freshwater resource. Specific guidelines have been formulated in terms of key indicators of quality, with a single reference value or ranges of reference values provided for guidance. For those indicators where ranges are provided, it is the expectation that State environmental and resource management agencies will undertake local, site-specific investigations of their own systems to define the specific levels to be adopted. For the first time, specific and quantitative biological indicators have been introduced; these are species richness, species composition, primary production, and ecosystem function.As Australia progresses towards broader, more holistic, ecologically-based management of the nation's water resources, the present water quality guidelines must be extended to ecosystem or environmental guidelines, where the maintenance of adequate water quality is seen as only one (albeit important) component. Other considerations must include habitat protection, sediment quality, and stream flow maintenance. This increased emphasis on more ecologically-focused management of Australia's inland and coastal waters will present a number of challenges for the three major groups involved: the community, the managers, and the researchers. These challenges are discussed.Based on a paper presented at a Workshop on Biological Assessment of Aquatic Ecosystem Health, Sydney, 1–2 October 1992.     

Evaluation of the Danish mussel fishery: suggestions for an ecosystem management approach

In Limfjorden, Denmark, an extensive mussel fishery exploits the wild stocks of Mytilus edulis with annual landings of 80,000–100,000 t of mussels. During the last 10 years the impact of mussel dredging on the ecosystem has been studied, including the effect of resuspension of sediment and nutrients and the impoverishment of in- and epi-fauna assemblages. Furthermore, dredging changes the physical structure and complexity of the seabed which affects mussel growth and interactions among zoobenthic species. The blue mussel constitutes the dominant fraction of the zoobenthic suspension feeders, and is important for the transport of material and energy from the pelagic to benthic systems and the control of phytoplankton biomass. In order to evaluate the impact on clearance capacity of a reduction in mussel densities due to mussel dredging, mussel filtration activity measured in situ has been related to the mixing of the water column and the amount of near-bed phytoplankton. Fishery practice for mussel dredging in Limfjorden is discussed in relation to its known impact on the ecosystem and the ecological role of the mussels, and modifications towards an ecosystem management approach and a more sustainable fishery are suggested. The suggested modifications include: a fishery practice where the mussel beds are thinned out when the mussels have attained good quality, and a transplantation practice of mussels from areas with a high mortality to areas with a high growth rate. Both practices intensify the production in a certain area, leaving other areas open for alternative production or for permanent closure for the benefit of the benthic flora and fauna. In addition, other shellfish species represent interesting new resources for fishing or aquaculture. Habitat restoration, such as the relaying of mussel shells from the mussel industry, is another important management tool that should be included in an ecosystem management approach of the mussel fishery. Electronic Publication     

A conceptual framework for ecosystem management based on tradeoff analysis

Three dimensions (natural, social and economic factors) in tradeoff analysis have not been focused in ecology. It is necessary to consider the multi-dimensions through a tradeoff analysis of disturbances to find their positive and negative effects (referred to as two-sidedness). We proposed an 11-step approach to integrate the concepts, methods and examples to understand ecological two-sidedness. We recommend that: (1) ecological complexity and large-scale systematic perspectives need to be integrated; (2) disparate disciplines should be integrated to classify the two-sidedness indicators; (3) models should be adopted to define the characteristic metrics of disturbed ecosystems; (4) researchers need to reconsider evaluation standards and for each indicator with marginal changes; and (5) initial decision-making should refer to the two-sidedness value and that final decision-making should be subject to debate. This approach has great significance for ecosystem management because decision-makers can obtain the superiority and inferiority of disturbance strategies and select optimal strategy.     

我国区域尺度生态系统管理中的几个重要生态学命题

生态系统管理学是研究生态系统管理的理论与实践技术,相关政策和管理策略的综合性应用生态学。当前,综合研究全球或区域尺度生态系统管理模式及其相关的重大科学问题不公是人类社会可持续发展的迫切需要,也是生态系统管理学的重要发展方向和科学任务,为此,本文系统地论述了生态服务功能、可持续性、复杂性和不确定性的综合评价与生态学机制,自然资源保护、生态系统健康以及退化生态系统恢复的生态学基础,生态系统管理的基础生态学过程,生态系统适应性管理的理论与实践,生态系统网络研究,监测和成果集成,区域尺度生态系统管理的综合性专题研究等一系列重要生态学命题,讨论了这些生态学命题的国内外研究进展及其发展方向。     

A computational approach to ecological and economic sustainable harvest management strategies in a multi-species context, with implications for cod recovery plans

Multi-species models consider interactions, particularly predation, between and within species. Traditional harvest management strategies, such as maximum sustainable yield do not account for these interactions. The exploitation of a single species can be maximised, but this does not mean that the entire ecosystem is being harvested sustainably or at its economic maximum. I present a computational technique (evolutionary algorithms) that can simultaneously optimise harvest management strategies of many species and can easily be modified to allow for factors such as stock recovery, sustainable yields or maximum levels of economic sustainable exploitation. I demonstrate that in an ecologically sustainably managed system where a stock is recovering, maximum economic yield is identical to the maximisation of yield by mass. These findings may have important implications for long term conservation aims and long term profits by fishers.     

Models for forest ecosystem management: a European perspective

BACKGROUND: Forest management in Europe is committed to sustainability. In the face of climate change and accompanying risks, however, planning in order to achieve this aim becomes increasingly challenging, underlining the need for new and innovative methods. Models potentially integrate a wide range of system knowledge and present scenarios of variables important for any management decision. In the past, however, model development has mainly focused on specific purposes whereas today we are increasingly aware of the need for the whole range of information that can be provided by models. It is therefore assumed helpful to review the various approaches that are available for specific tasks and to discuss how they can be used for future management strategies. SCOPE: Here we develop a concept for the role of models in forest ecosystem management based on historical analyses. Five paradigms of forest management are identified: (1) multiple uses, (2) dominant use, (3) environmentally sensitive multiple uses, (4) full ecosystem approach and (5) eco-regional perspective. An overview of model approaches is given that is dedicated to this purpose and to developments of different kinds of approaches. It is discussed how these models can contribute to goal setting, decision support and development of guidelines for forestry operations. Furthermore, it is shown how scenario analysis, including stand and landscape visualization, can be used to depict alternatives, make long-term consequences of different options transparent, and ease participation of different stakeholder groups and education. CONCLUSIONS: In our opinion, the current challenge of forest ecosystem management in Europe is to integrate system knowledge from different temporal and spatial scales and from various disciplines. For this purpose, using a set of models with different focus that can be selected from a kind of toolbox according to particular needs is more promising than developing one overarching model, covering ecological, production and landscape issues equally well.     

Perspectives for ecosystem management based on ecosystem resilience and ecological thresholds against multiple and stochastic disturbances

Ecosystem resilience is the inherent ability to absorb various disturbances and reorganize while undergoing state changes to maintain critical functions. When ecosystem resilience is sufficiently degraded by disturbances, ecosystem is exposed at high risk of shifting from a desirable state to an undesirable state. Ecological thresholds represent the points where even small changes in environmental conditions associated with disturbances lead to switch between ecosystem states. There is a growing body of empirical evidence for such state transitions caused by anthropogenic disturbances in a variety of ecosystems. However, fewer studies addressed the interaction of anthropogenic and natural disturbances that often force an ecosystem to cross a threshold which an anthropogenic disturbance or a natural disturbance alone would not have achieved. This fact highlights how little is known about ecosystem dynamics under uncertainties around multiple and stochastic disturbances. Here, we present two perspectives for providing a predictive scientific basis to the management and conservation of ecosystems against multiple and stochastic disturbances. The first is management of predictable anthropogenic disturbances to maintain a sufficient level of biodiversity for ensuring ecosystem resilience (i.e., resilience-based management). Several biological diversity elements appear to confer ecosystem resilience, such as functional redundancy, response diversity, a dominant species, a foundation species, or a keystone species. The greatest research challenge is to identify key elements of biodiversity conferring ecosystem resilience for each context and to examine how we can manage and conserve them. The second is the identification of ecological thresholds along existing or experimental disturbance gradients. This will facilitate the development of indicators of proximity to thresholds as well as the understanding of threshold mechanisms. The implementation of forewarning indicators will be critical particularly when resilience-based management fails. The ability to detect an ecological threshold along disturbance gradients should therefore be essential to establish a backstop for preventing the threshold from being crossed. These perspectives can take us beyond simply invoking the precautionary principle of conserving biodiversity to a predictive science that informs practical solutions to cope with uncertainties and ecological surprises in a changing world.     

Regional sustainability assessment framework for integrated coastal zone management: Satoumi,ecosystem services approach,and inclusive wealth

This study proposes a novel regional sustainability assessment framework for integrated coastal zone management (ICZM). Various ICZM indicators have been developed, but their management insights are not always clear. Our framework integrates three separately developed approaches with an explicit reflection of stakeholders’ values: Satoumi (a Japanese concept of socio-ecological production landscapes, SEPLs), ecosystem services approach (ESA), and inclusive wealth (IW). We suggest that the integration of Satoumi, a uniquely Japanese concept, with the ESA and IW complements each other and increases the effectiveness of all three approaches when applied to ICZM and decision making. Satoumi describes the desired state of a coastal zone. The ESA translates Satoumi into IW and helps explain which changes to ecosystems contribute to the asset quality (i.e., shadow prices). As a sustainability indicator, IW differs from other ecological indicators because it comprises human, natural, and manufactured capital assets and incorporates shadow prices to weigh the contribution of each asset to the present value of social welfare. Shadow prices may capture the quality of capital assets in terms of how much people value them, and can therefore be a direct management target for realizing a desired coastal zone. We propose adding two sustainability criteria, desired state and strong sustainability, to the original IW to make it operational. The framework was tested in Japan’s Seto Inland Sea, and the results were analyzed in depth. Based on the outcomes, we discuss the insights for ICZM and future research. While Satoumi is a Japanese concept, the framework could be applied to other countries where similar SEPLs exist.