共查询到20条相似文献,搜索用时 15 毫秒
1.
Poly-γ-L -glutamic acid has been synthesized by the activated pentachlorophenyl ester polymerization method and the molecule weight of the polymer was found to be 16,000. Comparative conformational studies on the synthetic and on the native polyglutamic acid mbtained from B. anthracis and B. subtilis were carried out using optical rotatory dispersion, circular dichroism, peptide absorption spectrum, and titration data. These results show that poly-γ-glutamic acid does not exhibit any conformational order under the conditions of investigation. At low degrees of ionization, restriction of conformational freedom via random “hypercoiling” of the chain appears likely. 相似文献
2.
The kinetics of hydrogen-deuterium exchange in hen egg-white lysozyme (muramidase) has been followed in aqueous solutions of various pH values and in solutions with various concentrations of lithium chloride, by an infrared absorption measurement. It was found that, in every case, 34% of the total peptide hydrogen atoms exchange relatively slowly with a rate of a first-order reaction. This amount corresponds to 44 peptide groups per molecule, and this is equal to the number of peptide NH-groups which are found to be involved in hydrogen bonds with the carbonyls of other peptide groups in the lysozyme molecule in the crystalline state. Each rate constant determined is in good agreement with the value expected from two simple assumptions. (1) The scheme of the isotope exchange reaction is N ? D → D∗ (? N∗), where N is the native form of the molecule, D a denatured (unfolded) form, and ∗ indicates the deuterated products. (2) The N ? D fluctuation rate is much higher than the rate of the isotope exchange reaction D → D∗. It has been shown that the N ? D transition postulated here is the same as that which can be followed by circular dichroism measurement and by some other physical measurements. The effect of lithium chloride on the exchange reaction rate is solely attributable to the change in the N ? D equilibrium caused by the salt, whereas the effect of pH (in the 5 to 8 range) is wholly ascribed to the catalytic action of the OH− anion on the D → D∗ reaction rate. From the deuterium exchange rate observed, an effective value of the mole fraction of the D form is estimated to be 3 × 10−6in the solution with no lithium chloride at 20 °C and of pH = 5 to 8. 相似文献
3.
Yuhei Morita Hideki Sawai Kozo Hamaguchi Kiyoshi Ikeda 《Bioscience, biotechnology, and biochemistry》2013,77(8):1231-1235
The secondary structure of γ1 globulin from rice embryo was investigated by means of optical rotatory dispersion, circular dichroism and infrared spectroscopy. The optical rotatory dispersion curve of the native γ1 globulin gave a trough at 233mμ with a [m′]233 value of ?2,100°, and the Moffitt-Yang plot gave the parameters of a0= ?237 and b0= ?20. These data suggest the presence of 3% helix and 38%β structure in the molecule. Circular dichroism exhibits a negative extremum at 218 mμ, giving a [θ]R value of ?3,730, which suggests the presence of 16°β structure. Infrared spectrum of a thin film of γ1 globulin showed absorption bands at 695 and 660 cm?1 with a small hump at 615 cm?1 characteristic of the β structure, random coil and α helix, respectively. The protein in heavy water exhibits the absorption maximum at 1,630cm?1 which is also characteristic of the β structure. 相似文献
4.
Infrared spectra of myoglobin, ribonuclease, lysozyme, α-chymotrypsin, α-lactalbumin, and β-lactoglobulin A were obtained in deuterium oxide solution in units of absorbance versus wavenumber from 1340 to 1750 cm?1. The spectra were resolved into Gaussian components by means of an iterative computer program. Resolved characteristic absorption peaks for the two infrared active amide I′ components of antiparallel chain-pleated sheets (β-structure) were obtained. The characteristic amide I′ peaks of α-helical regions and apparently unordered regions overlap in D2O solution. Absorptivity values for the resolved β-structure peak around 1630 cm?1 were estimated on the basis of the known structure of ribonuclease, lysozyme, and β-chymotrypsin. The β-structure content of β-lactoglobulin was estimated to be ca. 48% of α-lactalbumin ca. 18%, and of αs-casein close to zero. The results are in general agreement with conclusions drawn from circular dichroism and optical rotatory dispersion studies. 相似文献
5.
A series of poly(L -glutamic acid) esters have been synthesized and studied by optical rotatory dispersion, x-ray diffraction, and infrared spectrometry. The results obtained emphasize the importance of the outer portions of the side chains in determining both the stability and precise conformation of the α-helix. 相似文献
6.
The optical rotatory dispersion of horse heart ferricytochrome c and of a ferri heme undecapeptide have been determined under various conditions. Analysis of the Soret region makes it possible to characterize three different states of ferricytochrome c. the native state (superposition of a negative and a positive Cotton effect); an intermediate state (single positive Cotton effect whose magnitude Δ[M] is equal to 55,000); a denatured state (single positive Cotton effect whose magnitude Δ[M] is equal to 115,000) in which compared to both the native and intermediate states a more or less important decrease in helix content is observed. The optical rotatory dispersion spectra of the Soret region of the monomeric ferri heme undecapeptide is similar to that of denatured ferricytochrome c. The multiplicity of Cotton effects observed under certain conditions for the hemopeptide is a consequence, resulting from a polymerization, of intermolecular interactions. The comparison of the optical rotatory dispersion spectra of ferricytochrome c and the ferri heme undecapeptide indicates that in the intermediate state interactions remain between the heme group and the portion of the poly pep tide chain absent in the hemopeptide. These interactions disappear in the denatured state. 相似文献
7.
G H Snyder 《Biochemistry》1987,26(3):688-694
The cyanogen bromide fragment comprising residues 115-181 of Kunitz soybean trypsin inhibitor is a soluble random-coil peptide at pH 7 containing two cysteines separated by eight other amino acids in the primary sequence. Four of the six rate constants have been determined for the three disulfide exchange reactions between this fragment and oxidized and reduced forms of N-acetylcysteine methyl ester. The rate constant for intramolecular loop formation in the fragment containing one thiolate anion and one sulfur connected by a disulfide bond to the small cysteine analogue is 0.36 +/- 0.15 s-1 at 23 degrees C in 3 M guanidine hydrochloride. This measurement provides a frame of reference corresponding to formation of a small but sterically unstrained loop, the fast limit for intramolecular disulfide exchange in a random-coil peptide. 相似文献
8.
Optical properties and base pairing of E. coli 5S RNA 总被引:1,自引:0,他引:1
The ultraviolet absorption, optical rotatory dispersion, circular dichroism, and infrared absorption spectra of renatured 5S RNA have been measured at pH 7.0 in 0.1M NaCl at 25° and used to obtain four independent estimates of the number of base pairs. These four estimations are in reaonable agreement and average values of 28 ± 4 G.C and 13 ± 4 A.U. base pairs. 相似文献
9.
Temperature-dependent optical rotatory dispersion properties of helical muscle proteins and homopolymers 总被引:1,自引:0,他引:1
Thermally induced helix–coil transitions of myosin rod, light meromyosin, and tropomyosin were studied by optical rotatory dispersion (ORD). Fractional helicity was calculated from both the Moffitt-Yang parameter, b0, and the corrected mean residue rotation [m′] at 231.4 nm. Between 3 and 30°C, [m′] increases linearly with a slope of 59/°C, whereas b0 is virtually constant, indicating apparently different thermal melting behavior. Poly(L -lysine) and poly(L -glutamic acid) in their helical forms and myoglobin also show a nearly linear temperature dependence of [m′]231.4. Muscle proteins in 6M guanidine hydrochloride and the random-coil forms of the homopolymers exhibit temperature-dependent values of [m′]231.4 and b0. We conclude from these observations that ORD properties of both α-helices and random-coil polypeptides have significant intrinsic temperature dependencies. A new method of estimating fractional helicity as a function of temperature is proposed. 相似文献
10.
The physicochemical properties and chemical constituents of the blue protein from rice bran were investigated. The blue protein was a copper-containing glycoprotein, the molecular weight of which was found to be 18,300 Daltons by the sedimentation equilibrium method assuming the partial specific volume 0.72 cm3 g?1. The hexose and pentose contents were 5.49 and 4.01 g per 100 g protein respectively. The copper content was 0.38% which corresponded to 1.09 atoms per one molecule of the protein. The electron spin resonance spectrum showed that the copper was in a cupric state. The standard oxidation-reduction potential of the copper was found to be +275 mV at 20°C and at pH 7.39. The visible and near infrared absorption maxima were found at 450, 600 and 890 mμ, and the 450 mμ band was optically active in the optical rotatory dispersion exhibiting a large Cotton effect. 相似文献
11.
Steric structure of L-proline oligopeptides. II. Far-ultraviolet absorption spectra and optical rotations of L-proline oligopeptides 总被引:1,自引:0,他引:1
The results of the measurement of the far-ultraviolet absorption spectra of L -proline oligomers in water and acetonitrile are summarized as follows. The monomer has an absorption maximum at 182.5 mμ in acetonitrile. The absorption maximum of the dimer is found at 185 mμ and a shoulder appears around 200 mμ, that is, splitting of the absorption spectrum is observed in the dimer. As the degree of polymerization increases, the position of the shoulder shifts toward the wavelength of the absorption maximum of poly-L -proline II, with an accompanying increase in intensity. We may describe the absorption peak around 203 mμ of poly-L -proline II as identical with the shoulder with an increased intensity. By measurements of optical rotatory dispersion and circular dichroic spectra, it was also confirmed that the appearance of the helical conformation commences at the tetramer. When the number of residues is five or greater, the conformation of the helical structure of poly-L -proline II seems to be completed. 相似文献
12.
The infrared, ultraviolet, circular dichroism, and optical rotatory dispersion spectra of five synthetic polypeptides dissolved in hexafluoroisopropanol are reported. This solvent is useful because it dissolves most proteins and non-ionic polypeptides and also is transparent in spectral regions critical for polypeptide conformational diagnoses. Poly-γ-morpholinylethyl-L -glutamamide has random chain type spectra in this solvent, whereas the spectra of poly-γ-methyl-L -glutamate, poly-L -methionine, poly-ε, N -Carbo-benzoxy-L -lysine, and poly-L -homoserine indicate that these four polypeptides are α-helical. Small but significant variability between the different α-helical polypeptides is seen in their circular dichroism spectra and optical rotatory dispersions. An argument is presented that these differences may be due to slight geometry differences between different α-helices. 相似文献
13.
Simultaneous measurement of optical rotation dispersion and absorption spectra for chiral substances
We present a new method based on optical null methods for simultaneously measuring the optical rotatory dispersion (ORD) and absorption spectra of chiral substances. The optical rotation angle at a specific wavelength can be obtained from the optical nulls of the Malus curves with and without the sample. We use the optical nulls of the two curves as benchmark points and the readings to the right of the benchmark points by a certain angular offset to eliminate the influence of the analyzer on the light intensity and obtain the absorbance of the chiral substance at a specific wavelength. The 4096 pixels of the line scan CCD can measure multiple wavelengths simultaneously so that continuous ORD and absorption spectra can be obtained. The experimental results show that the standard deviation of the specific optical rotation is 0.11 deg mL g−1 dm−1, the standard deviation of the maximum absorption wavelength is 0.45 nm, and that absorbance of the sample varies linearly with the concentration. This method is helpful for simplifying the experiment and has a profound influence on the analysis of the contents and molecular configurations of chiral substances in the future. 相似文献
14.
The influence of pH value on the temperature-dependent polymerisation of β-casein was investigated by the method of light scattering, uitracentrifuge and optical rotatory dispersion. β-Casein used in the experiment was fractionated on DEAE-cellulose according to the method of Gehrke et al.The uitracentrifuge and light scattering data indicated that the temperature-dependent polymerization of β-casein is dependent extremely on pH value and occur easily as the pH value shift toward its isoelectric point, that is, the ability of β-casein to polymerize is connected with the electrostatic forces between molecules.On the other hand the changes in the molecular structure of β-casein was observed from the results of optical rotatory dispersion, and the changes occured is influenced by pH value and temperature and may partially affect on the ability of polymerisation. 相似文献
15.
A theoretical analysis is given of the triple-helix–random-coil transition in a mixed solution of poly(Pro-Pro-Gly)n with two different but defined degrees of polymerization n and n′. Because of the highly cooperative nature of this helix–coil transition, each polypeptide chain tends to form a triple helix with other polypeptide chains with the same degree of polymerization (size recognition). Occurrence of triple helices consisting of polypeptide chains with different degrees of polymerization (error in recognition) is studied in detail as a function of the cooperativity, and n and n′. Implication of this analysis for molecular recognition in general is discussed. 相似文献
16.
Nanosecond optical rotatory dispersion spectroscopy: application to photolyzed hemoglobin-CO kinetics. 总被引:1,自引:0,他引:1
下载免费PDF全文
![点击此处可从《Biophysical journal》网站下载免费的PDF全文](/ch/ext_images/free.gif)
D B Shapiro R A Goldbeck D Che R M Esquerra S J Paquette D S Kliger 《Biophysical journal》1995,68(1):326-334
A standard technique for static optical rotatory dispersion (ORD) measurements is adapted to the measurement of ORD changes on a nanosecond (ns) time scale, giving approximately a million-fold improvement in time-resolution over conventional instrumentation. The technique described here is similar in principle to a technique recently developed for ns time-resolved circular dichroism (TRCD) spectroscopy, although the time-resolved optical rotatory dispersion (TRORD) technique requires fewer optical components. As with static ORD, TRORD measurements may be interpreted by empirical comparisons or may be transformed, via the Kramers-Kronig relations, to more easily interpreted TRCD spectra. TRORD can offer experimental advantages over TRCD in studying kinetic processes effecting changes in the chiral structures of biological molecules. In particular, the wider dispersion of ORD bands compared with the corresponding CD bands means that ORD information may often be obtained outside of absorption bands, a signal-to-noise advantage for multichannel measurements. Demonstration of the technique by its application to ns TRORD and the transform-calculated TRCD of carboxy-hemoglobin (Hb-CO) after laser photolysis is presented. 相似文献
17.
Summary The occurrence of at least three growth inhibitors was demonstrated in the dormant aerial tubers of Dioscorea. One of the inhibitors was isolated in crystalline form and identified as (+)-abscisin II by the infrared and ultraviolet spectra as well as by the optical rotatory dispersion. 相似文献
18.
Kazuya Hayashi Danji Fukushima Koya Mogi 《Bioscience, biotechnology, and biochemistry》2013,77(8):988-994
The molecular conformation of the alkaline proteinase of Aspergillus sojae in aqueous solution was investigated by the optical rotatory dispersion, Cotton effects, infra-red absorption spectra (amide I and V bands), ultraviolet difference spectra, etc. It is concluded that; (1) there are about 10 to 15% of the α-helix and a small amount of the β-structure in the enzyme molecule, but most parts of the peptide chain are present as the disordered structure; (2) the enzyme molecule is compactly folded even in the disordered parts; and (3) the two tryptophan residues involved in the peptide chain are burried in the interior of the molecule. 相似文献
19.
R J Davies 《Journal of molecular biology》1973,73(3):317-327
Polyadenylic acid forms a 2:1 complex with the C-nucleoside formyein B at both pH 7.0, 0.15 m-Na+ and pH 6.0, 0.15 M-Na+. The formation of this complex has been followed by equilibrium dialysis, and by optical rotatory dispersion measurements in the range 333 to 450 nm. At pH 7, melting curves for thermal dissociation of the complex (followed by the optical rotation at 345 nm) show a strongly co-operative helix-coil transition. From the variation of Tm with the free formyein B concentration at this temperature, the partial molar enthalpy of formation of the complex, at the mid-point of the transition, has been calculated as -12.8 kcal./mol of formyein B. Viscometry and optical rotatory dispersion measurements indicate that the structure of the complex at pH 6 is the same as at pH 7, and that it may be formed in preference to the double-helical acid form of poly (A). The structure and properties of the complex are discussed. 相似文献
20.
A critical study of circular dichromism (CD) measurement at the wavelength region around 220 nm was made. Test sample methods gave deviations of abou 20%, at most, between instruments calibrated at 290 nm with D-10-camphorsulfonic acid. A calculation of the CD from optical rotatory dispersion (ORD) data was made for d-pantolactone which gave a CD maximum at 219 nm, [θ]21925 = ?17.3 × 103 in water. A proposal is made to use this value for calibration of CD in the 220-nm region. 相似文献