Genetic signature of population fragmentation varies with mobility in seven bird species of a fragmented Kenyan cloud forest

Habitat fragmentation can restrict geneflow, reduce neighbourhood effective population size, and increase genetic drift and inbreeding in small, isolated habitat remnants. The extent to which habitat fragmentation leads to population fragmentation, however, differs among landscapes and taxa. Commonly, researchers use information on the current status of a species to predict population effects of habitat fragmentation. Such methods, however, do not convey information on species-specific responses to fragmentation. Here, we compare levels of past population differentiation, estimated from microsatellite genotypes, with contemporary dispersal rates, estimated from multi-strata capture-recapture models, to infer changes in mobility over time in seven sympatric, forest-dependent bird species of a Kenyan cloud forest archipelago. Overall, populations of sedentary species were more strongly differentiated and clustered compared to those of vagile ones, while geographical patterning suggested an important role of landscape structure in shaping genetic variation. However, five of seven species with broadly similar levels of genetic differentiation nevertheless differed substantially in their current dispersal rates. We conclude that post-fragmentation levels of vagility, without reference to past population connectivity, may not be the best predictor of how forest fragmentation affects the life history of forest-dependent species. As effective conservation strategies often hinge on accurate prediction of shifts in ecological and genetic relationships among populations, conservation practices based solely upon current population abundances or movements may, in the long term, prove to be inadequate.     

Factors affecting bird richness in a fragmented cork oak forest in Morocco

The cork oak forest of Ma'amora in north-western Morocco was the largest cork oak forest in the world until the beginning of the 20th century. Due to growing land use for agriculture and urbanization, however, this forest has become fragmented into relatively small and isolated patches. The effects of this fragmentation on the diversity of wild animal communities have never been investigated despite the importance of such investigations in elaborating long-term conservation plans of the biodiversity of this forest system. In this study of a sample of 44 forest patches we assessed the relationships between species numbers of wintering, breeding and spring migrant birds and patch size, shape, isolation and vegetation structure. We found that species richnesses of the three studied bird assemblages were strongly related to local vegetation structure, namely to the diversity and abundance of trees and bushes. Patches with higher diversity and cover of trees and bushes support higher numbers of bird species. However, patch size, shape and isolation were not significant predictors of bird richness. These results suggest that bird communities in the studied forest patches were more likely shaped by local habitat suitability rather than the amount of habitat or patch isolation. The results also demonstrate negative effects of current human pressures, namely logging, grazing and disturbance, on the diversity of bird communities in this forest system. This emphasizes the need for urgent management efforts aiming at reducing the negative impacts of forest use by humans on bird diversity in this forest system.     

Traffic noise affects forest bird species in a protected tropical forest

The construction of roads near protected forest areas alters ecosystem function by creating habitat fragmentation and through several direct and indirect negative effects such as increased pollution, animal mortality through collisions, disturbance caused by excessive noise and wind turbulence. Noise in particular may have strong negative effects on animal groups such as frogs and birds, that rely on sound for communication as it can negatively interfere with vocalizations used for territorial defense or courtship. Thus, birds are expected to be less abundant close to the road where noise levels are high. In this study, we examined the effects of road traffic noise levels on forest bird species in a protected tropical forest in Costa Rica. Data collection was conducted in a forest segment of the Carara National Park adjacent to the Coastal Highway. We carried out 120 ten minute bird surveys and measured road noise levels 192 times from the 19th to the 23rd of April and from the 21st to the 28th of November, 2008. To maximize bird detection for the species richness estimates we operated six 12 m standard mist nets simultaneously with the surveys. The overall mist-netting effort was 240 net/h. In addition, we estimated traffic volumes by tallying the number of vehicles passing by the edge of the park using 24 one hour counts throughout the study. We found that the relative abundance of birds and bird species richness decreased significantly with the increasing traffic noise in the dry and wet season. Noise decreased significantly and in a logarithmic way with distance from the road in both seasons. However, noise levels at any given distance were significantly higher in the dry compared to the wet season. Our results suggest that noise might be an important factor influencing road bird avoidance as measured by species richness and relative abundance. Since the protected forest in question is located in a national park subjected to tourist visitation, these results have conservation as well as management implications. A decrease in bird species richness and bird abundance due to intrusive road noise could negatively affect the use of trails by visitors. Alternatives for noise attenuation in the affected forest area include the enforcement of speed limits and the planting of live barriers.     

Mitochondrial phylogeographies of five widespread Eurasian bird species

Five species of Eurasian birds displayed a range of mitochondrial DNA phylogeographic structures, including a single widespread lineage (common sandpiper), two geographically unsorted and closely related lineages (long-tailed tit), three partially overlapping closely related lineages (reed bunting), and two divergent geographically isolated lineages that rival species distinction (red-breasted flycatcher and skylark). Only the red-breasted flycatcher and the skylark displayed congruent phylogeographic structures. These five species represent different stages of diversification and speciation. There was little evidence that natural selection had influenced mitochondrial NADH dehydrogenase subunit 2 (ND2) sequences. In several instances, population growth was hypothesized, based on haplotype distributions within populations.     

Spatial (a)synchrony in population fluctuations of five plant species in fragmented habitats

The spatial scale at which populations show synchronous temporal fluctuations in abundance, relative to the spatial scale over which they can disperse, may influence the persistence of local and regional populations. There have been frequent demonstrations of spatial synchrony in population dynamics of animal populations. But few studies have investigated the degree of spatial synchrony in less mobile taxa, e.g. plants, where life history, dispersal and interaction with the environment would be different due to a sessile phase. This study has during three years investigated the synchrony in local population size changes in four short-lived species, and during a nine-year period for one long-lived species, in a semi-natural grassland landscape in southern Sweden. The spatial scale of this study was less than 15 km, which is quite small in comparison with other studies, but the temporal scale was of similar magnitude as the few studies on plant abundances and synchrony. When using detrended estimates of population size change, a significant pattern of decreasing synchrony with increasing distance was found for the two short-lived species that were most confined to manage semi-natural grasslands. Spatial synchrony was detected up to a few km. However, the species displayed synchrony in different years. The degree of synchrony can thus vary considerably across years and among species. Spatially autocorrelated weather conditions could partly explain the spatial scale of synchrony found during certain time intervals. However, the prevailing asynchrony suggests that local factors dominate the dynamics of the populations at the investigated scale.     

Deforestation in central Chile causes a rapid decline in landscape connectivity for a forest specialist bird species

The abundance of woodland birds in fragmented forest landscapes may depend on the properties of patch networks. Understanding the consequences of deforestation on woodland birds, therefore, necessarily requires determining which changes in landscape structure make a major contribution to the degradation and subdivision of patch networks. In this study, we addressed how accelerated deforestation in central Chile has modified the landscape structure and function for thorn-tailed rayaditos—a woodland specialist bird. Using a graphical approach based on the habitat use and movement patterns of rayaditos, we quantified the reduction of the internal connectivity of components (i.e., connected patch networks) in the last two decades and determined the main mechanisms responsible for this connectivity loss. Forest cover decreased 61.7 % between 1989 and 2009. The component size, the fraction of components with ≥1 occupied patches and the number of patches per component experienced a large decline during the study period. Over time, most forest cover (ca. 80 %) was contained in only two components. The connectivity of components decreased steeply by 90 %. Only the loss of large patches made a highly significant contribution to explaining changes in connectivity, while the removal of stepping stones was marginally significant. The conversion of forest both to shrubland and to peri-urban areas were the only land-use variables explaining connectivity change with effects that changed over time. Conservation measures to ensure persistence of rayaditos populations in central Chile should be focused on the retention of key elements for connectivity.     

Strengthened insectivory in a temperate fragmented forest

Habitat fragmentation modifies ecological patterns and processes through changes in species richness and abundance. In the coastal Maulino forest, central Chile, both species richness and abundance of insectivorous birds increases in forest fragments compared to continuous forest. Through a field experiment, we examined larvae predation in fragmented forests. Higher richness and abundance of birds foraging at forest fragments translated into more insect larvae preyed upon in forest fragments than in continuous forest. The assessed level of insectivory in forest fragments agrees with lower herbivory levels in forest fragments. This pattern strongly suggests the strengthening of food interactions web in forest fragments of coastal Maulino forest.Electronic Supplementary Material Supplementary material is available for this article at and is accessible for authorized users.     

Comparative pharmacokinetics of three non-steroidal anti-inflammatory drugs in five bird species

Information on the pharmacokinetics and pharmacodynamics of anti-inflammatory drugs in birds is scarce. Choice of drug and of dosage is usually empirical, since studies of anti-inflammatory drugs are lacking. In this study, three common veterinary non-steroidal anti-inflammatory drugs (NSAIDs) were administered intravenously to five different bird species. Sodium salicylate, flunixin and meloxicam were selected as anti-inflammatory drugs. These NSAIDs were administered intravenously to chickens (Gallus gallus), ostriches (Struthio camelus), ducks (Anas platyrhynchos), turkeys (Meleagris gallopavo) and pigeons (Columba livia). Plasma concentrations of the drugs were determined by validated high-performance liquid chromatography methods and pharmacokinetic parameters were calculated. Most bird species exhibited rapid elimination of these drugs. Ostriches had the fastest elimination rate for all three NSAIDs, but there were some interesting species differences. Chickens had a half-life that was approximately 10-fold as long as the other bird species for flunixin. The half-life of chickens and pigeons was three-fold as long as the other bird species for meloxicam, and, for salicylic acid, the half-life in pigeons was at least three-five-fold longer than in the other bird species.     

Impact of climatic variations on bird species occupancy rate in a southern European forest

Species that are affected by climatic variations can undergo modification in range and/or abundance. Knowing how individuals or species occupy their habitat is essential to understand how species use their environment, and detecting variations that might affect this use can be determinant in species management. Hierarchical modeling is regularly used to assess for occupancy rate (i.e. proportion of patches occupied in a region), particularly when it is required to consider detectability-related issues. The present study is the first application of the conditional model presented in Dupuis et al. (Biometrics 2010), which is applied in the case of a heterogeneous area that might be divided into homogeneous sub-areas. Their approach is used to study the impact of three consecutive particularly cold winters on a selected set of bird species in a forest of southern France in the context of available prior information on birds detectability. We examined a limited range of factors that might influence the response of some bird species to climate. We considered the case of sedentary, partially migrating and migrating species. We also assessed if the biogeographical origins of the different species affect their occupancy rates. Globally, changes in occupancy rates between 1985 and 1987 indicates for the first time a continentalization of the regional forest fauna, reflected by the expansion of Palearctic and Turkestano-European faunistic type species, with depletion or extinction of European, Turkestano-Mediterranean and Mediterranean sedentary species. We have also shown the importance of prior information.     

Independent colonization of multiple urban centres by a formerly forest specialist bird species

Urban areas are expanding rapidly, but a few native species have successfully colonized them. The processes underlying such colonization events are poorly understood. Using the blackbird Turdus merula, a former forest specialist that is now one of the most common urban birds in its range, we provide the first assessment of two contrasting urban colonization models. First, that urbanization occurred independently. Second, that following initial urbanization, urban-adapted individuals colonized other urban areas in a leapfrog manner. Previous analyses of spatial patterns in the timing of blackbird urbanization, and experimental introductions of urban and rural blackbirds to uncolonized cities, suggest that the leapfrog model is likely to apply. We found that, across the western Palaearctic, urban blackbird populations contain less genetic diversity than rural ones, urban populations are more strongly differentiated from each other than from rural populations and assignment tests support a rural source population for most urban individuals. In combination, these results provide much stronger support for the independent urbanization model than the leapfrog one. If the former model predominates, colonization of multiple urban centres will be particularly difficult when urbanization requires genetic adaptations, having implications for urban species diversity.     

Breeding population size of a fragmented population of a Costa Rican dry forest tree species.

Pollen immigration can offset the effects of genetic drift and inbreeding in small populations. To understand the genetic consequences of forest fragmentation, estimates of pollen flow into remnant fragments are essential. Such estimates are straightforward for plants with singly sired, multiseeded fruits, since the pollen donor genotype for each fruit can be unambiguously reconstructed through full-sib genealogical analyses. Allozyme analyses were used to estimate pollen donor numbers from the progeny of fruits of the tropical dry forest tree Enterolobium cyclocarpum in a small (9.8 ha) fragmented population (N = 11) over three reproductive seasons (1994, 1995, and 1996). These analyses indicate that each tree receives pollen from many pollen donors. When data are pooled for the site, estimated maximum pollen donor pool sizes in all years exceed the number of individuals (56) in the 227 ha study area. Although unidentified pollen donors may be located as close as 250 m to the study trees, the number of unidentified pollen donors indicates that individuals in this forest fragment are part of a large network of reproductively active individuals.     

Hedgerows as an environment for forest plants: a comparative case study of five species

Many areas in Europe are dominated by agricultural land use, and as a consequence, many typical forest plant species suffer from habitat loss and fragmentation. Hedgerows, one of the common elements of rural landscapes, have been considered as potential refuges for these species. The main objective of this study was to examine whether forests and hedgerows differ in environmental conditions, and whether important life-history attributes of the populations differ between the two habitat types. We selected five species commonly found in the region in both forests and hedgerows (Adoxa moschatellina, Anemone nemorosa, Circaea lutetiana, Polygonatum multiflorum and Stellaria holostea), and sampled data on 10 populations of each species in each habitat type, including measurements of light and various soil factors. Hedgerows had higher relative light availability and tended to have higher soil nutrient contents and lower soil water values than forests. The comparison of plant performance values between habitat types did not show consistent patterns across species. Anemone and Polygonatum performed equally well in hedgerows and forests, whereas Stellaria appeared to have a higher fitness in hedgerows. In contrast, Circaea showed a higher reproduction under forest conditions. For Adoxa, the results were somewhat contradictory: whereas the reproductive output of this species was higher in forests, population density was higher in hedgerows. The abiotic factors most closely related to the performance values were relative light and soil water availability. The majority of plant performance values did not differ between hedgerows and forests. We therefore conclude that the tested forest species are capable of growing also in hedgerows and will survive equally well in forest and its “surrogate” habitat.     

Flower-visiting insects of five tree species in a restored area of semideciduous seasonal forest

The reinstatement of biodiversity and ecological processes must be the major goal in restoration projects, which requires the establishment of biological interactions in addition to native plant population recovery. Therefore, we assessed the flower visitors of five tree species in a restored area of Semideciduous Seasonal Forest, in Ribeir?o Preto, SP, Brazil. The specimens were collected using entomological net on flowers of Acacia polyphylla, Aegiphila sellowianna, Croton floribundus, Croton urucurana and Schinus terebinthifolius from October 2007 to September 2008. A total of 139 insect species belonging to five orders were collected. Hymenoptera was the most diverse order collected. From a total of 37 families, Vespidae (15 species), Cabronidae (12), Apidae (10), Halictidae (10), Syrphidae (12), Tachinidae (6) and Hesperidae (7) were the richest ones. Schinus terebinthifolius flowers presented the most abundant and diverse insect visitors (60), suggesting it is an important attractive species to the fauna in restoration programs. Our data suggest that mutualistic interactions between some of these plants and their flower-visiting insects may be in a reinstatement process, and will support the design and monitoring of future restoration efforts.     

Pollen-mediated gene dispersal within continuous and fragmented populations of a forest understorey species, Trillium cuneatum

Pollen movement plays a critical role in the distribution of genetic variation within and among plant populations. Direct measures of pollen movement in the large, continuous populations that characterize many herbaceous plant species are often technically difficult and biologically unreliable. Here, we studied contemporary pollen movement in four large populations of Trillium cuneatum. Three populations, located in the Georgia Piedmont, are exposed to strong anthropogenic disturbances, while the fourth population, located in the Southern Appalachian Mountains, is relatively undisturbed. Using the recently developed TwoGener analysis, we extracted estimates of the effective number of pollen donors (N(ep)), effective mating neighbourhood size (A(ep)) and the average distance of pollen movement (delta) for each population. We extended the TwoGener method by developing inference on the paternal gametic contribution to the embryo in situations where offspring genotypes are inferred from seeds and elaiosomes of species with bisporic megagametogenesis. Our estimates indicate that maternal plants do not sample pollen randomly from a global pool; rather, pollen movement in all four populations is highly restricted. Although the effective number of pollen donors per maternal plant is low (1.22-1.66) and pollen movement is highly localized in all populations, N(ep) in the disturbed Piedmont populations is higher and there is more pollen movement than in the mountains. The distance pollen moves is greater in disturbed sites and fragmented populations, possibly due to edge effects in Trillium habitats.     

A password for species recognition in a brood-parasitic bird

Recognition of conspecifics is an essential precursor of sexual reproduction. Most mammals and birds learn salient features of their parents or siblings early in ontogeny and later recognize individuals whose phenotypes match the mental image (template) of relatives closely enough as conspecifics. However, the young of brood parasites are reared among heterospecifics, so social learning will yield inappropriate species recognition templates. Initially, it was inferred that conspecific recognition in brood parasites depended on genetically determined templates. More recently it was demonstrated that learning plays a critical role in the development of parasites' social preferences. Here we propose a mechanism that accommodates the interaction of learned and genetic components of recognition. We suggest that conspecific recognition is initiated when a young parasite encounters some unique species-specific signal or "password" (e.g. a vocalization, behaviour or other characteristic) that triggers learning of additional aspects of the password-giver's phenotype. We examined the possibility that nestlings of the obligately brood-parasitic brown-headed cowbird (Molothrus ater) could use a species-specific vocalization, the "chatter", as a password. We found that six-day-old nestlings responded (begged) significantly more frequently to playbacks of chatters than to other avian sounds and that two-month-old fledglings approached playbacks of chatters more quickly than vocalizations of heterospecifics. Free-living cowbird fledglings and adults also approached playbacks of chatters more often than control sounds. Passwords may be involved in the ontogeny of species recognition in brood parasites generally.     

Seasonal changes in bird species diversity at the interface between forest and reed-bed

Habitat edges are landscape structures that have a major influence on animal communities. Bird communities' response to habitat edges is influenced by the season and habitat characteristics but it is still poorly understood how communities respond to structural complex (i.e. natural) edges. Inter-seasonal changes in bird species diversity were quantified at a homogeneous, sharp interface between two habitats that host distinct and well-represented bird communities: a mature broad-leaved forest and a compact reed-bed area. Resident species diversity was found higher during winter, both in terms of species richness and evenness. The presence of the reed-bed nesting migrants during the summer season did not notably modify the seasonally reversed diversity pattern; the overall evenness was higher during the winter season while the overall species richness did not differ between the two seasons. Thus, contrary to the expected regional seasonal diversity pattern, the forest – reed-bed interface is, in winter, a local bird diversity hotspot. The possible causes and implications for conservation of this phenomenon are discussed.     

Habitat disturbance reduces seed dispersal of a forest interior tree in a fragmented African cloud forest

Habitat fragmentation and disturbance are known to impact animals and plants in different ways, depending on species' characteristics and the type and scale of habitat modification involved. In contrast, direct or indirect ramifications on mutualistic relationships between plants and animals are less clear, possibly because general patterns are confounded by the diffuse nature of many of these interactions. Here, we examine how fragment size and/or severe disturbance of a Kenyan mountain cloud forest affects the frugivore community and seed removal of a large-seeded, bird-dispersed tree of the forest interior, for three consecutive years. Forest deterioration reduced avian visitation and seed removal rates independent of fragment size, consistently so despite strong temporal variation in fruit production over the three-year study. In disturbed forest fragments, seed removal rates were on average 3.5 times lower than in more intact ones. Strong differences in both visitation and seed removal rates were largely attributable to shifts in frugivore assemblages, characterized by loss or reduced abundance of the most effective seed dispersers, most of which were forest specialists. Although some disturbed fragments benefited from visits of non-forest dependent seed dispersers, such 'resilience' was not predictable or reliable in time or space. We conclude that disruption of seed disperser-seed interactions in highly fragmented and disturbed tropical forests may be persistent in time when resiliency is inadequate, possibly posing long-term effects on tree communities.     

Characteristics of bird species using forest and agricultural land covers in southern Costa Rica

Our understanding of why tropical forest species differ in their ability to inhabit agroecosystems is limited, despite the link between this ability and the likelihood of population decline for species inhabiting regions undergoing widespread conversion of forest to agriculture. We used logistic regression and data from southern Costa Rica to develop a model based on natural history characteristics to distinguish between forest species that did or did not use agricultural land covers. We sampled birds along 15 3.0-km routes, seven in forest and eight in agriculture, five times over three years. Each species was classified as an F-species, detected only in forest, a G-species, detected in both forest and agriculture, or an A-species, detected only in agriculture. Thirty percent of species were F-species, 42% were G-species, and 28% were A-species. Based on the logistic regression model, the likelihood of being a G-species, as opposed to an F-species, was low for species that were dependent on forest interior, had a stenophagous diet, and a small elevational range. Weight, resident versus migrant status, and whether or not a species was insectivorous, were not significant predictors of being a G-species. For all F–G species pairs, the model correctly predicted the G-species 70% of the time. The model provides a first step in identifying those characteristics that predispose forest species to use agricultural land. In addition, our results indicate that the structurally simple agricultural systems of the study region are of limited value for a large proportion of the regional species pool.     

Influence of environmental and spatial variables on regional distribution of forest plant species in a fragmented and changing landscape

During the past several centuries, forests in Europe and large parts of North America have been subject to extensive forest clearance. The last several decades, however, numerous new forest patches have been established onto former agricultural land. As a result, the present forest area often consists of a mixture of small forest patches of different age, area, habitat quality and connectivity embedded within a hostile agricultural landscape. In these patchy landscapes, distribution patterns of plant species may be affected by both regional and local factors, although the relative importance of both is still poorly understood. In this study, we investigated distribution patterns of 113 forest plant species in a fragmented landscape. Species abundances at the regional scale conformed to a clearly unimodal abundance distribution which we believe to be related to 1) environmental heterogeneity due to succession and 2) inequality in migration rates. Patch incidence was significantly related to life form, which in turn was correlated to seed mass and dispersal mechanism. Multiple logistic regressions showed that presence/absence of 59 species studied was significantly affected by patch connectivity, patch area and age for 35, 30 and 34 species, respectively. The results of this study indicate that distribution patterns of forest plant species are influenced by both local and regional factors. Moreover, they also demonstrate that next to spatial aspects of fragmentation, temporal patterns of landscape change may have far-reaching effects on presence/absence patterns of plant species and therefore should be incorporated in studies dealing with regional population structures of plants.