Oxidation of hemoglobin by arenediazonium salts. The influence of dioxygen

The reactions of human hemoglobin with p-nitro- and p-chlorobenzenediazonium tetrafluoroborates in the presence and absence of molecular oxygen have been investigated in kinetic detail. The oxidation of iron(II) occurs with first order rate dependence on both the hemoglobin and diazonium salt concentrations, but inverse first order dependence on the concentration of molecular oxygen characterizes reactions performed in the presence of O₂. In the absence of O₂, nitrobenzene is the only product observed from hemoglobin oxidation by p-NO₂C₆H₄N₂⁺BF₄^?, and a 1:1 stoichiometry exists between nitrobenzene produced and Fe(II) oxidized. In the presence of O₂, p-nitrophenol is the dominant product, but product yield is dependent on the ratio of reactants. Electron transfer to the diazonium salt rather than its corresponding diazohydroxide or diazoate is inferred from the relative absence of pH dependence on the rate of oxidation. The composite results are consistent with a mechanism for hemoglobin oxidation that requires molecular oxygen dissociation from oxyhemoglobin prior to oxidation by the diazonium salt. Implications of this investigation for the mechanism of arylhydrazine reactions with hemoglobin are discussed.     

Synthesis and x-ray structure of a Hg(II) complex with adenine N(1)-oxide. A model for mercury binding to DNA

The synthesis and crystal structure of the adenine N(1)-oxide complex with mercury(II) chloride, (C₅H₅N₅O)HgCl₂ are reported. Crystals of the coordination compound belong to the monoclinic system, space group P2₁/n with the following primary crystallographic data: a = 6.685(1) Å, b = 11.798(2) Å, c = 10.155(1) Å, β = 100.22(1)°, V = 906.04 ų, Z = 4. The structure was elucidated by conventional Patterson and Fourier methods and refined by the full matrix least-squares technique on the basis of 1977 observed reflections to an R value of 0.074. The basic unit of the structure is a dimer, with a centre of symmetry, consisting of two HgCl₂ moieties and two adenine N(1)-oxide ligands. A polymeric structure results from the bridging interactions of chloride ions. Adenine N(1)-oxide acts as a bidentate bridging ligand, coordinating through N(7) and O(1). The coordination geometry around the mercury ion is a distorted square pyramid with N(7) and three chlorines (two of which are centro-symmetrically related) forming the square plane and O(1) occupying the axial position. Hg also interacts indirectly with N(6) through a Cl

HN hydrogen bond. Principal intracomplex geometrical parameters are as follows: HgN(7) = 2.61(1) Å, HgO(1) = 2.55(1) Å, HgCl(1) = 2.330(3) Å, HgCl(2) = 2.318(3) Å, HgCl(2′) = 3.347(3) Å. The cis angles range from 77.5° to 107.9° and the two trans angles are 155.5° and 163.1°. The centro-symmetrically related bases overlap partially and pack at a distance of 3.2 Å. The glide-related bases are linked by a hydrogen bond, N(9)H

O(1) and are inclined to one another by 109.7°. The results are compared with those derived from spectroscopic and other physicochemical studies on metal interaction with adenine N(1)-oxide. Based on the present structural observations and earlier experimental results a possible mechanism is proposed for mercury interaction with DNA.     

Stoichiometry and structure of a complex of acidic ribosomal proteins

The acidic proteins B-L13 (homologous to Escherichia coli protein L7/L12) and B-L8, from the 50 S subunit of Bacillus stearothermophilus ribosomes, form a stable complex. Trypsin digestion of ribosomes generates an N-terminal fragment of B-L13 (approximately residues 1 to 47) which can associate with B-L8, displacing intact B-L13, and bind to B-L13-deficient ribosomes. Displacement of B-L13 from the B-L8 · B-L13 complex by the B-L13 N-terminal fragment causes a change in gel electrophoretic mobility of the complex, and titration of the complex with fragment indicates unambiguously that it contains four molecules of B-L13. Evidence is presented that B-L13 forms a dimer in solution, and that the dimer associates intact with B-L8. Reconstituted 50 S subunits in which B-L13 is replaced by its N-terminal fragment have the same functional properties as 50 S subunits missing B-L13 altogether: polypeptide synthesis is reduced but not abolished; ability to bind elongation factor EF-G and GTP is severely reduced; and peptidyl transferase activity and ability to associate with a 30 S subunit · Phe-tRNA · poly(U) complex are unaffected (relative to intact 50 S subunits).     

The complex formation of copper(II) with GHL and HSA

The formation constants for complexes of copper(II) with GHL have been determined by means of pH titrations and ESR spectroscopy in aqueous solutions. GHL has an extremely high affinity for copper(II) and forms very stable 1:1 complexes and a comparatively weak 1:2 complex. The ? amino group of GHL seems not to be involved in complex formation as can be deducted from both equilibrium constants and ESR spectroscopy. The ternary system copper(II)-GHL-HSA was investigated by ESR spectroscopy and optical absorption spectroscopy in aqueous solution at physiological pH (7.4). At equimolar concentrations, copper(II), HSA and GHL form a ternary complex.     

The preparation and crystal structure analysis of a 2:1 complex between L-lysine and copper(II) chloride

The crystal structure of bis(L-lysine)Cu(II) chloride dihydrate has been determined by X-ray analysis. The complex crystallizes in the monoclinic space group P2₁, with cell dimensions a = 5.189(1), b = 16.988(3), c = 11.482(2) Å, β = 93.57(1)°. The position of the Cu atom was found from a Patterson synthesis, the remaining atoms were located with DIRDIF. The structure was refined by least-squares to R = 0.060 and R_w = 0.065 for 2637 observed reflections. The copper(II) atom has an essentially square planar coordination with the two lysine molecules chelated via the carboxy oxygen and the α-amino nitrogen. However the two chlorine atoms form weak interactions with the metal to complete a strongly tetragonally elongated six-fold coordination. The two aliphatic chains have rather different geometries and are extended in a zig-zag mode. Extensive hydrogen bonding links the complex and the water molecules together.     

An aromatic schiff base stabilised as a coordinated enol iminium zwitterion by complex formation with a series of divalent metal ions

The Schiff base N-(2-hydroxy-3-carboxy-1-naphthylidine)-4-methyl-2-sulphonic acid aniline (bonsaH₃) has been found to react with a range of divalent metal ions (Mg²⁺, Mn²⁺, Co²⁺, Ni²⁺ and Zn²⁺ and UO₂²⁺ to give red-yellow insoluble complexes (bonsaH)_m(H₂O)_n. The solid state diffuse reflectance spectra of all the complexes have an intense visible band at ca. 470 nm. This fact, together with evidence from infrared spectra and room-temperature magnetic-moment measurements, suggests that in all cases the ligand is coordinated to the metal ion in the solid state in the enol-iminium zwitterionic form. The ¹H NMR spectra of the Mg²⁺ and Zn²⁺ complexes in DMSO-d₆ indicate that a different structure is adopted in this solvent. Comparisons with the spectra of bonsa-H₃ and (bonsa-H₂)K·H₂O suggest that the solution structure is that of an enol-imine.     

Reactivity of ferric Aplysia myoglobin towards anionic ligands in the acidic region: Proposal for a structural model

The equilibrium binding properties of ferric Aplysia myoglobin have been studied for a number of anionic ligands in the pH region from neutrality to ~4. For all the ligands studied, the intrinsic affinity of Aplysia metmyoglobin increases by more than one order of magnitude as the pH is lowered well below neutrality.The spectroscopic properties of the ligand-free and the ligand-bound molecules show a pH dependence with apparent pK values of 4.7 and 6.1, respectively.On the basis of temperature-jump experiments, a kinetic scheme has been proposed and rate constants have been measured for the binding of azide at pH 6 and pH 4.Kinetic and thermodynamic features match each other, suggesting that a single ionizing group is responsible for all the observed effects.By inspection of the three-dimensional structure, this group has been tentatively identified as the proximal imidazole. Protonation of the N_ε of proximal histidine would be associated to the rupture of the proximal bond, giving rise to the formation of a tetra-co-ordinate, ligand-free and penta-co-ordinate, ligand-bound molecule.     

Synthesis and crystal and molecular structure of a methyl N,N-diethylcarbamylmethylenephosphonato dysprosium thiocyanate complex

Bis-Methyl N,N-diethylcarbamylmethylenephosphonato dysprosium thiocyanate, Dy[O₂P(OCH₃)CH₂C(O)N(C₂H₅)₂]₂(NCS) was prepared from the combination of ethanolic solutions of Dy(NCS)₃·xH₂O and (CH₃O)₂P(O)CH₂C(O)N(C₂H₅)₂. The complex was characterized by infrared and NMR spectroscopy, and single crystal X-ray diffraction methods. The crystal structure was determined at 25 °C from 3727 independent reflections by using a standard automated diffractometer. The complex was found to crystallize in the monoclinic space group P2₁/c with a = 13.282(4) Å, b = 19.168(5) Å, c = 9.648(2) Å, β = 90.09(2)°, Z = 4, V = 2456.4 ų and ?_cald = 1.72 g cm^?3. The structure was solved by standard heavy atom techniques, and blocked least-squares refinement converged with R_f = 4.7% and R_wF = 4.9%. The Dy atom is seven coordinate and bonded in a bidentate fashion to two anionic phosphonate ligands [O₂P(OCH₃)CH₂C(O)N(C₂H₅)₂^?] through the carbonyl oxygen atoms and one of two phosphonate oxygen atoms. In addition, each Dy atom is coordinated to two phosphonate oxygen atoms from two neighboring complexes and to the nitrogen atom of a thiocyanate ion. This coordination scheme gives rise to a two-dimensional polymeric structure. Some important bond distances include DyNCS 2.433(8) Å, DyO(carbonyl)_avg 2.39(2) Å, DyO(equat. phosphoryl)_avg 2.303(8) Å, DyO(axial phosphoryl)_avg 2.25(2), PO(phosphoryl)_avg 1.493(3) Å and CO(carbonyl)_avg 1.25(1) Å.     

Synthesis of polymer-bound nitridomolybdenum(VI) complexes as model polymer complexes of nitrogenase: effect of polymer environment in the Hydrolytic formation of ammonia

Polymer-bound nitridomolybdenum(VI) complexes, MoNCl₃(polystyrene-bound bipyridyl) (I), MoNCl₂(bpy)(polystyrene-bound benzylthiolato) (II), and MoNCl (S-t-Bu)(bpy)(polystyrene-bound benzylthiolato) (III), were synthesized by the reaction of MoNCl₃(CH₃CN)_x or MoNCl₃(bpy) with polystyrene-bound bipyridyl or benzylthiol. The polymer-bound nitridomolybdenum complexes were characterized by photo-acoustic and resonance Raman spectra. Hydrolysis or hydrolytic reduction of the nitridomolybdenum(VI) complexes resulted in the formation of ammonia in the following order of yield: III & II & I. Coordination of the polymer thiolato ligands is thus important in enhancing reductive cleavage of the nitridomolybdenum bond.     

A new, convenient method for the rapid analysis of inorganic pyrophosphate.

A new method for the rapid analysis of inorganic pyrophosphate (PP_i) which utilizes the enzyme ATP sulfurylase is described. All components of the assay system are commercially available and inexpensive. The assay is linear over the range of 0.5–50.0 nmol of PP_i and is not affected by inorganic phosphate. ATP and PP_i can both be analyzed using this method.     

The OR control system of bacteriophage lambda. A physical-chemical model for gene regulation

A quantitative model has been developed for processes in the bacteriophage lambda that control the switchover from lysogenic to lytic modes of growth. These processes include the interactions of cI repressor and cro proteins at the three DNA sites of the right operator, OR, the binding of RNA polymerase at promoters PR and PRM, the synthesis of cI repressor and cro proteins, and the degradative action of recA during induction of lysis. The model is comprised of two major physical-chemical components: a statistical thermodynamic theory for relative probabilities of the various molecular configurations of the control system; and a kinetic model for the coupling of these probabilities to functional events, including synthesis of regulatory proteins cI and cro. Using independently evaluated interaction constants and rate parameters, the model was found capable of predicting essential physiological characteristics of the system over an extended time. Sufficiency of the model to predict known physiological properties lends credence to the physical-chemical assumptions used in its construction. Several major physiological characteristics were found to arise as "system properties" through the non-linear, time-dependent, feedback-modulated combinations of molecular interactions prescribed by the model. These include: maintenance of the lysogenic state in the absence of recA-mediated cI repressor degradation; induction of lysis and the phenomenon of subinduction; and autogenous negative control of cro. We have used the model to determine the roles, within the composite system, of several key molecular processes previously characterized by studies in vitro. These include: co-operativity in cI repressor binding to DNA; interactions between repressors and RNA polymerase (positive control); and the monomer-dimer association of cI repressor molecules. A major role of cI repressor co-operativity is found to be that of guaranteeing stability of the lysogenic state against minor changes in cI repressor levels within the cell. The role of positive control seems to be that of providing for a peaked, rather than monotonic, dependence of PRM activity on cI repressor level, while permitting PR activity to be a step function. The model correlates an immense body of studies in vivo and in vitro, and it makes testable predictions about molecular phenomena as well as physiological characteristics of bacteriophage lambda. The approach developed in this study can be extended to include more features of the lambda system and to treat other systems of gene regulation.     

Synthesis of a new class of polydentate ligands: [bis(2-imidazolyl)methyl] amino-thioether-thiols

A new class of polydentate bis(imidazole)-thioether-thiol polydentate ligands has been synthesized by the reactions of functionalized primary amines with bis(2-imidazolyl)nitromethane. The molecules contain a bis(2-imidazolyl)methylamino group attached to chains of varying length with thiol (3, 23) and thioether/thiol (7,11,15,19) binding sites.     

The effect of chronic ethanol consumption on temperature-dependent physical properties of liver mitochondrial membranes

We have reported that the monovalent ionophore monensin causes undersulfated chondroitin sulfate biosynthesis in cultured chondrocytes. In order to clarify the mechanism of this diminished sulfation, we have measured the rate of incorporation of sulfate into chondrocytes and assayed the cellular ATP levels. We have also measured sulfatase activity, the incorporation of ³⁵SO₄ into 3′-phosphoadenosine 5′-phospho[³⁵S]sulfate and endogenous sulfotransferase activity in the cell-free extracts. We find that: (1) The incorporation of ³⁵SO₄ into the free sulfate pool in chondrocytes was not inhibited by monensin. (2) The ATP levels of monensin-treated chondrocytes were the same as control cells. (3) There was no sulfatase activity in both control and monensin-treated chondrocytes. (4) Enzymatic analyses revealed that ³⁵SO₄ incorporation into 3′-phosphoadenosine 5′-phospho[³⁵S]sulfate and subsequent sulfotransferase activity were not inhibited in the presence of monensin. At present the most tenable hypothesis to account for monensin causing undersulfated chondroitin sulfate synthesis is that the ionophore impairs the access of proteoglycans to the sulfotransferases in the luminal walls of the Golgi structures.     

The effect of barium on the contractile mechanism of isolated dog uteri: Influence of the hormonal state

The effect of barium chloride (Ba²⁺) on the contractile mechanism of isolated dog uteri was analysed under three different hormonal states: control, estradiol-treated (E) and estradiol + progesterone-treated (E + P). The maximal contractile effect of Ba²⁺ was significantly depressed in the E + P group. Tachyphylaxis developed rather quickly ($\text{t}{}_{\mathrm{<mtext>1</mtext><mtext>2</mtext>}}\text{? 10}\text{min}$) to successive additions of 1.0 mM Ba²⁺ following the Ca²⁺ removal from the nutrient solution. The $\text{t}{}_{\mathrm{<mtext>1</mtext><mtext>2</mtext>}}$ was further reduced in the E or the E + P groups. No tachyphylaxis was observed when the much higher concentration of 30.0 mM Ba²⁺ was employed.In the normal nutrient solution, the calcium-blocker D600 (methoxyverapamil) produced a non-competitive antagonism of Ba²⁺ which was not reversed by an increase in extracellular Ca²⁺ concentration. In excess-potassium depolarizing solution, the dose-response curves to both Ca²⁺ and Ba²⁺ were displaced to the right by compound D600. The Schild plot yielded straight lines suggestive of competitive antagonism with the similar pA₂ values of 8.57 for Ca²⁺ and 8.35 for Ba²⁺.These results suggest that Ba²⁺ has a dual mechanism of action on isolated dog uteri, depending on the concentration employed. At low doses (1.0 mM), the contractile effect of Ba²⁺ is due to a release of intracellular Ca²⁺, an action which can be modulated by the ovarian hormones. The effect of high concentrations of Ba²⁺ (30.0 mM) seems to be the result of a direct interaction with the contractile proteins and is independent of the animal's hormonal state. The results also suggest that the access of Ba²⁺ to the uterine fibre is possibly through the same Ca²⁺ channel which is acted upon by compound D600.