Filamentous fungal population and species diversity from the continental slope of Bay of Bengal,India

Filamentous fungal diversity from the sediments of the continental slope of Bay of Bengal was studied. Sediment samples were collected during two voyages in 2004 and 2005. Filamentous fungal population from both the cruises showed a range of 5.17–59.51 CFU/g and 3.47–29.68 CFU/g, respectively. Totally 16 fungal genera were recorded from both the cruises. Aspergillus was found to be the dominant genus and the overall percentage occurrence was as follows: Deuteromycotina 74%, Ascomycotina 17%, Basidiomycotina 4% and non-sporulating 5%. Diversity indices were calculated and during both the cruises species richness (d) varied from 0.912 to 3.622 and 1.443 to 4.588; evenness (J′) varied from 0.9183 to 1.000 and 0.8322 to 1.000 and Shannon–Wiener index (H′ log 2) varied from 0.9183 to 1.000 and 1.000 to 3.690. The higher diversity was found in Divipoint transect (northern Bay of Bengal). 95% confidence interval and ellipse showed that the stations were well lying within the funnel. Cluster analysis and MDS grouped the northern transects which showed higher diversity. BVSTEP resulted in isolation of 23 species which were most influential in the marine filamentous fungal diversity of the continental slope of Bay of Bengal. Thus, a lower population range and higher diversity of marine filamentous marine fungi in the sediments of the continental slope of Bay of Bengal was recorded.     

The chemistry of aquatic phosphate: inorganic processes in rivers

Phosphate levels in turbid rivers with low calcium concentrations are controlled by a solid ferric hydroxide-phosphate solution present in colloidal suspensions or suspended particulates. A chemical model, based on this behavior, is consistent with data from dialyzed suspensions of iron and phosphorus prepared in the laboratory as well as from the Amazon, Zaire, Orinoco, Sepik, Delaware, Hudson, Negro, and Mullica rivers. Data indicate that solid Fe/P ratios are related to solid activity coefficients by an exponential parameter, y, which represents the deviation of solid-solution from ideality. The model is mathematically consistent with Langmuir and Freundlich sorption isotherms under equilibrium conditions, and demonstrates that the isotherm parameters consist of a combination of selected constants and variables defined by solution theory. The reciprocal of the model parameter-y is shown to be equivalent to the exponential parameter in a Freundlich isotherm. The Langmuir parameter and Freundlich exponential parameter are related through the model parameter-y in systems at constant pH and ionic strength.From a presentation given at the Third International Workshop on Phosphorus in Sediments, Woudscholten/Utrecht, The Netherlands, September 30, 1991, under the auspices of: International Association of Theoretical and Applied Limnology, Limnological Institute (Royal Netherlands Academy of Arts and Sciences), Institute for Inland Water Management and Waste Water Treatment, and the Netherlands Institute for Sea Research.     

The distribution and diversity of culturable aerobic heterotrophic benthic bacteria in the continental slope of the Bay of Bengal: Linked abiotic factors, including a tsunami

The culturable aerobic heterotrophic benthic bacterial population and community structure in relation to the physico-chemical parameters in the continental slope of the Bay of Bengal was studied. In addition, diversity indices were calculated and pretsunami (in 2004) and post-tsunami (in 2005) diversity values were compared. Sediment samples were collected from two cruises in the depth zone of 214–1000 m (10°36′ N–20°01′ N and 79°59′ E–87°30′ E). The vertical distribution of the total heterotrophic bacterial population during both cruises was higher in the top section (0–3 cm) of the sediment. The average total heterotrophic bacterial population was in the range of 0.42–37.38 × 10⁴ CFU/g to 1.66–19.73 × 10⁴ CFU/g dry sediment weight during the two cruises, respectively. The limiting physico-chemical factors were sediment pH, sediment temperature, TOC, porosity, and clay as revealed from multiple regression (r = 0.75) and BIOENV (Partial Correlation ρω = 0.447) analyses. The shannon-Wiener index (H′ log e), Simpson index (D), Margalef index (d) and Pielou’s evenness index (J′) were found to be higher in the 1000 m depth stations. Cluster analysis showed that the 500 m depth stations clustered either with the 200 m or with the 1000 m stations. The 200 m depth stations never formed a cluster with the 1000 m stations. Pre-tsunami diversity indices at two depth ranges (200 m and 1000 m) were higher than those of the post-tsunami indices, which was quite evident from the cluster analysis as well. This study confirms the effect of the tsunami surge in the sediments of the continental slope of the Bay of Bengal in the marine ecosystem, which is also attributed to the temporal variation of the heterotrophic bacterial population and diversity.     

Distributions of forest birds and butterflies in the Andaman islands, Bay of Bengal: nested patterns and processes

The distributional patterns of forest birds and butterflies in the Andaman islands, an oceanic chain located off SE Asia, were tested for nestedness. Both taxa were highly nested. Nestedness could be due to colonization or extinction processes, area or distance effects or nestedness of habitats. Nestedness in forest bird distributions were strongly influenced by area and habitat related factors. Habitats were significantly nested in all three island groups, however most strongly for the North Andamans. However forest bird distributions in the North Andamans, as indicated by row order in the packed matrix, was not correlated with habitat diversity, suggesting that habitat related factors alone cannot account for these patterns. Other causal influences could be passive sampling, where common and abundant species and habitats are more likely to have a widespread distribution than rare species and habitats. The nested subset pattern seen in two unrelated taxa suggests that the Andamans are extinction dominated and that the protection of forests on large islands is critical for the conservation of its biodiversity.     

Subsurface chlorophyll maxima in the north-western Bay of Bengal

The depth profiles of phytoplanlkton pigments in the north-westernBay of Bengal are generally characterized by a subsurface chlorophyllmaximum The occurrence of subsurface chlorophyll maxima is discussedin relation to other information on water column propertiesin the study area. The gradual deepening of the subsurface maximumfrom inshore to offshore waters coincides with the deepeningof the thermocline Significant correlation between the depthof the subsurface chlorophyll maximum and depth of thermoclinesuggests that the formation of the subsurface maximum is influencedby the presence of seasonal thermocline. Further the subsurfacechlorophyll maximum is noticed within the depth ranges of ammoniummaximum and intracline, suggesting the regenerated nutrientsmay also extend a more important influence on the subsurfacemaxima. The presence of chlorophyll b and a high ratio of chlorophylla/phaeopigments in the subsurface layers substantiates the formationof the subsurface maximum due to growth of the photosyntheticallyactive phytoplanlkton community     

The mechanism of rock phosphate solubilization in the rhizosphere

Summary A simple model is described, and experimentally tested, for predicting the rate of dissolution of rock phosphates in soil, including the effect of solubilization by plant roots. The sensitivity of the model to its input parameters is assessed and it is seen that plants may significantly increase their P uptake by acid secretion. The model provides a rational basis for the selection of P solubilizing crops and inter-crops.     

Modifications in the enzymatic assay for inorganic phosphate.

A recent publication from this laboratory (1) described an enzymatic assay for inorganic phosphate (P_i) which eliminates the need for standards and, through mild reaction conditions, avoids the hydrolysis of labile organic phosphates. Those features are advantageous, particularly for P_i measurements in biological samples. However, subsequent inquiries from other laboratories and our own experience indicated that the assay, as described (1), does not perform well. Specifically, it was found that the assay range was 10-fold narrower than that reported, completion times were 3- to 5-fold longer, and the reaction with P_i standards was only 90–95% complete.Because of these deficiencies we have systematically evaluated every aspect of the assay and have found that the difficulties are eliminated and the assay is improved and simplified by the following changes; (i) Triethanolamine is used in place of Tris as the assay buffer; (ii) triose phosphate isomerase is eliminated and the levels of other enzymes are adjusted to obtain optimum reaction conditions; (iii) ammonium sulfate is removed from the analytical enzymes. The modified procedure described below is more convenient, is linear up to P_i concentrations of 0.1 μmol/ml in the assay, gives complete reaction of P_i standards and quantitative recovery of P_i added to biological extracts, and comes to stable endpoints in 30 min or less (depending on the amount of P_i in the assay).     

Biogeochemical processes in the groundwater discharge zone of urban streams

The influence of biogeochemical processes on nitrogen and organic matter transformation and transport was investigated for two urban streams receiving groundwater discharge during the dry summer baseflow period. A multiple lines of evidence approach involving catchment-, and stream reach-scale investigations were undertaken to describe the factors that influence pore water biogeochemical processes. At the catchment-scale gaining stream reaches were identified from water table mapping and groundwater discharge estimated to be between 0.1 and 0.8 m³ m^?2 d^?1 from baseflow analysis. Sediment temperature profiles also suggested that the high groundwater discharge limited stream water infiltration into the sediments. At the stream reach-scale, dissolved organic carbon (DOC) and dissolved organic nitrogen (DON) concentrations were higher in stream water than in groundwater. However, DOC and DON concentrations were greatest in sediment pore water. This suggests that biodegradation of sediment organic matter contributes dissolved organic matter (DOM) to the streams along with that delivered with groundwater flow. Pore water ammonium (NH₄ ⁺) was closely associated with areas of high pore water DOM concentrations and evidence of sulfate (SO₄ ^2?) reduction (low concentration and SO₄:Cl ratio). This indicates that anoxic DOM mineralization was occurring associated with SO₄ ^2? reduction. However the distribution of anoxic mineralization was limited to the center of the streambed, and was not constrained by the distribution of sediment organic matter which was higher along the banks. Lower sediment temperatures measured along the banks compared to the center suggests, at least qualitatively, that groundwater discharge is higher along the banks. Based on this evidence anoxic mineralization is influenced by groundwater residence time, and is only measurable along the center of the stream where groundwater flux rates are lower. This study therefore shows that the distribution of biogeochemical processes in stream sediments, such as anoxic mineralization, is strongly influenced by both the biogeochemical conditions and pore water residence time.     

Nitrogen limitation in the tropical waters of the Bay of Bengal

A 3 year study (1986–1989) was carried out in the Bay of Bengal off Madras in order to understand the influence of physical and chemical variables on the occurrence, abundance and productivity of its phytoplankton. Biochemical oxygen demand and nutrient concentrations were highest near the mouth of river Cooum. Pigments and net primary production in nearshore waters varied between 4.1 and 1113 C mg m^–3 h^–1, while in offshore waters the maximum was only 201 mg C m^–3 h^–1. Multiple regression analysis with net photosynthesis as the dependent variable and other variates as the independent variables revealed that nutrients did not account for much variation in net photosynthesis in nearshore stations but contributed significantly to variation in offshore station. Analyses of seawater collected during two cruises in coastal waters at 18–22° N latitude revealed that nitrogen was low in comparison to phosphorus and could be limiting primary production in the surface waters of the Bay.     

Zooplankton composition and diversity in western Bay of Bengal

The biomass of zooplankton ranged from 1 – 90 ml/100 m³in the western Bay of Bengal from off Sri Lanka to south ofCalcutta in June 1978. The coastal belt between Madras and Visakhapatnamwhere upwdling is known to occur during the season showed higherstanding stock. Copepoda formed the dominant group followedby Decapod a and Chaetognatha. Species composition of variousgroups and their distribution is discussed. A general inverserelationship between biomass and species diversity was the trend.Diversity was higher in the oceanic realm.     

Biogeochemical processes in the algal-bacterial mats of the Urinskii alkaline hot spring

The structure and production characteristics of microbial communities from the Urinskii alkaline hot spring (Buryat Republic, Russia) have been investigated. A distinctive characteristic of this hot spring is the lack of sulfide in the issuing water. The water temperature near the spring vents ranged from 69 to 38.5 degrees C and pH values ranged from 8.8 to 9.2. The total mineralization of water was less than 0.1 g/liter. Temperature has a profound effect on the species composition and biogeochemical processes occurring in the algal-bacterial mats of the Urinskii hot spring. The maximum diversity of the phototrophic community was observed at the temperatures 40 and 46 degrees C. A total of 12 species of cyanobacteria, 4 species of diatoms, and one species of thermophilic anoxygenic phototrophic bacteria, Chloroflexus aurantiacus, have been isolated from mat samples. At temperatures above 40 degrees C, the filamentous cyanobacterium Phormidium laminosum was predominant; its cell number and biomass concentration were 95.1 and 63.9%, respectively. At lower temperatures, the biomass concentrations of the cyanobacterium Oscillatoria limosa and diatoms increased (50.2 and 36.4%, respectively). The cyanobacterium Mastigocladus laminosus, which is normally found in neutral or slightly acidic hydrothermal systems, was detected in microbial communities. As the diatom concentration increases, so does the dry matter concentration in mats, while the content of organic matter decreases. The concentrations of proteins and carbohydrates reached their maximum levels at 45-50 degrees C. The maximum average rate of oxygenic photosynthesis (2.1 g C/m2 day), chlorophyll a content (343.4 mg/m2), and cell number of phototrophic microorganisms were observed at temperatures from 45 to 50 degrees C. The peak mass of bacterial mats (56.75 g/m2) occurred at a temperature of 65-60 degrees C. The maximum biomass concentration of phototrophs (414.63 x 10(-6) g/ml) and the peak rate of anoxygenic photosynthesis [0.42 g C/(m2 day)] were observed at a temperature of 35-40 degrees C.     

Biogeochemical processes in the algal-bacterial mats of the Urinskii alkaline hot spring

The structure and production characteristics of microbial communities from the Urinskii alkaline hot spring (Buryat Republic, Russia) have been investigated. A distinctive characteristic of this hot spring is the lack of sulfide in the issuing water. The water temperature near the spring vents ranged from 69 to 38.5°C and pH values ranged from 8.8 to 9.2. The total mineralization of water was less than 0.1 g/liter. Temperature has a profound effect on the species composition and biogeochemical processes occurring in the algal-bacterial mats of the Urinskii hot spring. The maximum diversity of the phototrophic community was observed at the temperatures 40 and 46°C. A total of 12 species of cyanobacteria, 4 species of diatoms, and one species of thermophilic anoxygenic phototrophic bacteria, Chloroflexus aurantiacus, have been isolated from mat samples. At temperatures above 40°C, the filamentous cyanobacterium Phormidium laminosum was predominant; its cell number and biomass concentration comprised 95.1 and 63.9%, respectively. At lower temperatures, the biomass concentrations of the cyanobacterium Oscillatoria limosa and diatoms increased (50.2 and 36.4%, respectively). The cyanobacterium Mastigocladus laminosus, which is normally found in neutral or slightly acidic hydrothermal systems, was detected in microbial communities. As the diatom concentration increases, so does the dry matter concentration in mats, while the content of organic matter decreases. The concentrations of proteins and carbohydrates reached their maximum levels at 45–50°C. The maximum average rate of oxygenic photosynthesis [2.1 g C/(m² day)], chlorophyll a content (343.4 mg/m²), and cell number of phototrophic microorganisms were observed at temperatures from 45 to 50°C. The peak mass of bacterial mats (56.75 g/m²) occurred at a temperature of 65–60°C. The maximum biomass concentration of phototrophs (414.63 × 10^?6 g/ml) and the peak rate of anoxygenic photosynthesis [0.42 g C/(m² day)] were observed at a temperature of 35–40°C.     

Characterisation of inorganic phosphate transport in bovine articular chondrocytes.

In mineralising tissues such as growth plate cartilage extracellular organelles derived from the chondrocyte membrane are present. These matrix vesicles (MV) possess membrane transporters that accumulate Ca(2+) and inorganic phosphate (P(i)), and initiate the formation of hydroxyapatite crystals. MV are also present in articular cartilage, and hydroxyapatite crystals are believed to promote cartilage degradation in osteoarthritic joints. In the present study, P(i) transport pathways in isolated bovine articular chondrocytes have been characterised. P(i) uptake was temperature-sensitive and could be resolved into Na(+)-dependent and Na(+)-independent components. The Na(+)-dependent component saturated at high concentrations of extracellular P(i), with a K(m) for P(i) of 0.17 mM. In solutions lacking Na(+), uptake did not fully saturate, implying that under these conditions carrier-mediated uptake is supplemented by a diffusive pathway. Both Na(+)-dependent and Na(+)-independent components were sensitive to the P(i) transport inhibitors phosphonoacetate and arsenate, although a fraction of Na(+)-independent P(i) uptake was resistant to these anions. Total P(i) uptake was optimal at pH 7.4, and reduced as pH was made more acidic or more alkaline, an effect that represented reduced Na(+)-dependent influx. RT-PCR analysis confirmed that two members of the NaPi III family, Pit-1 and Pit-2, are expressed, but that NaPi II transporters are not.     

Regulation of inorganic phosphate transport systems in Saccharomyces cerevisiae.

A kinetic study of Pi transport with 32Pi revealed that Saccharomyces cerevisiae has two systems of Pi transport, one with a low Km value (8.2 microM) for external Pi and the other with a high Km value (770 microM). The low-Km system was derepressed by Pi starvation, and the activity was expressed under the control of a genetic system which regulates the repressible acid and alkaline phosphatases. The function of the PHO2 gene, which is essential for the derepression of repressible acid phosphatase but not for the derepression of repressible alkaline phosphatase, was also indispensable for the derepression of the low-Km system.