Additions to the List of Graphidaceae (Lichenized Ascomycetes) in Pakistan

Biology Bulletin - As part of comprehensive study of lichen diversity of northern areas of Pakistan using molecular and morphological approaches, we found four species of the family Graphidaceae....     

Cactus species turnover and diversity along a latitudinal transect in the Chihuahuan Desert Region

A standardized sampling method was used to evaluate turnover (β diversity) among cactus species assemblages along a 798 km long latitudinal megatransect across the Chihuahuan Desert Region, from north-central Mexico to southern Texas. A total of 71 cactus species were found along the megatransect, 66.2% of which appeared at low frequencies, mostly as a consequence of their highly discontinuous distribution pattern. At the scale the study was conducted, there was always species turnover among cactus assemblages. The rate of turnover among contiguous sites primarily fluctuated from low to medium, but when all site combinations were considered (contiguous and non-contiguous), medium β diversity values were predominant (β = 0.331–0.66); however, 25.4% of the site pair combinations registered high values (β = 0.661–1.0). Our results showed that turnover among cactus species assemblages in the CDR does not consist for the most part of a process of species succession in the geographic space. Instead, we concluded that the continuous spatial changes in cactus species composition are primarily explained by the commonly intermittent distribution patterns of the species, by the presence in the megatransect of species at the margin of their distribution range, and, to a lesser extent, by the existence of narrowly endemic species.     

Genetic diversity and population structure in four Cirsium (Asteraceae) species

The present study considers genetic diversity of 38 populations in 4 Cirsium species of the genus Cirsium Mill. (Asteraceae), occurring in different ecological regions and tries to compare degree of genetic variability among the species with wide geographical distribution versus endemic C. pyramidale showing confined geographical distribution. The results showed that the endemic species has similar value of genetic diversity parameters as the species with wider distribution. We also studied the possible admixture nature of these populations and tried to understand the relation between genetic changes, geographical distribution and polyploidy level and chromosome pairing in these species. ISSR analysis showed population difference in allele composition and frequency. Clustering and PcoA ordination produced different groupings in each species, while STRUCTURE and reticulation analyses revealed high degree of genetic admixture and gene exchange among populations as well as allelic rearrangement. No significant correlation was observed between geographical distance and genetic distance of the populations and AMOVA test revealed no significant difference among populations in each species studied. However, high amount of within population variation occurred in all 4 species indicating their cross-pollination nature and high genetic admixture. The populations also varied in chiasma frequency and chromosome pairing as well as the occurrence of heterozygote translocations all creating more variability to be used by plants for local adaptation.     

Mycorrhizal features and fungal partners of four mycoheterotrophic Monotropoideae (Ericaceae) species from Yunnan, China

We provide a preliminary report of the mycobionts found within four Monotropoideae (Ericaceae) species from China: Monotropa uniflora, Hypopitys monotropa, Monotropastrum humile and Monotropastrum sciaphilum (a rare endemic species never previously studied for mycorrhizae). Such achlorophyllous Monotropoideae plants obtain their carbohydrates from mycorrhizal fungi linking them to surrounding trees, on which these fungi form ectomycorrhizae. Since Monotropoideae were rarely studied in continental Asia, the root systems of the four species sampled in Yunnan were examined using morphological and molecular methods. All the roots of these four species exhibit a typical monotropoid mycorrhizal morphology, including a fungal mantle, a Hartig net and hyphal pegs. In M. uniflora and M. humile mycorrhizae, cystidia typical of Russula symbionts covered the fungal mantle. ITS barcoding revealed that Russulales were the most frequent colonizers in all species, but Hypopitys monotropa displayed various additional mycorrhizal taxa. Moreover, a few additional ectomycorrhizal and saprotrophic Basidiomycota taxa were identified in the three other species, challenging that these four Monotropoideae species are as strictly fungal specific as the other Monotropoideae species hitherto studied. Moreover, a comparison with accompanying fungus sporocarps revealed that the fruiting fungal community significantly differed from that associated with the Monotropoideae roots, so that a clear fungal preference was evident. Finally, four fungal species were found on more than one Monotropoideae species: this contrasted with previous reports of sympatrically growing mycoheterotrophic plants, which did not reveal any overlap. This again challenges the idea of strict fungal specificity.     

Rates of oxygen consumption in four species of seabird at Palmer Station, Antarctic peninsula

1. We determined standard metabolic rates (SMR) of wild-caught adults of the Adelie penguin, southern giant fulmar, blue-eyed shag, and South Polar skua at Palmer Station, Antarctica, during January and February 1981. Oxygen consumption was measured volumetrically in a closed system at temperatures between 2 and 12 degrees C. 2. Mean SMR varied between 0.82 l O2/kg per hr for male fulmars and 1.30 l O2/kg per hr for unsexed adult skuas. Values were 174-198% of those predicted by the Lasiewski-Dawson equation for nonpasserines. 3. The SMR of the Adelie penguin was considerably higher than that reported in other studies and higher than most values for other species of penguins. 4. Our measurements of oxygen consumption agree with some estimates of metabolism based upon loss of mass by fasting birds during incubation.     

Genetic variation and clonal diversity in four clonal sedges (Carex) along the Arctic coast of Eurasia

We studied the structure of genetic variation (at both ramet- and genet-level) and clonal diversity within and among populations in the four closely related arctic clonal sedges Carex bigelowii, C. ensifolia, C. lugens and C. stans by use of allozyme markers. Compared to other sedges and arctic plants, the studied taxa all had high levels of genetic variation, both within populations and taxa. These taxa contained most of the total gene diversity (H(T)) within populations and a small part of the diversity among populations (G(ST) ranged 0.05--0.43). Carex bigelowii had genetic variation (H(S) = 0.173, mean for populations) at a comparable level to other outbreeding arctic plants and to other widespread, rhizomatous and mainly outbreeding Carex species. In contrast, C. ensifolia (H(S) = 0.335), C. lugens (H(S) = 0.339) and C. stans (H(S) = 0.294) had within-population variations that were higher than in most other studied Carex species and for arctic plants in general. Genetic variation was not related to any tested environmental variable, but it was lower in areas deglaciated only 10,000 years BP compared to areas deglaciated 60,000 years BP or not glaciated at all during the Weichselian. All the populations were multiclonal, except for two populations of C. stans that were monoclonal. In contrast to genetic variation, clonal diversity decreased with latitude and did not differ between areas with different times of deglaciation. In accordance with previous studies, C. bigelowii and C. lugens were found to be outbreeding, while C. ensifolia and C. stans had mixed mating systems.     

Structure and diversity of soil algal communities from Cierva Point (Antarctic Peninsula)

Cyanobacteria and eukaryotic algae, together with bacteria and fungi, are known to be primary colonizers of mineral soils throughout Antarctica. Their species diversity and soil coverage were studied in 18 soil polygons located at Cierva Point, Antarctic Peninsula. Undisturbed assemblages were dominated by filamentous Cyanobacteria and diatoms, whilst almost 40% of the 49 species recorded were observed only after enrichment culture. Nearly all of the isolates from enrichment cultures were Chlorophyta and Tribophyceae. This revealed a higher degree of complexity than reported for similar communities on Signy Island. Water content and concentrations of nutrients were determined at four representative sites, and did not appear to account for the large inter-polygon variation found in species composition and relative frequencies of occurrence. Variables describing community development were not significantly correlated with either area of the polygons or the minimum distance between them. This suggested that these features are not an important short-range barrier to dispersal for those “weed” species dominating the community. Conversely, the relative frequencies of some of the most common species showed significant correlations with species diversity and soil coverage, and it is suggested that biotic interactions could account to a larger extent for community structure than previously reported from Signy Island fellfields. Accepted: 12 October 1999     

Genetic variation and population structure of krill (Euphausia superba) in the Atlantic sector of Antarctic waters and off the Antarctic peninsula

Summary Samples of Antarctic krill Euphausia superba from 16 locations in the Weddell Sea, Scotia Sea and on the west coast of the Antarctic Peninsula were analysed for protein variation using enzyme electrophoresis techniques. Analysis of allele distributions indicate that samples from all locations are part of a single breeding population of krill. Significant departures from random mating expectations were observed in the distribution of electrophoretic phenotypes of the enzymes esterase and glucose phosphate isomerase. Possible explorations of these results are advanced, but they do not materially affect conclusions concerning population structure. The spatial and temporal distribution of electrophoretically detected genetic variation in Atlantic and Pacific sector krill stocks is discussed by comparing the results of this study with those of previous authors working with E. superba.     

Lichenized species of Omphalina (Tricholomataceae) in the Iberian Peninsula

Abstract:A taxonomic revision of the lichenized species of the genus Omphalina in the Iberian Peninsula is presented, based upon fungal and lichen herbarium material, as well as on fresh collections. Relevant morphological and ecological features are discussed and a diagnostic key is provided. Four lichenized species, O. ericetorum, O. hudsoniana, O. meridionalis and O. velutina, are recognized. A squamulose vegetative thallus (Coriscium -type) is present only in O. hudsoniana, while the other three species form a thallus of hyphal globules (Botrydina -type). Anatomical features of the vegetative thallus cannot be used to distinguish between these last three species. Whilst O. hudsoniana is known only from the montane belt of the Eurosiberian Region and O. meridionalis seems to be restricted to the Mediterranean Region, living in more or less humid sites of the Supramediterranean belt, the other two species, O. ericetorum and O. velutina, are widespread.     

Abundance and diversity of peracarid taxa (Crustacea, Malacostraca) along a transect through the Beagle Channel, Patagonia

During the joint Chilean-German-Italian Magellan “Victor Hensen” Campaign in November 1994, samples were taken on a cruise of the RV Victor Hensen in order to obtain faunistic information from the Beagle Channel. Peracarida are an important fraction of the macrobenthos and were sampled in high numbers. Using an epibenthic sledge, 104,618 individuals were collected in total, comprising 62,860 Amphipoda, 14,685 Cumacea, 17,992 Isopoda, 7,168 Mysidacea and 1,893 Tanaidacea. To allow comparisons between stations, these numbers were standardized to a 1,000 m trawling distance, yielding about 368,000 individuals from all stations. Peracarida were most abundant at station 1213, southeast of Isla Picton, in the oceanic area close to the eastern entrance of the Beagle Channel (166,361 ind./1,000 m). Generally, stations off the eastern entrance were characterized by a high number of Peracarida. In the Beagle Channel itself, however, the abundance decreased from east to west with a single peak in peracarid number in the channel east of Punta Yámana. Numbers were much lower at the western entrance (792 ind./1,000 m) and even fewer Peracarida were collected in the Magdalena Channel off Punta Sánchez. Lowest numbers were recorded close to the glacier Romanche and west of Isla Picton at two locations. The composition of peracarid crustaceans was analysed in relation to the background of hydrographical and sedimentological differences, nutrient availability, and knowledge of the other associated fauna in the Beagle Channel. The available data lead us to conclude that abundance and composition of peracarid taxa in and south of the Beagle Channel (off the eastern entrance) seem to be influenced mainly by sediment composition and hydrographical characteristics as indicated above. Received: 18 October 1996 / Accepted: 19 December 1996     

Size scaling of photophysiology and growth in four freshly isolated diatom species from Ryder Bay,western Antarctic peninsula

Diatoms are one of the dominant groups in phytoplankton communities of the western Antarctic Peninsula (WAP). Although generally well‐studied, little is known about size dependent photophysiological responses in diatom bloom formation and succession. To increase this understanding, four Antarctic diatom species covering two orders of magnitude in cell size were isolated in northern Marguerite Bay (WAP). Fragilariopsis sp., Pseudo‐nitzschia cf. subcurvata, Thalassiosira cf. antarctica, and Proboscia cf. alata were acclimated to three different irradiances after which photophysiology, electron transport, carbon fixation, and growth were assessed. The small species Fragilariopsis sp., Pseudo‐nitzschia cf. subcurvata, and large species Proboscia cf. alata showed similar photoacclimation to higher irradiances with a decrease in cellular chlorophyll a and an increase in chlorophyll a specific absorption and xanthophyll cycle pigments and activity. In contrast, pigment concentrations and absorption remained unaffected by higher irradiances in the large species Thalassiosira cf. antarctica. Overall, the small species showed significantly higher growth rates compared to the large species, which was related to relatively high light harvesting capacity and electron transport rates in the smaller species. However, photophysiological responses related to photoinhibition and photoprotection and carbon fixation showed no relationship with cell size. This study supports the dominance of small diatoms at low irradiances during winter and early spring, but does not provide photophysiological evidence for the dominance of large diatoms during the phytoplankton bloom in the WAP. This suggests that other factors such as grazing and nutrient availability are likely to play a major role in diatom bloom formation.     

Genetic diversity of five Kobresia species along the eastern Qinghai-Tibet plateau in China

Plants of the genus Kobresia are alpine grass species of high ecological and economic importance. Vegetative growth is the dominant means of reproduction for the Kobresia. Studies suggest that substantial vegetative growth can reduce genetic diversity and renders populations less able to buffer changing and extreme conditions. Kobresia are dominant species in the Qinghai-Tibet plateau in China where they face harsh conditions and frequent disturbance. The genetic diversity of five Kobresia species (K. humilis, K. royleana, K. kansuensis , K. tibetica and K. setchwanensis) from the Qinghai-Tibet plateau was assessed. The results reveal high genetic diversity at the population level for all of the species and there does not appear to be a relationship between altitude and genetic diversity. AMOVA analysis shows that most genetic variability resides among individuals within populations, whereas only a minor portion is found among populations. Of the five species, K. royleana and K. kansuensis have the highest levels of gene flow and the lowest genetic differentiation. While K. setchwanensis has the lowest gene flow and the greatest genetic differentiation. The level of gene flow between populations and the mating system play a critical role in the genetic structure of these Kobresia populations. Despite the predominance of vegetative growth enough sexual reproduction occurs to maintain the relatively high genetic diversity in Kobresia populations.     

Patterns of fungal diversity and composition along a salinity gradient

Estuarine salinity gradients are known to influence plant, bacterial and archaeal community structure. We sequenced 18S rRNA genes to investigate patterns in sediment fungal diversity (richness and evenness of taxa) and composition (taxonomic and phylogenetic) along an estuarine salinity gradient. We sampled three marshes—a salt, brackish and freshwater marsh—in Rhode Island. To compare the relative effect of the salinity gradient with that of plants, we sampled fungi in plots with Spartina patens and in plots from which plants were removed 2 years prior to sampling. The fungal sediment community was unique compared with previously sampled fungal communities; we detected more Ascomycota (78%), fewer Basidiomycota (6%) and more fungi from basal lineages (16%) (Chytridiomycota, Glomeromycota and four additional groups) than typically found in soil. Across marshes, fungal composition changed substantially, whereas fungal diversity differed only at the finest level of genetic resolution, and was highest in the intermediate, brackish marsh. In contrast, the presence of plants had a highly significant effect on fungal diversity at all levels of genetic resolution, but less of an effect on fungal composition. These results suggest that salinity (or other covarying parameters) selects for a distinctive fungal composition, and plants provide additional niches upon which taxa within these communities can specialize and coexist. Given the number of sequences from basal fungal lineages, the study also suggests that further sampling of estuarine sediments may help in understanding early fungal evolution.     

Genetic diversity and differentiation in six species of the genus Rhinanthus (Orobanchaceae)

The intricate genus Rhinanthus L. contains many taxonomically unresolved taxa. The assessment of genetic diversity may clarify the differentiation and taxonomic relationships between species and help to determine their mating system, which is important for understanding the future prospects of populations and species. Isozymes were used to assess the mating system, genetic diversity, and differentiation in R. rumelicus, R. osiliensis, R. wagneri, R. alectorolophus, and R. angustifolius from sect. Cleistolemus and R. minor from sect. Rhinanthus. Genetic diversity at species level was found to be higher in widespread R. angustifolius and R. rumelicus compared with insular endemic R. osiliensis. Positive inbreeding coefficient revealed dominant inbreeding in endemic R. osiliensis and R. wagneri. We also detected a significant departure from Hardy–Weinberg equilibrium in some populations of R. rumelicus and R. angustifolius. The common R. alectorolophus and R. minor and several populations of R. rumelicus and R. angustifolius displayed a mixed mating mode. Six studied species divided into three distinct clusters. Rhinanthus alectorolophus was the most differentiated taxon among the investigated species. The species of sect. Cleistolemus formed two distinct groups. The first cluster consisted only of R. alectorolophus while another comprised R. rumelicus, R. osiliensis, R. wagneri, and R. angustifolius, indicating their close affinity. Thus, our isozyme results call into question the monophyly of section Cleistolemus and the taxonomic position of R. alectorolophus.     

Genetic structure of desert ground squirrels over a 20-degree-latitude transect from Oregon through the Baja California peninsula

The genetic structure of populations over a wide geographical area should reflect the demographic and evolutionary processes that have shaped a species across its range. We examined the population genetic structure of antelope ground squirrels (Ammospermophilus leucurus) across the complex of North American deserts from the Great Basin of Oregon to the cape region of the Baja California peninsula. We sampled 73 individuals from 13 major localities over this 2500-km transect, from 43 to 22 degrees north. Our molecular phylogeographical analysis of 555 bp of the mitochondrial cytochrome b gene and 510 bp of the control region revealed great genetic uniformity in a single clade that extends from Oregon to central Baja California. A second distinct clade occupies the southern half of the peninsula. The minimal geographical structure of the northern clade, its low haplotype diversity and the distribution of pairwise differences between haplotypes suggest a rapid northward expansion of the population that must have followed a northward desert habitat shift associated with the most recent Quaternary climate warming and glacial retreat. The higher haplotype diversity within the southern clade and distribution of pairwise differences between haplotypes suggest that the southern clade has a longer, more stable history associated with a southern peninsular refugium. This system, as observed, reflects both historical and contemporary ecological and evolutionary responses to physical environmental gradients within genetically homogeneous populations.     

Genetic diversity of Kappaphycus species (Gigartinales,Rhodophyta) in the Philippines

The mariculture of eucheumatoids (species of Kappaphycus and Eucheuma) in the Philippines has had a long history, dating back to the 1970s. Over this period, a number of varieties have been brought into domestication; some are now widely distributed and farmed in various regions of the country, but a significant number appear to have a more restricted distribution and are farmed only in certain areas. The taxonomy of many of these seaweed cultivars and their phylogenetic relationships still remain to be resolved at the specific and subspecific levels. In this study, two mitochondrial DNA markers, COI-5P region and cox2-3 intergenic spacer, were used to assess the genetic diversity of the farmed varieties and a few specimens collected from the wild. Analysis using haplotype networks revealed several new haplotypes for K. alvarezii, K. malesianus and K. striatus, mainly from specimens collected from eastern and southwestern regions of the Philippines. The inferred phylogenetic relationships based on both mtDNA markers resolved the identity of all the materials used in the study at the species level. We present molecular evidence that K. malesianus, in addition to K. alvarezii, K. cottonii, K. inermis, K. procrusteanus and K. striatus (and, hence, all currently recognized species of Kappaphycus) occurs in the Philippines. Collectively, these observations suggest that the Philippine archipelago has richer genetic diversity of farmed and wild Kappaphycus than do the other geographic regions, consistent with the hypothesis that the Philippines is, or is part of, the centre of Kappaphycus biodiversity in the world. These findings also reveal an untapped diversity that can potentially be exploited for improving the commercial production of these carrageenophytes.     

Standing fine root mass and production in four Chinese subtropical forests along a succession and species diversity gradient

Background and aims

The influences of succession and species diversity on fine root production are not well known in forests. This study aimed to investigate: (i) whether fine root biomass and production increased with successional stage and increasing tree species diversity; (ii) how forest type affected seasonal variation and regrowth of fine roots.

Methods

Sequential coring and ingrowth core methods were used to measure fine root production in four Chinese subtropical forests differing in successional stages and species diversity.

Results

Fine root biomass increased from 262 g·m^?2 to 626 g·m^?2 with increasing successional stage and species diversity. A similar trend was also found for fine root production, which increased from 86 to 114 g·m^?2 yr ^?1 for Cunninghamia lanceolata plantation to 211–240 g·m^?2 yr ^?1 for Choerospondias axillaries forest when estimated with sequential coring data. Fine root production calculated using the ingrowth core data ranged from 186 g·m^?2 yr ^?1 for C. lanceolata plantation to 513 g·m^?2 yr ^?1 for Lithocarpus glaber – Cyclobalanopsis glauca forest.

Conclusions

Fine root biomass and production increased along a successional gradient and increasing tree species diversity in subtropical forests. Fine roots in forests with higher species diversity exhibited higher seasonal variation and regrowth rate.