Circadian methane oxidation in the root zone of rice plants

In the root zone of rice plants aerobic methanotrophic bacteria catalyze the oxidation of CH₄ to CO₂, thereby reducing CH₄ emissions from paddy soils to the atmosphere. However, methods for in situ quantification of microbial processes in paddy soils are scarce. Here we adapted the push–pull tracer-test (PPT) method to quantify CH₄ oxidation in the root zone of potted rice plants. During a PPT, a test solution containing CH₄ ± O₂ as reactant(s), Cl^? and Ar as nonreactive tracers, and BES as an inhibitor of CH₄ production was injected into the root zone at different times throughout the circadian cycle (daytime, early nighttime, late nighttime). After a 2-h incubation phase, the test solution/pore-water mixture was extracted from the same location and rates of CH₄ oxidation were calculated from the ratio of measured reactant and nonreactive tracer concentrations. In separate rice pots, O₂ concentrations in the vicinity of rice roots were measured throughout the circadian cycle using a fiber-optic sensor. Results indicated highly variable CH₄ oxidation rates following a circadian pattern. Mean rates at daytime and early nighttime varied from 62 up to 451 μmol l^?1 h^?1, whereas at late nighttime CH₄ oxidation rates were low, ranging from 13 to 37 μmol l^?1 h^?1. Similarly, daytime O₂ concentration in the vicinity of rice roots increased to up to 250% air saturation, while nighttime O₂ concentration dropped to below detection (<0.15% air saturation). Our results suggest a functional link between root-zone CH₄ oxidation and photosynthetic O₂ supply.     

Population dynamics of the rice root nematode Hirschmanniella oryzae on monsoon rice in Myanmar

Soil and root samples of the short crop cycle duration rice variety Yadanartoe were collected at 10-days intervals, starting at 20 days after transplanting until 20 days after harvest, from September 2008 until January 2009, to study the population dynamics of Hirschmanniella oryzae on (rainfed) monsoon rice. Plant growth stages, the ambient air and soil temperature, rainfall and relative humidity during the sampling period were noted. The soil type is clay and has a pH of 5.1. In the roots, three nematode population density peaks were observed during the sampling period: at the maximum tillering stage, at the milky grain stage, and between harvest and 10 days after harvest. The highest peak (483 H. oryzae/g roots) was observed at the milky grain stage. The lowest root population density (46 H. oryzae/g roots) was found at harvesting. Population densities in the soil followed more or less the same trend as in the roots. After harvesting, the soil population density increased. During our observation, we did not find any effects of environmental conditions on the population densities of H. oryzae. However, it was found that the population dynamics of H. oryzae were influenced by the plant growth stage.     

Seasonal fluctuation in nematode population associated with mango,Mangifera indica L.

Abstract

Mango, Mangifera indica L. Family – Anacardiaceae, an economically important fruit tree, was selected to study the effect of seasonal changes of the population of plant parasitic nematodes viz., Hoplolaimus indicus, Helicotylenchus indicus, Rotylenchulus reniformis, Tylenchorhynchus mashoodi, Tylenchus filiformis and Hemicriconemoides mangiferae around the roots. The population was investigated at 10, 20 and 40 cm depths. It was observed that seasonal fluctuations have a direct effect on the nematode population. The population was larger at 10 cm depth followed by 20 and 40 cm depths. The largest nematode population was observed when the percent soil moisture was high. Both soil temperature and soil moisture were equally important. The soil pH also affected indirectly the nematode population densities.     

Rice root-knot nematode (Meloidogyne graminicola) infestation in rice

Rice (Oryza sativa) is an important staple food crop for majority of human population in the world in general and in Asia in particular. However, among various pests and diseases which constitute important constraints in the successful crop production, plant parasitic nematodes play an important role and account for yield losses to the extent of 90%. The major nematode pests associated with rice are Ditylenchus angustus, Aphelenchoides besseyi, Hirschmanniella spp., Heterodera oryzicola and Meloidogyne graminicola. However, rice root-knot nematode (M. graminicola) happens to be the most important pest and is prevalent in major rice producing countries of the world. In India, the distribution of M. graminicola in rice growing areas of different states has been documented in nematode distribution atlas prepared by All India Coordinated Research Project (Nematodes) and published by Directorate of Information and Publications of Agriculture, Indian Council of Agricultural Research, New Delhi, India during 2010. M. graminicola affected rice plants show stunting and chlorosis due to the characteristic terminal swellings/galls on the roots which ultimately result in severe reduction in growth and yield. Number of eco-friendly management technologies against M. graminicola have been developed and demonstrated, including the use of bioagents for minimising the losses due to rice root-knot nematode. This review is focused on collating information to understand the current scenario of rice root-knot nematodes with greater emphasis on its ecological requirements, damage symptoms, biology, morphology, host range and management strategies.     

Pathogenicity of the rice root nematode,Hirschmanniella oryzae to rice plants in relation to nematode reproduction,plant growth,grain yield and biochemical changes

Influence of different inoculum levels of 0, 10, 100, 1000 and 10,000 individuals of Hirschmanniella oryzae on nematode reproduction and plant growth of rice cv. Giza171 and biochemical changes of infected plants was studied under screen-house conditions. Rate of nematode build up (P_f/P_i) was negatively correlated with the progressive increase in nematode inoculum levels. The percentage reduction in growth parameters, rice grain yield and the amount of total and reducing sugars were markedly affected showing a negative correlation with the tested inocula. The conspicuous reductions of plant growth, yield and total and reducing sugar contents were obtained by using 1000 and 10,000 nematodes per pot. The inoculum level of 1000 nematodes per pot was identified as critical population at which control programme must be started.     

Seasonal dynamics of phytonematodes associated with date palm cvs. Barhi and Hyani as affected by soil temperature and moisture

Seasonal fluctuation of the reniform nematode, Rotylenchulus reniformis in soil and roots and the spiral nematode, Helicotylenchus sp. in soil and roots of date palm (Phoenix dactylifera L.) cvs. Barhi and Hyani over one year revealed that these nematodes were negatively correlated with the prevailing soil temperature (°C) and were positively correlated with percentage soil moisture at different sampling months and seasons. Correlation coefficients(r) were calculated to ascertain these relationships.     

Effect of soil temperature on nitrogen fixation on roots of rice and reed

Summary The relation of nitrogenase activity (ethylene evolution) to soil temperature or incubation temperature of roots was determined on two genera of swamp plants, namely rice (Oryza sativa) cultivated in tropical climate and reed (Phragmites communis) grown in temperate regions. For both intact rice plants and excised rice roots the optimum temperature was 35°C. On excised roots nitrogenase activity responded more sensitivity to changes in temperature. In contrast to intact rice plants no ethylene evolution occurred on excised roots at 17 and 44°C. On reed roots temperature optimum was between 26 and 30°C which is clearly lower than on rice (35°C). The temperature range in which nitrogen fixation occurred was, however, similar to that of rice, although on a lower level. The results suggest a higher potential of the tropics for associative N₂ fixation, while in cooler climates the lower temperatures appear to be a major limiting factor.     

基于根际与凋落物际评价转Bt水稻对土壤线虫群落的影响

转基因作物在商业化推广前,有必要评价其对非靶标土壤生物的生态影响。根系和凋落物与土壤的界面是代表植物直接影响土壤的两个典型活性微域,即根际和凋落物际。基于室内盆栽实验构建水稻根际和凋落物际,比较了这两个高活性微域中转Bt水稻克螟稻(KMD)与亲本水稻秀水11(XSD)对土壤可利用资源、微生物学性质和线虫群落的影响。结果表明:转Bt水稻对土壤性质的影响依赖于水稻生育期和微域的变化。与XSD相比,KMD在苗期和拔节期显著提高了凋落物际土壤可溶性有机氮含量(P0.05);在苗期显著降低了凋落物际土壤铵态氮含量,但在成熟期显著提高了凋落物际与交互微域土壤的铵态氮含量(P0.05)。与亲本水稻相比,转Bt水稻分别在苗期和成熟期显著提高了凋落物际土壤微生物生物量碳和活性,而在拔节期和成熟期显著降低了根际土壤微生物生物量氮含量(P0.05)。微域间的交互作用显著影响土壤微生物生物量、可溶性有机碳和氮、线虫总数和各食性线虫的数量(P0.05)。转Bt水稻总体上降低了土壤线虫总数,尤其在苗期和拔节期的凋落物际土壤中达到显著水平。重复测量方差分析表明转Bt水稻显著影响土壤食细菌(P0.01)和食真菌(P0.05)线虫数量,及线虫群落的通道指数和富集指数。水稻收获后KMD秸秆的Bt蛋白含量显著高于亲本,全部KMD处理的土壤样品中Bt蛋白含量无显著变化,因而转Bt水稻对土壤生物学性质的影响可能并非来源于Bt蛋白的作用,而更可能来自于水稻生长性状和凋落物性质的差异。     

Effect of different level of inoculums of root knot nematode on predacity of Arthrobotrys oligospora

Arthrobotrys oligospora is one of the most important predaceous fungi occurring widely in different types of soil. This fungus produces the hyphal bails and network compound. This hyphal nets as trapping structure which may be one dimensional to two or three dimensional and are formed through repeated hyphal anastomosis, which capture nematodes either through the adhesive material present on the surface of hyphal nets or due to physical entanglement. When moving nematodes pass through such hyphal bails, they are captured by sticky substances present on the bails. Such nematodes struggle violently to escape the capture but they are usually entangled at several places of their body. They absorb the nutrients and finally kill the nematodes. Irrespective of the different levels of inoculums of root knot nematode, capturing of nematodes increased with increasing period of incubation. After 5 days of inoculation, 93–97.33% nematodes were captured irrespective of the nematode number.     

The Impacts of Above- and Belowground Plant Input on Soil Microbiota: Invasive <Emphasis Type="Italic">Spartina alterniflora</Emphasis> Versus Native <Emphasis Type="Italic">Phragmites australis</Emphasis>

Invasive plants affect soil food webs through various resource inputs including shoot litter, root litter and living root input. The net impact of invasive plants on soil biota has been recognized; however, the relative contributions of different resource input pathways have not been quantified. Through a 2 × 2 × 2 factorial field experiment, a pair of invasive and native plant species (Spartina alterniflora vs. Phragmites australis) was compared to determine the relative impacts of their living roots or shoots and root litter on soil microbial and nematode communities. Living root identity affected bacteria-to-fungi PLFA ratios, abundance of total nematodes, plant-feeding nematodes and omnivorous nematodes. Specifically, the plant-feeding nematodes were 627% less abundant when living roots of invasive S. alterniflora were present than those of native P. australis. Likewise, shoot and root biomass (within soil at 0–10 cm depth) of S. alterniflora was, respectively, 300 and 100% greater than those of P. australis. These findings support the enemy release hypothesis of plant invasion. Root litter identity affected other components of soil microbiota (that is, bacterial-feeding nematodes), which were 34% more abundant in the presence of root litter of P. australis than S. alterniflora. Overall, more variation associated with nematode community structure and function was explained by differences in living roots than root or shoot litter for this pair of plant species sharing a common habitat but contrasting invasion degrees. We conclude that belowground resource input is an important mechanism used by invasive plants to affect ecosystem structure and function.     

Evaluation of Pochonia chlamydosporia var. chlamydosporia as a control agent of Meloidogyne javanica on pistachio

The potential of isolates of Pochonia chlamydosporia var. chlamydosporia as biocontrol agents for root-knot nematodes was investigated in vitro and on pistachio plants. On potato dextrose agar, growth of all isolates started at temperatures above 10°C, reached maximum between 25 and 28°C and slowed down at 33°C. On water agar, all isolates parasitized more than 85% of the eggs of Meloidogyne javanica at 18°C after 3 weeks. Filtrates of isolates grown on malt extract broth did not cause more than 5% mortality on second-stage juveniles of M. javanica after 48 h of incubation. A single application of 10×10³ chlamydospores (produced on sand–barley medium) g^–1 soil, was applied to unsterilised soil planted with pistachio cv. Kalehghochi, and plants were inoculated with 3000 nematode eggs. After 120 days in the glasshouse, nematode multiplication and damage were measured. Ability of fungus isolates to survive in the soil and to grow on roots were estimated by counting colony forming units (cfu) on semi-selective medium. Fungal abundance in soil increased nearly 3-fold and 10×10³ and 20×10³ cfu g^–1 root of pistachio were estimated in pots treated with isolates 40 and 50, respectively. Strain 50 was more abundant in soil and on the roots, infected more eggs (40%) on the roots and controlled 56% of total population of M. javanica on pistachio roots, whereas isolate 40 parasitized 15% of the eggs on the roots and controlled ca. 36% of the final nematode population.     

Nematodes (Longidorus sp. andTylenchorhynchus microphasmis loof) in growth and nodulation of sea buckthorn (Hippophaë rhamnoides L.)

Summary Hippophaë rhamnoides seedlings were grown in sterilized and unsterilized soil from a decliningH. rhamnoides scrub, to which different numbers ofLongidorus sp. andTylenchorhynchus microphasmis were added. In sterilized and unsterilized soil, retardation of growth, content of dry matter in the shoots, and incidence of deformed short lateral roots of test plants were positively correlated with counts of both nematode species. Nitrogen content in the shoots, nodulation on the roots of test plants and increase increase in nematodes were negatively correlated with the initial number of both nematode species in sterilized soil. In unsterilized soil, an unknown biotic factor was present that reduces growth ofH. rhamnoides, nodulation and multiplication of the nematodes. This factor seems to interact with the nematodes in reducing growth ofH. rhamnoides.Deceased.     

Susceptibility of Spodoptera littoralis caterpillars to entomopathogenic nematode Steinernema feltiae after consumption of non-specific transgenic plants

Spodoptera littoralis caterpillars were transferred from an artificial diet to potato leaves at the start of the third or fifth instar and exposed to the infective juveniles of the nematode Steinernema feltiae since the beginning of the sixth instar until the start of pupation. Leaves were taken from the control potatoes or from genetically modified potatoes expressing either Cry3Aa toxin of Bacillus thuringiensis (Bt) or Galanthus nivalis agglutinin (GNA) which are mainly non-specific to S. littoralis larvae. The nematodes killed all the caterpillars within seven days compared with the starved larvae in the same period of exposure. The average time to death and the number of nematodes successfully invaded the larvae were affected by the period of feeding on potato leaves. In the non-starved caterpillars, which received potato leaves throughout the whole period of exposure to the nematodes, the type of potato leaves had no effect on the number of nematodes inside cadavers (p = 0.352 and F = 1.070) and also on the effect on the length of survival after exposure to the nematodes (p = 0.7892 and F = 0.596). No hazardous effect on the development and survival of entomopathogenic nematode S. feltiae which successfully invaded larvae fed on modified potato (Bt or GNA) was reported.     

Evaluation of Blattisocius dolichus (Acari: Blattisociidae) for biocontrol of root-knot nematode,Meloidogyne incognita (Tylenchida: Heteroderidae)

The root-knot nematode, Meloidogyne incognita Kofoid and White (Tylenchida: Heteroderidae), is one of the most important plant parasitic nematodes attacking many plant roots. In this paper, the predation and biocontrol efficiency of Blattisocius dolichus Ma (Acari: Blattisociidae) on this nematode were studied. The predation rate and the environmental factors affecting predation rate of B. dolichus on second-stage juveniles of M. incognita (Mi-J2) were studied in experimental arenas in plastic dishes. Both female and male mites had greater capability in consuming Mi-J2, and daily predation rate of female and male mites was not less than 35 and 29.6 nematodes within seven days, respectively. Temperature, nematode density and starvation affected B. dolichus predating on Mi-J2, and when offered 300 nematodes per dish, the predation rate of mites starved for 96 h was the highest at 25 °C, with female and male mites consumed 50.5 and 54 nematodes in 24 h, respectively. The biocontrol of B. dolichus against M. incognita was carried out on potted water spinach Ipomoea aquatic in a greenhouse. The water spinach roots were inoculated with 1,000 Mi-J2 ten days after releasing 100, 200, 300, 400 and 500 mites per pot. Compared to the nematodes–alone control, the number of root-knots of all mite treatments and the number of egg masses of the treatments with 300, 400 and 500 mites significantly decreased. Effect of releasing 500 mites on control of the root nematode M. incognita was best among all mite treatments, reduced the root-knots and egg masses 37.1 and 55.1 %, respectively, but no significant difference was observed compared to 400 mites treatment.     

Endoroot bacteria derived from marigolds (Tagetes spp.) can decrease soil population densities of root-lesion nematodes in the potato root zone

Single isolates of bacterial endophytes, isolated from the nematode antagonistic plant species African (Tagetes erecta L.) and French (T. patula L.) marigold, were introduced into potatoes (Solanum tuberosum L.). Several bacterial species possessed activity against root-lesion nematodes (Pratylenchus penetrans) in soils around the root zone of potatoes, namely: Microbacterium esteraromaticum, Tsukamurella paurometabolum, isolate TP6, Pseudomonas chlororaphis, Kocuria varians and K. kristinae. Of these, M. esteraromaticum and K. varians depressed the population densities of root-lesion nematodes without incurring any yield penalty (tuber wet weight). No significant differences were found in the total numbers of P. penetrans nematodes, rhabditid nematodes or `other' parasitic nematode species within the root tissues of bacterized potato plants compared to the unbacterized check. Overall, tuber fresh weights and tuber number were equal to or significantly lower (P\le0.05) in bacterized plants than their unbacterized counterpart. We conclude that endoroot bacteria from Tagetes spp. can play a role in nematode suppression through the attenuation of nematode proliferation. We propose that these nematode control properties are capable of transfer to other crops in a rotation as a beneficial `residual' microflora – a form of beneficial microbial allelopathy.     

Nematode–citrus plant interactions: host preference,damage rate and molecular characterization of Citrus root nematode Tylenchulus semipenetrans

• Citrus plants are host to several plant parasitic nematodes (PPNs), which are microscopic organisms. Among PPNs, the citrus root nematode, T. semipenetrans (Cobb 1913) (Tylenchida: Tylenchulidae), causes significant damage to citrus plantations worldwide. Understanding citrus nematode populations, precise identification, host preference among citrus species, and damage threshold are crucial to control T. semipenetrans. The minutiae of citrus plant–nematode interactions, nematode density and molecular nematode identification are not well understood. In this study, nematode species and density in citrus orchards, host specialization, molecular and morphological characteristics of nematodes were assessed.
• Molecular and morphological methods, host–nematode interactions, host (citrus species) preference, damage economic threshold (ET), and economic injury level (EIL) were determined using laboratory methods and field sampling. Citrus plantations in different provinces in the Mediterranean region of Turkey were investigated.
• Nematode species were identified molecularly and morphologically. ITS sequences revealed that samples were infected by citrus root nematode T. semipenetrans. The lowest nematode density was in C. reticulata in Mersin (53 2nd stage juveniles (J2s) 100 g⁻¹ soil), while the highest density was from Hatay in C. sinensis (12173 J2s 100 g⁻¹ soil). Highest citrus nematode population density was on roots of C. reticulata, followed by C. sinensis, C. limon, and C. paradisi.
• The citrus nematode is more common than was thought and population fluctuations change according to specific citrus species. Environmental conditions, host and ecological factors, such as temperature, soil pH, and soil nutrients, might influence nematode populations in citrus orchards. Investigating nematode density in diverse soil ecologies and the responses of different resistant/tolerant citrus species and cultivars to nematode populations is essential in future studies.

     

氮沉降对土壤线虫群落影响的研究进展

综述了主要陆地生态系统(草原、农田和森林)土壤线虫群落对氮沉降增加的响应格局和机制。总体上,氮沉降增加对线虫数量一般无显著影响,但增加了土壤中富集机会主义者(即低营养级的r-策略者)数量,降低了线虫群落成熟度指数(MI),表明氮沉降增加可能会使土壤食物网简化。氮沉降增加主要通过改变土壤微环境(如增加含氮离子浓度、降低土壤pH)直接影响土壤线虫群落,或者改变植物地上地下资源的输入和线虫与其他土壤动物的关系,间接影响线虫群落。最后,根据目前研究现状,指出了当前研究存在的局限性,包括研究时间和空间尺度上以及研究技术手段上的局限。建议综合多个全球环境变化因子,并结合室内试验及分子手段的方法对土壤线虫群落进行研究。     

Effect of Tillage and Water Management on the Population Behaviour of Root-Knot Nematodes Meloidogyne Triticoryzae in Rice Crop

The effects of puddling and water regimes on hydraulic conductivity (cm/day) of soil and on bulk density (mg/m 3 ) during rice culture, soil physical characteristics of the experimental field population densities of plant-parasitic nematodes have been studied. Puddling reduced the bulk density of soil and decreased the hydraulic conductivity in the upper layers but not in the deeper layers of soil aeration was reduced due to high moisture levels retained in the puddled soil. Population density of M. triticoryzae declined in puddled soil. The invasion of the roots by the second-generation infective juveniles was reduced. The population density of the root-knot nematodes was higher in the non-puddled soil especially in unsubmerged condition compared to puddled and submerged soil. However, if the seedlings were already infected before transplanting and submergence, the nematode could survive well and reproduce within the aerenchyma of the root.