Microsatellite DNA variation in Atlantic sturgeon (Acipenser oxyrinchus oxyrinchus) and cross-species amplification in the Acipenseridae

Overharvest and habitat alteration have led toa collapse of most commercial Atlantic sturgeon(Acipenser oxyrinchus oxyrinchus)fisheries while pushing the species to rarityor extirpation in most of its historical range. A biologically sound conservation program forthis species requires knowledge of its geneticdiversity and of the evolutionary relationshipsamong geographic populations. To address theseresearch needs, six microsatellite loci wereisolated from A. o. oxyrinchus. Pedigreeanalysis suggested that all are inherited in acodominant Mendelian pattern. The six lociwere tested in ten additional sturgeon speciesfrom three genera and three apparent ploidylevels (4n, 8n, 16n). Approximately 70% ofsuccessful locus-species amplifications werepolymorphic. Polysomy was observed most oftenin 8n and 16n species. Genetic diversity andpopulation structure of A. o. oxyrinchuswere assayed using three polymorphic Aoxmarkers and four markers developed from lakesturgeon (A. fulvescens). A. o.oxyrinchus were sampled from the AltamahaRiver, Georgia, USA north to the St. LawrenceRiver, Quebec, Canada. Gulf sturgeon, A.o. desotoi, were sampled from the SuwanneeRiver, Florida, USA, to assess differentiationbetween the subspecies. Seventy-seven alleleswere observed to segregate into uniquemultilocus genotypes for each of the 392individuals assayed. Mean diversity wasgreatest in the Chesapeake Bay (9.7 alleles perlocus) and Delaware River (7.4 alleles perlocus) collections, and lowest in the St.Lawrence River (4.6 alleles per locus). Meanheterozygosity across seven loci ranged from44.3% (St. Lawrence River) to 62.6% (Altamaha River). Significant allelic heterogeneity wasobserved in 82% of pairwise comparisons aswell as a global test (p < 0.0001) for A.o. oxyrinchus collections. Genetic distancesuggests the presence of at least sixsubpopulations in A. o. oxyrinchus: St.Lawrence River, St. John River, Hudson River,Delaware River, Albemarle Sound, and AltamahaRiver. Genetic and geographic distances werepositively correlated (r = 0.57, p < 0.03) amongA. o. oxyrinchus, suggesting isolation bydistance and philopatry. Hierarchical genediversity analysis indicated significantgenetic population structure at every level. Maximum likelihood assignment tests correctlyassigned individual fish to collection with ahigh rate of success (mean = 87.5%); this andother lines of evidence indicated that theChesapeake Bay collection represents a mixedpopulation of sub-adult sturgeon from northernand southern Atlantic coast populations. Population structure was correlated with thatsuggested by earlier mitochondrial (mt) DNAanalyses. Significant diversity was observedbetween two Canadian populations from whichonly a single mtDNA haplotype has beenreported.     

Changes in age composition and growth characteristics of Atlantic sturgeon (Acipenser oxyrinchus oxyrinchus) over 400 years

Populations of sturgeon (Acipenseridae) have experienced global declines, and in some cases extirpation, during the past century. In the current era of climate change and over-harvesting of fishery resources, climate models, based on uncertain boundary conditions, are being used to predict future effects on the Earth''s biota. A collection of approximately 400-year-old Atlantic sturgeon spines from a midden in colonial Jamestown, VA, USA, allowed us to compare the age structure and growth rate for a pre-industrial population during a ‘mini-ice age’ with samples collected from the modern population in the same reach of the James River. Compared with modern fish, the colonial population was characterized by larger and older individuals and exhibited significantly slower growth rates, which were comparable with modern populations at higher latitudes of North America. These results may relate to higher population densities and/or colder water temperatures during colonial times.     

Stock composition of Atlantic sturgeon (Acipenser oxyrinchus oxyrinchus) encountered in marine and estuarine environments on the U.S. Atlantic Coast

Atlantic sturgeon (Acipenser oxyrinchus oxyrinchus) is a large, anadromous fish native to the Atlantic Coast of North America. Although this species once supported important fisheries, centuries of exploitation and habitat degradation have resulted in dramatic declines, presumed extirpation in some rivers, and ultimately listing under the U.S. Endangered Species Act (ESA). Under the ESA, Atlantic sturgeon are listed as five separate Distinct Population Segments (DPSs), which form the basis for federal management. Despite state and federal protections Atlantic sturgeon still face significant threats to their recovery, including fisheries bycatch mortality, marine construction, dredging, dams, and vessel strikes. However, because subadult and adult Atlantic sturgeon migrate extensively across estuarine and marine environments and frequently form mixed-stock aggregations in non-natal habitats, it can be difficult to determine how these threats impact specific populations and DPSs. To better understand ontogenetic shifts in habitat use and stock-specific exposure to anthropogenic threats, we performed a mixed-stock analysis of 1704 Atlantic sturgeon encountered across the U.S. Atlantic Coast. Collections made north of Cape Cod, MA and south of Cape Hatteras, NC were dominated by individuals from regional stocks; however, we found extensive stock mixing in the mid-Atlantic region, particularly in coastal environments where individuals from all five DPSs were commonly observed. Subadults and adults that were encountered in offshore environments had moved, on average, 277 km from their natal source; however, 23% were sampled over 500 km from their natal river suggesting long-distance movements are relatively common in these age classes. Overall, our work highlights that Atlantic sturgeon populations are vulnerable to threats over vast areas and emphasizes the need for continued genetic monitoring to track recovery progress.

     

Status and management of Atlantic sturgeon, Acipenser oxyrinchus, in North America

The Atlantic sturgeon, Acipenser oxyrinchus, consists of two subspecies distributed along the Atlantic coast of North America from Labrador to the east coast of Florida (Atlantic sturgeon subspecies – A. o. oxyrinchus) and along the Gulf of Mexico from Florida Bay, Florida to the mouth of the Mississippi River (Gulf sturgeon subspecies – A. o. desotoi). The species has been exploited throughout its range with landings peaking around the turn of the 20th century followed by drastic declines shortly thereafter. During recent years, landings in Canadian waters have increased substantially (approximately 129 metric tons in 1993) while in the United States landings are more controlled or prohibited (approximately 22–24 metric tons in 1993). Recently, the Atlantic States Marine Fisheries Commission developed a Fishery management plan for Atlantic sturgeon, and the United States Fish & Wildlife Service and Gulf States Marine Fisheries Commission drafted a Gulf Sturgeon Recovery/Management Plan. Fishery managers in Canada are in the process of establishing more stringent fishery regulations for sturgeon. Thus, the impact on populations due to harvesting should be substantially reduced. Current research focus includes: life history and population status studies, stock delineation, and development of culture and stock enhancement techniques. Implementation of the findings of such studies may be helpful in the restoration of depleted stocks.     

Structure and management of an exploited population of Atlantic sturgeon (Acipenser oxyrinchus) in the St. Lawrence Estuary, Québec, Canada

The Atlantic sturgeon ( Acipenser oxyrinchus ) has been exploited commercially in the upper estuary of the SL Lawrence River right up until the present day. Statistics on annual landings from 20 to 401 between 1940 and 1966, and an almost total absence between 1967 and 1975, were followed by a significant capture increase, which reached 120 t in 1993.
Analysis of captures has shown that the median age of sturgeon caught has gone down from 11 to 6 years-old in recent years, that the length of the fish (LF) varied between 50 cm and 170 cm, and that the last significant cohorts supporting the fishery come from 1982, 1986 and 1988. In 1994, 2% to 4% of captures were larger than 150 cm. No fish in reproductive state, even among the largest individuals, was observed among the captures.
Since 1995, we have adopted various regulations in order to protect the largest sturgeons, and to reduce the annual landings to 60 t in 1998. Monitoring of captures, conducted in collaboration with commercial fishermen, has enabled us to measure the effects of these new fishing regulations, which include fishing effort control, reduction of the season, size limits for captures, and imposition of a quota. These measures have allowed us to partially reach our objective, since landings in 1997 were reduced to 661.
The absence of sexually mature adults in captures has always raised the question as to their abundance and the areas which they use. Current studies are demonstrating that the sexually mature adults use the deepest parts of the estuary, sectors which are not exploited in a sustained way by fishermen. Studies are in progress to locate spawning grounds and early juvenile habitat. Exploitation of this population will continue to be closely monitored.     

Conservation of Atlantic sturgeon <Emphasis Type=Italic>Acipenser oxyrinchus oxyrinchus</Emphasis>: delineation of stock structure and distinct population segments

The anadromous Atlantic sturgeon Acipenser oxyrinchus oxyrinchus, a wide-ranging species along the Atlantic Coast of North America, is being considered for federal listing under the U.S. Endangered Species Act. Identification of distinct population segments (DPS) is necessary but problematic for highly vagile species such as Atlantic sturgeon which may spend a high proportion of their lives outside of their natal estuaries. Characterization of genetic differentiation and estimates of gene flow provide a quantitative measure of the number of DPS into which species could be divided over their distribution and the reproductive independence of each unit. We sequenced a portion of the mitochondrial DNA control region to characterize population structure and gene flow across all naturally reproducing populations from which specimens could be obtained. We then considered these genetic data along with ancillary information on life history characteristics, historical fisheries data, and trajectories of abundance to determine the number of DPS into which this species should be divided. Our results suggest that philopatry is high for Atlantic sturgeon and that each U.S. estuary analyzed hosts genetically distinct populations of Atlantic sturgeon. We conclude that at least nine DPS of Atlantic sturgeon exist along the Atlantic Coast of the U.S. In contrast, the Atlantic Sturgeon Status Review Team has proposed a five DPS scheme for this subspecies based largely on results from nuclear DNA microsatellites, but with fewer populations represented and lower samples sizes. These different conclusions illustrate the somewhat arbitrary nature of the DPS concept, at least as applied to Atlantic sturgeon.     

Evidence of autumn spawning in Suwannee River Gulf sturgeon,Acipenser oxyrinchus desotoi (Vladykov, 1955)

Evidence of autumn spawning of Gulf sturgeon Acipenser oxyrinchus desotoi in the Suwannee River, Florida, was compiled from multiple investigations between 1986 and 2008. Gulf sturgeon are known from egg collections to spawn in the springtime months following immigration into rivers. Evidence of autumn spawning includes multiple captures of sturgeon in September through early November that were ripe (late‐development ova; motile sperm) or exhibited just‐spawned characteristics, telemetry of fish that made >175 river kilometer upstream excursions to the spawning grounds in September–October, and the capture of a 9.3 cm TL age‐0 Gulf sturgeon on 29 November 2000 (which would have been spawned in late September 2000). Analysis of age‐at‐length data indicates that ca. 20% of the Suwannee River Gulf sturgeon population may be attributable to autumn spawning. However, with the very low sampling effort expended, eggs or early life stages have not yet been captured in the autumn, which would be the conclusive proof of autumn spawning. More sampling, and sampling at previously unknown sites frequented by acoustic telemetry fish, would be required to find eggs.     

Characterization of Sox9 in European Atlantic sturgeon (Acipenser sturio)

The Sox9 gene of Acipenser sturio, one of the most primitive vertebrates, was analyzed. No sex-specific differences were observed. Sturgeon Sox9 consists of three exons and two introns with completely conserved exon-intron boundaries showing high levels of homology to other vertebrate Sox9 sequences, especially in the N-terminus region containing the HMG box. We found strong evidence for negative (purifying) selection. In contrast to previous studies of other fishes, we observed no evidence for gene duplication in sturgeon. Phylogenetic analyses of Sox9 evolution revealed a basal position for sturgeon Sox9.     

Genetic characterization of Atlantic sturgeon, <Emphasis Type="Italic">Acipenser oxyrinchus oxyrinchus</Emphasis>, in the Edisto River,South Carolina and identification of genetically discrete fall and spring spawning

Once widely abundant, most subpopulations of the endangered Atlantic sturgeon are now estimated to be only 1–10% of their historical levels. The Edisto River has been sampled for a long period and extensively for juvenile Atlantic sturgeon from separate spring- and fall-spawned cohorts. Our objectives are to characterize the genetic diversity, stability, adaptive potential, and potential genetic structure of Atlantic sturgeon in the Edisto River and to identify any past bottlenecks experienced by this species, as well as to conduct forward simulation modeling of the population under multiple population trajectories. Our results indicate that fall- and spring-spawned Atlantic sturgeon in the Edisto River are genetically distinct (overall \({{F}_{ST}}\)?=?0.092) with little gene flow or admixture between groups, both of which are diverse from a neutral genetic marker standpoint. Genetic diversity of both groups is on the higher end of published population diversity values. A lack of inbreeding and recent bottlenecks also bode well for these two groups of sturgeon, although future projections indicate a loss of allelic richness and genetic diversity even with population stability. Our effective population size estimates are moderate compared to published estimates for other Atlantic sturgeon populations. The most significant finding of our research is the genetic distinctness of the fall- and spring-spawned Atlantic sturgeon in the Edisto River, which may have several important ramifications for management of the species, including re-evaluating the demarcation of distinct population segments.     

Post-release survival and riverine movements of Gulf of Mexico sturgeon (Acipenser oxyrinchus desotoi Acipenseriformes) following induced spawning

Post‐release survival and upstream movement of Gulf of Mexico sturgeon (Acipenser oxyrinchus desotoi) in the Suwannee River, Florida, were examined following induced spawning using carp pituitary extract (CPE). Six mature females (one CPE‐treated and five control) and 12 mature males (five CPE‐treated and seven control) were implanted with ultrasonic tags in March 2001 during their ingress into the Suwannee River. All CPE‐treated sturgeon and 10 of the 12 control fish were relocated using ultrasonic telemetry during 4 months following their release, resulting in 100% survival of treated fish and 83% known survival of control fish. Two control fish (one female and one male) could not be relocated after 2 weeks post‐release. CPE treatment did not result in mortality but did affect upstream movement behavior, with CPE‐treated males moving upstream at a significantly slower rate than control males and females. Similarly, the maximum observed distance that the fish moved upstream differed among control fish (males and females) and treated males, with control fish moving further upstream than CPE‐treated males. The rate of upstream movement for the single CPE‐treated female was similar to the control females and the maximum upstream distance that this female was located was near a putative spawning area. In general, the environmental parameters of temperature, dissolved oxygen, and conductivity differed over the course of the study but did not differ between treatments and sexes. Treating sturgeon with CPE to induce spawning therefore did not cause mortality but did appear to slow the rate of upstream movement and maximum distance moved in male Gulf sturgeon.