Degradation and transformation of humic substances by saprotrophic fungi: processes and mechanisms

Humic substances represent the main carbon reservoir in the biosphere, estimated at 1600 × 10¹⁵ g C. Due to their crucial role in reductive and oxidative reactions, sorption, complexation and transport of pollutants, minerals and trace elements, sustaining plant growth, soil structure and formation, and control of the biogeochemistry of organic carbon in the global ecosystem, humic substances are extremely important to environmental processes. Saprotrophic fungi active in the decomposition process of humic substances include mainly ascomycetes and basidiomycetes, which are both common in the upper layers of soils. White rot and litter decomposing fungi are the most important organisms in the degradation and mineralization of refractory organic matter (OM), whereas ascomycetes are mainly involved in the modification and polymerization of humic substances. The mechanisms of degradation probably involve mainly a variety of non specific oxidizing enzymes. This review provides an overview of the subject, while bridging two main disciplines: soil OM chemistry and fungal microbiology. It is aimed to highlight problems, unsolved questions and hypotheses.     

Studies on inhibitory activities of antibodies against phytopathogenic fungi: an immunological approach

The major problem in agriculture is that of the fungal pathogens. In this era, where biological control is at focus, and is the centre of crop protection as well as environmental protection, the synthesis of new bio bodies is of utmost need. Fungicides available in the market, though of potential, are pathogen specific and highly pollutive. An attempt was made to raise polyclonal antibodies against Aspergillus niger. Following the particular standardised immunisation schedule, regular injections and periodic tapping were carried out. The IgG purified was used to check cross-reactivity with different crop fungi like Fusarium solani, Fusarium oxysporum f. sp. cicer (FOC), Rhizoctonia bataticola, Botryodiplodia theobromae, Curvularia sp., Alternaria porri and also with Aspergillus niger by two different methods. Liquid test media and the radial growth inhibition test performed in solid media were used to check the inhibition of fungi and cross-reactivity. The results were subjected to analysis of variance (ANOVA) by using Tukey's test at the significance level of p < 0.05. The antibodies were active against all the fungi for more than 15 days except for A. niger in which from the seventh day onwards spore germination was observed. The probable role of antibodies to detect the common antigenic molecule that may be present in all the tested fungi and their role in inhibiting these fungi is discussed.     

Biological control of phytopathogenic fungi through lytic action of Trichoderma species

Abstract The antagonistic effect of Trichoderma reesei and Trichoderma harzianum was studied towards a range of phytopathogenic fungi; Alternia solani, Botrytis fabae, Cladosporium cucumerinum, Fusarium oxysporum, Fusarium tricintum . Coculture of the phytopathogens and Trichodema under laboratory conditions clearly showed dominance of the Trichoderma species. In all cases, Trichoderma overgrew the phytopathogens and subsequently developed a conidial lawn over the surface. In these studies the lytic action of the pathogen was clearly apparent and the inhibition of growth appears directly related to its ability to hydrolyze the cell walls of the tested microorganisms rather than through the inhibitory action of antibiotics or toxins. Proteinase, mannanase, laminarinase and chitinase activities were determined in the extracellular fluid of Trichoderma . Glucose and laminaribiose were detected after the in vitro hydrolysis of the cell walls of the phytopathogens. The data imply that the nature of T. reesei and T. harzianum antagonism is based on mycoparasitism (lysis) and appears to optimalize with contact between the mycelia.     

Growth of saprotrophic fungi and bacteria in soil

Bacterial and fungal growth rate measurements are sensitive variables to detect changes in environmental conditions. However, while considerable progress has been made in methods to assess the species composition and biomass of fungi and bacteria, information about growth rates remains surprisingly rudimentary. We review the recent history of approaches to assess bacterial and fungal growth rates, leading up to current methods, especially focusing on leucine/thymidine incorporation to estimate bacterial growth and acetate incorporation into ergosterol to estimate fungal growth. We present the underlying assumptions for these methods, compare estimates of turnover times for fungi and bacteria based on them, and discuss issues, including for example elusive conversion factors. We review what the application of fungal and bacterial growth rate methods has revealed regarding the influence of the environmental factors of temperature, moisture (including drying/rewetting), pH, as well as the influence of substrate additions, the presence of plants and toxins. We highlight experiments exploring the competitive and facilitative interaction between bacteria and fungi enabled using growth rate methods. Finally, we predict that growth methods will be an important complement to molecular approaches to elucidate fungal and bacterial ecology, and we identify methodological concerns and how they should be addressed.     

植物病原真菌分泌蛋白质组学研究进展

分泌蛋白质组是指在特定时间和特定条件下,由组织或细胞等分泌的全部蛋白质。在病原真菌与植物的相互作用过程中,病原真菌会分泌大量的蛋白质和代谢产物,在病原真菌对植物的侵入、定殖和扩展等致病过程中起着重要作用。本文主要介绍了分泌蛋白质在植物病原真菌致病性中的作用、重要植物病原真菌分泌蛋白质组的研究进展、及植物病原真菌分泌蛋白质组的生物信息学预测分析等,对于全面了解植物病原真菌的致病机理具有重要意义。     

The effect of a preparation from Chaetomium fungi on the growth of phytopathogenic fungi

We studied the fungicidal activity of a biological preparation from the fungi of the genus Chaetomium against soil phytopathogenic fungi Rhizoctonia solani and Fusarium oxysporum. The inhibitory effect of the preparation under study depended on its concentration, duration of storage, and growth characteristics of pure cultures of the phytopathogens. The highest (98.8%) inhibitory activity was observed on the third day of the interaction with Rhizoctonia solani. After a 2-year storage, this preparation was capable of inhibiting the growth of phytopathogens only at high doses. The preparation precluded the development of a bare patch but increased the productivity of potato plants. The preparation may serve as an alternative to chemical fungicides for plant protection.     

The effect of tree-root exudates on the growth rate of ectomycorrhizal and saprotrophic fungi

Summary The object of this investigation was the promotion by root exudates of the growth rate of ectomycorrhizal fungi, discovered by Elias Melin in 1954. Eight ectomycorrhizal and ten non-mycorrhizal species were used as test fungi in the experiments. Different species often reacted differently: none of the eight isolated strains of Suillus luteus were promoted by pineroot exudate, whereas the growth rates of all seven strains of S. granulatus were increased. Among the other ectomycorrhizal species, S. variegatus, Laccaria bicolor, Pisolithus tinctorius and Thelephora terrestris, each represented by only one, two or three strains, usually reacted to the pine root exudate with an increased growth rate; S. bovinus and Paxillus involutus did not respond at all. Hitherto, studies of root-exudate effects on fungi have been based exclusively on the responses of ectomycorrhizal species; in the present study saprotrophic fungi were also used as test organisms. Seven out of ten saprotrophic species reacted with markedly accelerated growth when exposed to a pineroot exudate. Melin's assumption that a constituent of the root exudate, the M-factor, could replace the exudate growth-promoting activity was verified. By means of TLC fraction it was found that the fatty acid palmitic acid alone caused an increase in growth rate equal to that of the pine-root exudate. In line with previously published data by Gogala (1970), we also showed that certain cytokinins, especially isopentenylaminopurine, could act as substitutes for the total root exudate. Thus both palmitic acid and isopentenylaminopurine are able to function as M-factors equivalent to a root exudate.     

The effect of pH on the growth of saprotrophic and ectomycorrhizal ammonia fungi in vitro

Some saprotrophic and ectomycorrhizal fungi produce reproductive structures, preferably in slightly alkaline to neutral forest soil. This research examines the growth of these "ammonia fungi" in liquid medium at various pH values. In the first experiment, the capacity of six buffers was examined to select appropriate buffers for stabilizing pH in the neutral-to-alkaline range by culture of three species of the ammonia fungi in media initially adjusted to pH 7, 8 or 9. The highest buffering capacity was shown in 2-(N-morpholino) ethanesulfonic acid (MES) at pH 7, and N, N-bis (2-hydroxyethyl) glycine (Bicine) and N-2-hydroxyethylpiperazine-N'-2-ethanesulfonic acid (HEPES) at pH 8 and 9. In the second experiment, the growth of 15 strains of both saprotrophic and ectomycorrhizal ammonia fungi was tested on the medium initially adjusted to pH 3, 4, 5, 6 or 7 with MES, or to pH 8 or 9 buffered with Bicine. Many of the saprotrophic species grew well at pH 7 or 8; the ectomycorrhizal species showed optimum growth at pH 5 or 6. The pH suitable for the in vitro growth of these fungi was correlated with the pH of forest soil where these fungi occur.     

Isolation of alkaloid-like substances from penicillium fungi]

Alkaloid-like substances have been obtained from the cultivation of fungi Penicillium granulatum and Penicillin corylophillum. The procedure for their preparative isolation has been developed. They do not have physico-chemical characteristics typical of alkaloids viridicatine and cyclopenine, previously isolated from Penicillium fungi. The presence of nitrogen in the structure has been shown in the product synthesized by Penicillium granulatum. Ultraviolet, infrared, nuclear magnetic resonance and mass spectra have been recorded for the product.     

The potential saprotrophic capacity of foliar endophytic fungi from Quercus gambelii

Endophytic fungi occur in living tissues of terrestrial plants. Many of these fungi are primarily biotrophic, but the trophic range of endophytic fungi as a group may not be fully appreciated. In this study, our goals were (1) for the Class 3 foliar endophytic fungi isolated from Quercus gambelii, determine their potential saprotrophic capacity, which we define as the difference in growth rate in culture on Quercus gambelii leaf litter medium and control medium lacking leaf litter and (2) quantify sources of variation among isolates of these endophytic fungi in potential saprotrophic capacity, including variation due to microsite within host trees (leaves receiving full sun vs. shade) and variation within and among fungal genera. We found that 48 of the 49 tested endophytic fungal isolates have significant potential saprotrophic capacity. Contrary to expectation, the amount of solar radiation available to the leaf from which the fungi were isolated had no significant impact on potential saprotrophic capacity and there was more variability in potential saprotrophic capacity among isolates within a genus than among genera. Our results suggest that some Class 3 endophytic fungi may have the potential to function as saprotrophic fungi within plant litter, but this remains to be seen for these Quercus gambelii isolates under more natural circumstances.     

Evolutionary histories and mycorrhizal associations of mycoheterotrophic plants dependent on saprotrophic fungi

Mycoheterotrophic plants (MHPs) are leafless, achlorophyllous, and completely dependent on mycorrhizal fungi for their carbon supply. Mycorrhizal symbiosis is a mutualistic association with fungi that is undertaken by the majority of land plants, but mycoheterotrophy represents a breakdown of this mutualism in that plants parasitize fungi. Most MHPs are associated with fungi that are mycorrhizal with autotrophic plants, such as arbuscular mycorrhizal (AM) or ectomycorrhizal (ECM) fungi. Although these MHPs gain carbon via the common mycorrhizal network that links the surrounding autotrophic plants, some mycoheterotrophic lineages are associated with saprotrophic (SAP) fungi, which are free-living and decompose leaf litter and wood materials. Such MHPs are dependent on the forest carbon cycle, which involves the decomposition of wood debris and leaf litter, and have a unique biology and evolutionary history. MHPs associated with SAP fungi (SAP-MHPs) have to date been found only in the Orchidaceae and likely evolved independently at least nine times within that family. Phylogenetically divergent SAP Basidiomycota, mostly Agaricales but also Hymenochaetales, Polyporales, and others, are involved in mycoheterotrophy. The fungal specificity of SAP-MHPs varies from a highly specific association with a single fungal species to a broad range of interactions with multiple fungal orders. Establishment of symbiotic culture systems is indispensable for understanding the mechanisms underlying plant–fungus interactions and the conservation of MHPs. Symbiotic culture systems have been established for many SAP-MHP species as a pure culture of free-living SAP fungi is easier than that of biotrophic AM or ECM fungi. Culturable SAP-MHPs are useful research materials and will contribute to the advancement of plant science.

     

Excito-motor action of succinyldicholine and inhibitory action of acetylcholine on slow muscle, the frog hypoglossus]

We have registered contraction of the frog's hyoglossus which is essentially slow. By injecting succinyldicholin in the heart ventricle, we have elicited contractions which prove definitively the motor effect of this cholin ester on the slow muscular fibers. Acetylcholin, injected in the lymph vessels to avoid its effect on the heart, does not contract the hyoglossus. On the contrary, by exciting electrically the hypoglossus nerve, which commands the hyoglossus, we have observed that this mono-ester abolishes the neuro-muscular transmission, as in the curare intoxication. We have found the same phenomenon on the rat's semi-tendinosus which is a slow muscle too. The twitches produced by the ischiaticus are diminished significantly after the injection of acetylcholin in the jugular vein.     

Influence of autoclaved saprotrophic fungal mycelia on proteolytic activity in ectomycorrhizal fungi

The production of proteolytic enzymes by several strains of ectomycorrhizal fungi i.e., Amanita muscaria (16-3), Laccaria laccata (9-12), L. laccata (9-1), Suillus bovinus (15-4), Suillus bovinus (15-3), Suillus luteus (14-7) on mycelia of Trichoderma harzianum, Trichoderma virens and Mucor hiemalis and sodium caseinate, yeast extract was evaluated. The strains of A. muscaria (16-3) and L. laccata (9-12) were characterized by the highest activity of the acidic and neutral proteases. Taking the mycelia of saprotrophic fungi into consideration, the mycelium of M. hiemalis was the best inductor for proteolytic activity. The examined ectomycorrhizal fungi exhibited higher activity of acidic proteases than neutral ones on the mycelia of saprotrophic fungi, which may imply the participation of acidic proteases in nutrition.     

The effects of grazing history,soil properties and stand structure on the communities of saprotrophic fungi in wood-pastures

Wood-pastures are threatened anthropogenic biotopes that provide habitat for an extensive group of species. Here we studied the effect of management, grazing intensity, time since abandonment, historical land-use intensity, soil properties and stand conditions on communities of saprotrophic fungi in wood-pastures in Central Finland. We found that the proportion of broadleaved trees and soil pH are the major drivers in the communities of saprotrophic fungi in these boreal wood-pastures. In addition, tree species richness, soil moisture, historical land-use intensity and time since abandonment affected the communities of saprotrophic fungi. Current management or grazing intensity did not have a clear effect on saprotrophic fungal species richness, although dung-inhabiting fungal species richness was highest at intermediate to high grazing intensity. Obviously, there were many more dung-inhabiting fungal species on grazed than on abandoned sites. Our study highlights the conservation value of wood-pastures as hotspots of saprotrophic fungi.     

Effect of a preparation from Chaetomium fungi on the growth of phytopathogenic fungi

We studied the fungicidal activity of a biological preparation from the fungi of the genus Chaetomium against soil phytopathogenic fungi Rhizoctonia solani and Fusarium oxysporum. The inhibitory effect of the preparation under study depended on its concentration, duration of storage, and growth characteristics of pure cultures of the phytopathogens. The highest (98.8%) inhibitory activity was observed on day 3 of the interaction with Rhizoctonia solani. After a 2-year storage, this preparation was capable of inhibiting the growth of the phytopathogens only at high doses. The preparation precluded the development of bare patch and increased the productivity of potato plants. The preparation may serve as an alternative to chemical fungicides for plant protection.     

Boron and other elements in sporophores of ectomycorrhizal and saprotrophic fungi

Fungi are usually thought not to have a boron (B) requirement. It is not known if mycorrhizas take up B from low concentrations that are common in forest soils, as fungi might also immobilise B. Here, we studied the B concentrations in sporophores of 49 ectomycorrhizal and 10 saprotrophic fungi to assess whether B is translocated in mycelium or not. Additionally, P and metal concentrations were measured for comparison. Variability both within species and between species was very large, as the lowest measured B concentration was 0.01 mg kg⁻¹ in Amanita muscaria, and the highest was 280 mg kg⁻¹ in Paxillus involutus. There was no clear difference between saprotrophic and mycorrhizal fungi. The majority of species did not accumulate B at more than 0.01–3 mg kg⁻¹, but there were some species that consistently had median concentration values higher than 5–6 mg kg⁻¹ and much higher maximum values, particularly Paxillus involutus, Lactarius necator and several Russula species. Most species increased their B concentration in B fertilised plots, but there were exceptions, particularly Rozites caperatus and Lactarius camphoratus. Boron concentrations did not correlate with those of other elements. In conclusion, B is translocated in the mycelia of most of the studied species. The differences between species may be due to differences in their water use, or carbohydrates used in translocation. It remains to be studied, if B concentrations in mycorrhizas or mycelia in soil are in the same order of magnitude as the larger ones found here, and if this has any effects on the host plants.