Scabropezia, a new genus of Pezizaceae (Pezizales)

Scabropezia gen. nov., with globose spores, is described with two species, viz. the type species S. scabrosa (Cooke) comb, nov., and S. flavovirens (Fuck.) comb. nov. The relationship to the globose–spored genera Plicaria Fuck, emend. Boud. and Pachyphloeus Tul. and to the genus Peziza L. ex St.–Amans is discussed. A key for the treated taxa is provided.     

Parahellenia,a new genus segregated from Hellenia (Costaceae) based on phylogenetic and morphological evidence

Previous studies recognized three major lineages of the family Costaceae: a South American clade, an Asian clade and a Costus clade. However, the genus Hellenia within the Asian clade has been shown to be non-monophyletic and its morphology has not been studied carefully. Therefore, the complete plastid genomes of Hellenia species were obtained and the monophyly of Hellenia was tested through four different datasets in this study. Plastid phylogenomic analyses of Costaceae revealed that Hellenia is strongly supported as paraphyletic. Two major clades are recovered, namely the Hellenia s.s. subclade and the Parahellenia subclade. Phylogenetic analyses based on an enlarged taxon sampling of the Asian clade using a two chloroplast markers dataset (trnK intron and trnL-F spacer) confirmed the paraphyly of Hellenia. Meanwhile, morphological analyses suggested that members of the Parahellenia subclade differ from the remaining Hellenia species in many characters including inflorescences, bracts, stigma, axillary buds, floral tubes and labellum. According to the present molecular and morphological evidence, the latter subclade is recognized as a new genus, Parahellenia. Two new species are described, four new combinations are made, and identification keys are also provided.     

A new genus in the tribe Acidoxanthini (Diptera: Tephritidae: Trypetinae) from India,with a discussion of its phylogenetic relationships

Gibbifronta pavoniae David, Hancock and Han, gen. et sp. nov., is described from India. The current status of the subtribe Acidoxanthina is scrutinized based on both morphological characters and DNA barcoding analysis, and this taxon is formally proposed as the tribe Acidoxanthini within the subfamily Trypetinae in order to accommodate the genera Gibbifronta, Acidoxantha Hendel, Craspedoxanthitea Hardy and Acidoxanthopsis Hering. We found that the members of the Acidoxanthini possess a unique characteristic within the family Tephritidae, the short and broadly truncate lateral surstylus with reduced prensisetae and 1–3 pairs of strong dorsal setae on epandrium. Even though comparable information is not available for Acidoxanthopsis, it is retained in Acidoxanthini. Gibbifronta is distinguished from other genera of the tribe by the presence of a high gena and prominent hump-like projection on the frons. Phylogenetic analysis based on DNA barcodes revealed that Gibbifronta is closely related to Acidoxantha and support its placement in Acidoxanthini. COI sequences of Gibbifronta pavoniae, Nitrariomyia lukjanovitshi Rohdendorf, Acidoxantha galibeedu David and Ramani and an undescribed Acidoxantha species have been obtained and reported. A key to the genera of Acidoxanthini is also provided.http://zoobank.org/100D010D-21D3-4F0B-B38E-1F72DC8E9BF3.     

A new species of Anisopappus (Asteraceae, Inuleae) and its phylogenetic relationships within the genus

A new species of the genus Anisopappus (Asteraceae, Inuleae) from Angola, A. fruticosus , is described. The principal differences with respect to A. chinensis are discussed, and phylogenetic relationships with the other species of the genus are investigated by means of a cladistic analysis using morphological characters.     

Morphology and phylogenetic relationships of a new eschrichtiid genus (Cetacea: Mysticeti) from the Early Pliocene of northern Italy

A new eschrichtiid, Eschrichtioides gastaldii gen. nov., comb. nov. , is established based on a specimen previously assigned to Balaenoptera gastaldii Portis, 1885. The holotype is from the Early Pliocene of north-east Italy. It represents a fossil mysticete closely related to the living grey whale, Eschrichtius robustus . Comparative morphology and phylogenetic analysis support the monophyly of Eschrichtiidae and Cetotherium -like mysticetes and a sister group relationship between this clade and Balaenopteridae. Eschrichtiid fossils previously described are all from the Pleistocene and Late Pliocene while Eschrichtioides gastaldii is from the Early Pliocene. The recognition of this new eschrichtiid genus suggests that the Mediterranean trophic web of the Early Pliocene was more complex than at present and that the Neogene mysticete family-level biodiversity of the Mediterranean was higher than that currently observed in this basin.  © 2008 The Linnean Society of London, Zoological Journal of the Linnean Society , 2008, 153 , 161–186.     

On a new genus of freshwater hoplonemertean from Campbell Island

A new freshwater hoplonemertean from Campbell Island, to the south of New Zealand, i s described and named Campbellonemertes jolinsi gen. et sp. nov. The morphology of this tiemertean relates it with the family Prosorhochmidae and the occurrence of this form, the second freshwater prosorhochmid genus from the Antipodes, strongly supports an earlier hypothesis on the evolution of freshwater hoplonemerteans.     

Bryozoans are returning home: recolonization of freshwater ecosystems inferred from phylogenetic relationships

Bryozoans are aquatic invertebrates that inhabit all types of aquatic ecosystems. They are small animals that form large colonies by asexual budding. Colonies can reach the size of several tens of centimeters, while individual units within a colony are the size of a few millimeters. Each individual within a colony works as a separate zooid and is genetically identical to each other individual within the same colony. Most freshwater species of bryozoans belong to the Phylactolaemata class, while several species that tolerate brackish water belong to the Gymnolaemata class. Tissue samples for this study were collected in the rivers of Adriatic and Danube basin and in the wetland areas in the continental part of Croatia (Europe). Freshwater and brackish taxons of bryozoans were genetically analyzed for the purpose of creating phylogenetic relationships between freshwater and brackish taxons of the Phylactolaemata and Gymnolaemata classes and determining the role of brackish species in colonizing freshwater and marine ecosystems. Phylogenetic relationships inferred on the genes for 18S rRNA, 28S rRNA, COI, and ITS2 region confirmed Phylactolaemata bryozoans as radix bryozoan group. Phylogenetic analysis proved Phylactolaemata bryozoan's close relations with taxons from Phoronida phylum as well as the separation of the Lophopodidae family from other families within the Plumatellida genus. Comparative analysis of existing knowledge about the phylogeny of bryozoans and the expansion of known evolutionary hypotheses is proposed with the model of settlement of marine and freshwater ecosystems by the bryozoans group during their evolutionary past. In this case study, brackish bryozoan taxons represent a link for this ecological phylogenetic hypothesis. Comparison of brackish bryozoan species Lophopus crystallinus and Conopeum seurati confirmed a dual colonization of freshwater ecosystems throughout evolution of this group of animals.     

Descriptions and phylogenetic relationships of a new genus and two new species of Oligo‐Miocene cormorants (Aves: Phalacrocoracidae) from Australia

Tertiary cormorant fossils (Aves: Phalacrocoracidae) from Late Oligocene deposits in Australia are described. They derive from the Late Oligocene – Early Miocene (26–24 Mya) Etadunna and Namba Formations in the Lake Eyre and Lake Frome Basins, South Australia, respectively. A new genus, Nambashag gen. nov. , with two new species ( Nambashag billerooensis sp. nov. , 30 specimens; Nambashag microglaucus sp. nov. , 14 specimens), has been established. Phylogenetic analyses based on 113 morphological and two integumentary characters indicated that Nambashag is the sister taxon to the Early Miocene Nectornis miocaenus of Europe and all extant phalacrocoracids. As Nambashag, Nectornis, and extant phalacrocoracids constitute a strongly supported clade sister to Anhinga species, the fossil taxa have been referred to Phalacrocoracidae. Sulids and Fregata were successive sister taxa to the Phalacrocoracoidea, i.e. phalacrocoracids + Anhinga. As phalacrocoracids lived in both Europe and Australia during the Late Oligocene and no older phalacrocoracid taxa are known, the biogeographical origin of cormorants remains unanswered. The phylogenetic relationships of extant taxa were not wholly resolved, but contrary to previous morphological analyses, considerable concordance was found with relationships recovered by recent molecular analyses. Microcarbo is sister to all other extant phalacrocoracids, and all Leucocarbo species form a well‐supported clade. © 2011 The Linnean Society of London, Zoological Journal of the Linnean Society, 2011, 163 , 277–314.     

Evolutionary relationships of the cup-fungus genus Peziza and Pezizaceae inferred from multiple nuclear genes: RPB2, beta-tubulin, and LSU rDNA

To provide a robust phylogeny of Pezizaceae, partial sequences from two nuclear protein-coding genes, RPB2 (encoding the second largest subunit of RNA polymerase II) and beta-tubulin, were obtained from 69 and 72 specimens, respectively, to analyze with nuclear ribosomal large subunit RNA gene sequences (LSU). The three-gene data set includes 32 species of Peziza, and 27 species from nine additional epigeous and six hypogeous (truffle) pezizaceous genera. Analyses of the combined LSU, RPB2, and beta-tubulin data set using parsimony, maximum likelihood, and Bayesian approaches identify 14 fine-scale lineages within Pezizaceae. Species of Peziza occur in eight of the lineages, spread among other genera of the family, confirming the non-monophyly of the genus. Although parsimony analyses of the three-gene data set produced a nearly completely resolved strict consensus tree, with increased confidence, relationships between the lineages are still resolved with mostly weak bootstrap support. Bayesian analyses of the three-gene data, however, show support for several more inclusive clades, mostly congruent with Bayesian analyses of RPB2. No strongly supported incongruence was found among phylogenies derived from the separate LSU, RPB2, and beta-tubulin data sets. The RPB2 region appeared to be the most informative single gene region based on resolution and clade support, and accounts for the greatest number of potentially parsimony informative characters within the combined data set, followed by the LSU and the beta-tubulin region. The results indicate that third codon positions in beta-tubulin are saturated, especially for sites that provide information about the deeper relationships. Nevertheless, almost all phylogenetic signal in beta-tubulin is due to third positions changes, with almost no signal in first and second codons, and contribute phylogenetic information at the "fine-scale" level within the Pezizaceae. The Pezizaceae is supported as monophyletic in analyses of the three-gene data set, but its sister-group relationships is not resolved with support. The results advocate the use of RPB2 as a marker for ascomycete phylogenetics at the inter-generic level, whereas the beta-tubulin gene appears less useful.     

A new species of the genus Microbunodon (Anthracotheriidae, Artiodactyla) from the Miocene of Pakistan: genus revision, phylogenetic relationships and palaeobiogeography

Lihoreau, F., Blondel, C., Barry, J. & Brunet, M. (2004). A new species of the genus Microbunodon (Anthracotheriidae, Artiodactyla) from the Miocene of Pakistan: genus revision, phylogenetic relationships and palaeobiogeography. — Zoologica Scripta , 33 , 97–115.
New unpublished remains of small Anthracotheriinae are described. First, materials from the upper Oligocene (MP 30) locality of La Milloque, southwest France, permit a review of the species Microbunodon minimum . Thereafter, fossils from the middle and late Miocene of the Potwar Plateau, Pakistan are attributed to the European genus Microbunodon . Microbunodon milaensis sp. n. from the Nagri Formation (between 10.3 and 9.2 Ma), Pakistan, is described and the species M. silistrensis from the Lower Manchar Formation (between 16 and 15 Ma) and from the Chinji Formation (between 12.7 and 11.5 Ma), Pakistan, is reviewed. The new species represents the last occurrence of the subfamily Anthracotheriinae, around 9.3 Ma. Similar materials from the Bugti and Siwalik Hills were previously considered as a small Anthracotherium . Comparisons with M. minimum from the European late Oligocene lead to a complete revision of the genus and permit definition of a new set of characters, which separate Microbunodon from Anthracotherium . A cladistic analysis reconsiders phylogenetic relationships among Anthracotheriinae, separating an Anthracothema–Anthracotherium clade and an Anthracokeryx–Microbunodon clade. Microbunodon appears to stem from the Asian late Eocene–lower Oligocene genus Anthracokeryx . These results imply a new distribution of the genus Microbunodon showing exchanges between Europe and Asia during the late Oligocene and probably the lower Miocene.     

A new genus of freshwater hoplonemertean from New Zealand

Potamonemertes percivali , a new freshwater hoplonemertean from the Selwyn River, New Zealand, is described. It is more closely related to the antipodean prosorhochmid supralittoral and terrestrial genera Acteonemertes and Geonemertes than to the only other freshwater hoplonemertean genus Prostoma,* but possesses a distinctive combination of characters which establish it as a new genus and species.     

The genus Meira: phylogenetic placement and description of a new species

The genus Meira currently contains three recently described species of mite-associated basidiomycete yeasts from Israel and Japan and is placed in the Exobasidiomycetes (Ustilaginomycotina) Incertae sedis. A previously undescribed species of Meira was isolated from the phylloplane of a magnolia leaf in Louisiana, USA. Herein, we describe Meira miltonrushii sp. nov. and include phylogenetic analyses from three rDNA loci to resolve the placement of Meira. This study provides evidence that Meira belongs to the family Brachybasidiaceae in the Exobasidiales and supports the placement of another mite-associated yeast genus, Acaromyces, within Cryptobasidiaceae (Exobasidiales). We also examine sequences produced by numerous environmental studies that suggest Meira species can be found as endophytes of many plant species. To our knowledge, this is the first record of a member of the genus Meira in North America.     

Towards a phylogenetic classification of dendrocoelid freshwater planarians (Platyhelminthes): a morphological and eclectic approach

We explore and review the taxonomic distribution of morphological features that may be used as supporting apomorphies for the monophyletic status of various taxa in future, more comprehensive phylogenetic analyses of the dendrocoelid freshwater planarians and their close relatives. Characters examined are: (i) musculature of the pharynx; (ii) anatomy of the eye; (iii) distribution of testis follicles along the longitudinal axis of the body; (iv) epidermis of the body wall; (v) musculature of the ventral body wall; (vi) presence or absence of a penis papilla; (vii) position of the mouth opening; and (viii) anterior adhesive organ. A phylogenetic hypothesis, in the form of a character state tree, is developed. This hypothesis suggests that the Kenkiidae should be resurrected as a separate family, sharing a sistergroup relationship with the Dendrocoelidae. This sistergroup relationship is supported by the shared presence of an apomorphic anterior adhesive organ. Although the shape of the anterior adhesive organ, both within and between kenkiids and dendrocoelids, may differ considerably between species, they are all constructed according to the same principles. The monophyly of the Kenkiidae is supported by the presence of an apomorphic thickening of the marginal zone of the epidermis and presumably also by the presence of prepharyngeal testes. Within the Kenkiidae, the genus Macrocotyla should be considered as a junior synonym of Kenkia, which is characterized by the presence of an apomorphic ‘planariid pharynx‐type 2’. The monophyly of the Dendrocoelidae is suggested by the presence of a dendrocoelid type of pharynx. It is shown that multicellular eye cups with numerous photoreceptor cells are not restricted to the Dugesiidae and the Terricola but are also characteristic for the Dendrocoelidae; the phylogenetic implications of this character state distribution are discussed. It is pointed out that in planarians there may be a relationship between: (i) body size, the size of an eye cup and the number of its constituent pigment cells; and (ii) the size of an eye cup and the number of photoreceptor cells that it contains. Some tentative phylogenetic groups are suggested on the basis of the following presumed apomorphic characters: presence of transverse fibres in the ventral subepidermal musculature, presence of an extra longitudinal muscle layer in the outer pharynx musculature, a mouth opening that has shifted anteriad. It is suggested that the presumed monophyly of the genus Bdellocephala is supported by the apomorphic absence of a penis papilla, combined with a penial lumen provided with many plicae.     

Genome relationships in the genus Dasypyrum: evidence from molecular phylogenetic analysis and in situ hybridization

The genus Dasypyrum (or Haynaldia) consists of two species, D. villosum and D. breviaristatum. However, the genomic relationships between these two species remain unclear. The objective of this study was to provide molecular phylogenic and cytological evidence on the evolutionary relationships of the genus Dasypyrum. Sequences of Chloroplast DNA (cpDNA) and α-gliadin genes both support the hypothesis that diploid D. breviaristatum is the progenitor of tetraploid D. breviaristatum, and the diploid D. villosum and D. breviaristatum evolved parallel from an ancestral species. Genomic and fluorescence in situ hybridization using ribosomal DNA and rye repetitive DNA sequence as probes also indicated that tetraploid D. breviaristatum originated from diploid D. breviaristatum.     

Soil tardigrade biodiversity with the description of a new eutardigrade genus and its phylogenetic position

Sixteen tardigrade species have been identified from a total of 943 specimens isolated from 69 positive soil samples collected in southern Spain (Andalusia, Huelva). Three genera (Hexapodibius, Xerobiotus and the new genus Sarascon) and eight species are new records for the Iberian Peninsula, increasing Iberian tardigrade biodiversity by 6%, and 10 species are new records for soil habitats, increasing soil tardigrade biodiversity by 9% (from 96 to 108 species). A newly discovered species and genus are described, followed by an analysis and discussion of the species' phylogenetic position and synapomorphies, based on morphological and total evidence (morphology and molecular – 18S and 28S rRNA – data combined) phylogenetic analyses. The new genus is distinguished from other Itaquasconinae genera, to which it is phylogenetically related, by having a Parascon buccopharyngeal apparatus and Ramajendas claws. In contrast to general eutardigrade evolution, which is primarily determined by claw morphology, itaquasconid evolution is more related to buccopharyngeal apparatus morphology, which shows homoplastic evolution at superfamily, family and subfamily levels, and also defines functional trophic groups in soil-related environments.

http://zoobank.org/urn:lsid:zoobank.org:pub:068B9D87-27E2-4B26-8920-FF03CEF9869A     

Gobius xoriguer,a new offshore Mediterranean goby (Gobiidae), and phylogenetic relationships within the genus Gobius

Ichthyological Research - Gobius xoriguer sp. nov., a new ofshore species of goby (Teleostei: Gobiidae: Gobiinae) is described based on three specimens collected in 2010, 2012 and 2018 in the...     

PCR derived molecular markers and phylogenetic relationships in theSecale genus

DNA from 22 different species, accessions, cultivars and lines included in theSecale genus were analyzed by the polymerase chain reaction (PCR), using as primers five pairs of oligonucleotides derived from specific sequences. A total of 42 amplified bands were considered, and some of them appeared to be potentially useful as molecular markers for some of the analyzed groups. These amplified bands were used to generate molecular phenograms inside theSecale genus.