Response of the bioluminescent bioreporter<Emphasis Type="Italic">Pseudomonas fluorescens</Emphasis> HK44 to analogs of naphthalene and salicylic acid

Pseudomonasfluorescens HK44 is a lux-based bioluminescent bioreporter capable of selective luminescence in the presence of naphthalene and/or salicylic acid intermediate of its metabolism. We attempted to induce bioluminescence (BL) in this strain with 72 compounds, viz. substituted naphthalenes, naphthalene-like compounds (e.g., quinoline), substituted salicylic acids, salicylic acid-like compounds (e.g., 2-anthranilic acid), oligocyclic aromates, and intermediates of naphthalene metabolism to better discriminate response specificity. From them, 42 induced BL significantly lower as compared to naphthalene, three (viz. isoquinoline, o-cresol, and salicylamide) induced BL significantly greater than naphthalene, and 27 yielded no bioluminescent response whatsoever. Strain HK44 is therefore not prone to extensive false-positive signaling and can serve as a fairly specific indicator organism for naphthalene bioavailability. At elevated concentrations, 41 compounds inhibited BL. Thus, the inclusion of constitutive bioreporter controls as indicators of sample toxicity is vital to successful biosensing application.     

Bioluminescent most-probable-number monitoring of a genetically engineered bacterium during a long-term contained field release

Pseudomonas fluorescens HK44 is a lux-based bioluminescent bioreporter capable of emitting light upon exposure to naphthalene, salicylate, and other substituted analogs. The bacterium was inoculated into intermediate-scale field lysimeters and population dynamics were monitored with time. Two methods were used to enumerate cell numbers in soil: a standard selective plating technique with colony hybridization verification and a modified lux-based most-probable-number (lux-MPN) assay based on the detection of bioluminescence. The lux-MPN assay was developed and evaluated as a possible supplement or replacement for the labor-intensive and time-consuming selective plating assay. Comparisons between selective plate counts and lux-MPN population estimates showed similar trends over the 2-year study, except that lux-MPN estimates were consistently less than selective plate counts. Verification of P. fluorescens HK44 genotype through colony hybridization techniques revealed that selective plating was actually overestimating HK44 populations and that lux-MPN values were more closely approximating true HK44 cell densities, except within the first few weeks after inoculation, when lux-MPN estimates underrepresented population densities. Thus, utilizing bioluminescence as a population monitoring tool for lux-based microorganisms was shown to be more effective and precise than standard selective plating techniques, and provided an accurate ecological analysis of P. fluorescens HK44 population dynamics over an extended period. Received: 9 August 1999 / Received revision: 3 November 1999 / Accepted: 4 January 2000     

An Optimization of a Bioassay for Toluene Analogs using Bioluminescence Reporter Strain KG1206

A genetically engineered strain of P. putida mt-2 KG1206 used in this study contains the intact TOL plasmid and a plasmid with the P _m-lux gene, and bioluminescence was produced by direct (m-toluate and benzoate) and indirect inducers (toluene analogs). Much less bioluminescence was produced by benzoate and o-xylene among the tested inducers. This bioluminescence producing strain was used for the quantification of m-toluate in soil, and a quantification protocol for pollutant was developed for standardization. Values determined by bioluminescence were in the range of 75 (min.) ～158 (max.) % of their true concentration as determined by HPLC analysis. Statistical analysis indicates that this bioluminescence strain is useful for quantifying specific pollutant in environmental system. However, more investigation is required for mixture pollutants in the environment.     

Plant regeneration in <Emphasis Type="Italic">Arachis stenosperma</Emphasis> Krapov. and W. C. Gregory from roots and calluses derived from leaflets of <Emphasis Type="Italic">in vitro</Emphasis> plants

Seed explants of A. stenosperma were cultured on MS medium supplemented with 6-benzylaminopurine with the aim of rescuing nonviable accessions stored in seed bank conditions. The regeneration potential of leaf explants from in vitro plants derived from embryonic axes was studied by using whole leaflets and leaflet segments. Explants were cultured on Murashige and Skoog (MS) medium supplemented with different concentrations of 6-benzylaminopurine and naphthalene acetic acid. Indirect organogenesis was observed in response to 6-benzylaminopurine, either alone or in association with naphthalene acetic acid, in both explant types. Media supplemented with naphthalene acetic acid as the sole growth regulator induced rhizogenesis in whole leaflets and leaflet segments, with subsequent shoot production directly from the roots.     

On-line detection of low naphthalene concentrations with a bioluminescent sensor

On-line tests with Pseudomonas fluorescens HK44 were carried out using a biosensor system with a flow-through cell and sample injections to detect low concentrations of naphthalene. Kinetic experiments permitted a 19 min response time and definition of a 50 min induction period for bioluminescence assays. A mathematical model showed that 0.2 g/l is the best cell concentration to be used in the detection of low naphthalene concentrations, with the highest acceleration rate of bioluminescence sensitivity increase (0.46 nA l/(g min²)). Calibration curves with different concentrations of naphthalene showed a linear correlation up to 0.4 mg/l (3 μM) corresponding to 211 nA output signal. The lower limit of naphthalene detection by strain HK44 was in the region of 0.02 mg/l (0.16 μM), below the naphthalene health advisory limit for drinking water consumed over a lifetime suggested by EPA.     

Involvement of alkylhydroxybenzenes in the <Emphasis Type="Italic">Escherichia coli</Emphasis> response to the lethal effect of UV irradiation

This work is concerned with the role of alkylhydroxybenzenes (AHBs), chemical analogs of the autoregulatory microbial d ₁ factors, on the development of the stress response of bacterial cells to UV irradiation, including SOS system induction, preservation of cell viability, and S → R phase transitions of the Escherichia coli test strain with the bioluminescence genes cloned under the control of the recA gene promoter. UV irradiation, a natural stress factor, and an increase in AHB concentrations were found to elicit uniform responses in bacteria, indicating that AHBs function as alarmones, i.e., alarm signals. It was revealed that preincubating bacteria with alkylhydroxybenzenes considerably enhanced their viability upon irradiation with lethal UV doses; this was accompanied by a relative decrease in the SOS response activity and a concomitant increase in the frequency of phase transitions. The efficiency of the protective action of AHBs increased with an increase in their hydrophobicity degree. The probable mechanism of the protective effect of AHBs is discussed, based on their capacity for the interaction with biopolymers, which results in changing their structural organization and conferring resistance to a broad spectrum of stress factors. Such a “passive” protective mechanism reduces the susceptibility of DNA to UV irradiation, causing a decrease in the parameters related to the SOS system induction that is responsible for the “active” protective mechanism in bacterial cells. As a result, viability retention under the lethal influence of UV irradiation is possible at minimal values of repair activity and is accompanied by an increase in the phenotypic variability of the surviving part of a bacterial population.     

Enzymes of naphthalene metabolism by <Emphasis Type="Italic">Pseudomonas fluorescens</Emphasis> 26K Strain

The ability of Pseudomonas fluorescens 26K strain to utilize naphthalene at concentrations up to 600 mg/liter as the sole source of carbon and energy in mineral liquid media was shown. Using HPLC, TLC, and mass-spectrometry, the intermediates of naphthalene transformation by this strain were identified as naphthalene cis-1,2-dihydrodiol, salicylaldehyde, salicylate, catechol, 2-hydroxymuconic semialdehyde, and 1-naphthol. Catechol 2,3-dioxygenase (a homotetramer with native molecular mass 125 kDa) and NAD⁺-dependent homohexameric naphthalene cis-1,2-dihydrodiol dehydrogenase with native molecular mass 160 kDa were purified from crude extract of the strain and characterized. NAD⁺-dependent homodimeric salicylaldehyde dehydrogenase with molecular mass 110 kDa was purified and characterized for the first time. Based on the data, a pathway of naphthalene degradation by P. fluorescens 26K is suggested.     

Hydroxylation of naphthalene by aromatic peroxygenase from <Emphasis Type="Italic">Agrocybe aegerita</Emphasis> proceeds via oxygen transfer from H<Subscript>2</Subscript>O<Subscript>2</Subscript> and intermediary epoxidation

Agrocybe aegerita peroxidase/peroxygenase (AaP) is an extracellular fungal biocatalyst that selectively hydroxylates the aromatic ring of naphthalene. Under alkaline conditions, the reaction proceeds via the formation of an intermediary product with a molecular mass of 144 and a characteristic UV absorption spectrum (A _max 210, 267, and 303 nm). The compound was semistable at pH 9 but spontaneously hydrolyzed under acidic conditions (pH <7) into 1-naphthol as major product and traces of 2-naphthol. Based on these findings and literature data, we propose naphthalene 1,2-oxide as the primary product of AaP-catalyzed oxygenation of naphthalene. Using ¹⁸O-labeled hydrogen peroxide, the origin of the oxygen atom transferred to naphthalene was proved to be the peroxide that acts both as oxidant (primary electron acceptor) and oxygen source.     

Survival of naphthalene-degrading<Emphasis Type="Italic"> Pseudomonas putida</Emphasis> NCIB 9816-4 in naphthalene-amended soils: toxicity of naphthalene and its metabolites

Survival of naphthalene-degrading Pseudomonas putida NCIB 9816-4 was measured in nonsterile soil samples (coal tar-contaminated and pristine) with and without added crystalline naphthalene over a period of 21 days. A 2–3 log decrease in cfu occurred in the presence, but not absence, of added naphthalene. We used aqueous suspensions of crystalline naphthalene to explore potential mechanisms of its toxicity on the test bacterium under aerobic conditions. Measurements of dissolved naphthalene in medium indicated that uptake by P. putida NCIB 9816-4 maintained naphthalene at concentrations well below saturation. Accumulation of catechol was documented by high-performance liquid chromatography and gas chromatography/mass spectrometry in the presence of 0.5% (w/v) naphthalene crystals. Transient catechol accumulation was highest when cells entered stationary phase. A decrease in catechol concentration correlated with the development of brown color in the medium. Brown pigment accumulation correlated with a decrease in viable cell counts. These results suggested that catechol, related compounds, and their condensation products can accumulate to toxic levels in stationary phase P. putida NCIB 9816-4 cells. We hypothesize that the same mechanism of toxicity may occur under the nutrient-limited conditions expected in soil.     

MICROSOURCES OF BIOLUMINESCENCE IN PYROCYSTIS FUSIFORMIS (PYRROPHYTA)1

The large dinoflagellate, Pyrocystis fusiformis Murray, emits biolumtnescence on stimulation with dilute acid. The bioluminescence can be seen in the light microscope to originate in a spherical region just distal to the nucleus during the day and appears as a persistent glow which can be localized in an orange-brown sphere. At night, the bioluminescence, in response to stimulation, is a bright flash from microsources scattered throughout the cytoplasm. The orange sphere can no longer be seen nor does a bioluminescent glow originate from this central region on stimulation. This difference in the position of intracellular bioluminescence between day and night has allowed the identification in electron micrographs of structures which correspond to the source of bioluminescence during the day. Light is emitted from a spherical mass of vesicles which contain electron-dense short rods with rounded ends, sometimes crossed by electron-transparent narrow bands. At night, these vesicles can be recognized in the peripheral cytoplasm. It is proposed that these vesicles are the structural counterparts of the microsources of bioluminescence in P. fusiformis.     

THE ROLE OF CALCIUM IN FLOW‐STIMULATED BIOLUMINESCENCE OF THE RED TIDE DINOFLAGELLATE LINGULODINIUM POLYEDRUM

Many marine planktonic dinoflagellates emit flashes of light in response to either laminar or turbulent flows as well as direct mechanical stimulation. The production of a flash of light is known to be mediated by a proton‐mediated action potential across the vacuolar membrane; the mechanotransduction process initiating this action potential is unknown. Here we report on an investigation into the role of Ca⁺² in the mechanotransduction process regulating bioluminescence in the red tide dinoflagellate Lingulodinium polyedrum. Calcium ionophores and low concentrations of the membrane‐disrupting agent digitonin stimulated bioluminescence only when calcium was present in the media or added with the agent, indicating that the flash‐triggering vacuolar action potential is specifically stimulated by a calcium influx. A variety of known calcium channel blockers or antagonists inhibited mechanically stimulated bioluminescence but did not affect cellular bioluminescent capacity. In many cases the inhibitory affect occurred after only a brief exposure. In addition, gadolinium (Gd⁺³), a blocker of many stretch‐activated ion channels, caused potent inhibition of mechanically stimulated bioluminescence. The order of potency of the transition metals tested was La⁺³ > Gd⁺³ > Co⁺² > Mn⁺² > Ni⁺², similar to their potency as blockers of known calcium channels. Experiments with a quantified shear flow demonstrated that flow‐stimulated bioluminescence depended on the level of extracellular calcium. Future work will elucidate the signaling pathway involving calcium‐mediated flow‐stimulated mechanotransduction. Our goal is to use bioluminescence as a proxy for the initial cellular mechanotransduction events triggered by fluid flow.     

Second bioluminescence‐activating component in the luminous fungus Mycena chlorophos

Mycena chlorophos is an oxygen‐dependent bioluminescent fungus. The mechanisms underlying its light emission are unknown. A component that increased the bioluminescence intensity of the immature living gills of M. chlorophos was isolated from mature M. chlorophos gills and chemically characterized. The bioluminescence‐activating component was found to be trans‐3,4‐dihydroxycinnamic acid and its bioluminescence activation was highly structure‐specific. ¹³C‐ and ¹⁸O‐labelling studies using the immature living gills showed that trans‐3,4‐dihydroxycinnamic acid was synthesized from trans‐4‐hydroxycinnamic acid in the gills by hydroxylation with molecular oxygen as well as by the general metabolism, and trans‐3,4‐dihydroxycinnamic acid did not produce hispidin (detection‐limit concentration: 10 pmol/1 g wet gill). Addition of 0.01 mM hispidin to the immature living gills generated no bioluminescence activation. These results suggested that the prompt bioluminescence activation resulting from addition of trans‐3,4‐dihydroxycinnamic acid could not be attributed to the generation of hispidin. Copyright © 2016 John Wiley & Sons, Ltd.     

Salophen Copper(II) Complex‐Assisted Click Reactions for Fast Synthesis of 1,2,3‐Triazoles Based on Naphthalene‐1,4‐dione Scaffold,Antibacterial Evaluation,and Molecular Docking Studies

The salophen copper(II) complex was successfully used for the efficient synthesis of new 1,2,3‐triazoles based on the naphthalene‐1,4‐dione scaffold. The reaction of 2‐chloro‐3‐(prop‐2‐yn‐1‐yloxy)naphthalene‐1,4‐dione or 2,3‐bis(prop‐2‐yn‐1‐yloxy)naphthalene‐1,4‐dione with aromatic azides in the presence of a low copper catalyst (loading 1 mol‐%) afforded 2‐chloro‐3‐[(1‐phenyl‐1H‐1,2,3‐triazol‐4‐yl)methoxy]naphthalene‐1,4‐dione or 2,3‐bis[(1‐phenyl‐1H‐1,2,3‐triazol‐4‐yl)methoxy]naphthalene‐1,4‐dione, respectively. The advantages of these reactions are short reaction times, high‐to‐excellent reaction yields, operational simplicity, and mild experimental conditions. The new 1,2,3‐triazoles obtained were screened for their in vitro antibacterial activities and were subjected to molecular docking studies.     

Continuous water toxicity monitoring using immobilized<Emphasis Type="Italic">Photobacterium phosphoreum</Emphasis>

Water toxicity monitoring based on the continuous cultivation ofPhotobacterium phosphoreum is presented. Normally, after 10 days of operation, a dark variant, which emits no light, appears and dominates the population, resulting in a rapid decrase in bioluminescence. Therefore, to overcome this problem, a fluidized-bed reactor is used in which alginate-immobilized cells are grown and leaking cells are continuously released into the effluent. Experimental results revealed that the dominance of dark variants was suppressed inside the immobilized results revealed that the dominance of dark variants was suppressed inside the immobilized beads, thereby mitigating the rapid loss of bioluminescence. Plus, a high dilution rate (1.2 h⁻¹) prevented the occurrence of other microbial contamination in the reactor. The concentration and bioluminescence of the released cells were sufficient to measure the water toxicity for more than 4 weeks.     

EFFECTS OF METALS AND ORGANIC CONTAMINANTS ON THE RECOVERY OF BIOLUMINESCENCE IN THE MARINE DINOFLAGELLATE PYROCYSTIS LUNULA (DINOPHYCEAE)1

Pyrocystis lunula Schütt is a unicellular photoautotrophic dinoflagellate, commonly found in marine environments, displaying circadian‐controlled bioluminescence. Because of this species' characteristics, effects of pollutants on bioluminescence in P. lunula may make for an easy and simple bioassay that would be valuable for toxicity testing and the protection of coastal resources. This study therefore investigated the short‐term effects of metals and organic pollutants on the recovery of the bioluminescent potential in P. lunula. Recovery of bioluminescence was strongly inhibited in a dose‐dependent manner by all reference contaminants tested, the system being most sensitive to copper and cadmium (4‐h IC₅₀s 0.96 and 1.18 μM, respectively), followed by phenanthrene, lead, SDS, and nickel (4‐h IC₅₀s 1.64, 12.8, 15.6, and 73.1 μM, respectively), whereas relatively high concentrations of phenol were needed to elicit a response (4‐h IC₅₀ 1.64 mM). Except for exposure to lead and nickel, the inhibitory effects of cadmium, copper, and all organic pollutants were reversible, with P. lunula recovering 80%–100% of its bioluminescence potential after a period of 72 h in uncontaminated medium. Our results show that the restoration of bioluminescence in P. lunula is sensitive to the reference contaminants tested and obtains highly reproducible results.     

Diversity of genetic systems responsible for naphthalene biodegradation in <Emphasis Type="Italic">Pseudomonas fluorescens</Emphasis> strains

The genetic systems that are responsible for naphthalene catabolism were analyzed in 18 naphthalene-degrading Pseudomonas fluorescens strains isolated from oil-contaminated soils in different regions of Russia. It was found that 13 strains contain plasmids, from 20 to 120 kb in size, at least 5 of which are conjugative and bear the catabolic genes responsible for the complete utilization of naphthalene and salicylate. Five plasmids belong to the P-7 incompatibility group, and two plasmids belong to the P-9 incompatibility group. The naphthalene biodegradation genes of P. fluorescens are highly homologous to each other. The study revealed a new group of the nahAc genes and two new variants of the nahG gene. The suggestion is made that the key genes of naphthalene biodegradation, nahAc and nahG, evolve independently and occur in P. fluorescens strains in different combinations.Translated from Mikrobiologiya, Vol. 74, No. 1, 2005, pp. 70–78.Original Russian Text Copyright © 2005 by Izmalkova, Sazonova, Sokolov, Kosheleva, Boronin.     

Cinnamaldehyde and cinnamaldehyde derivatives reduce virulence in <Emphasis Type="Italic">Vibrio</Emphasis> spp. by decreasing the DNA-binding activity of the quorum sensing response regulator LuxR

Background  

To date, only few compounds targeting the AI-2 based quorum sensing (QS) system are known. In the present study, we screened cinnamaldehyde and substituted cinnamaldehydes for their ability to interfere with AI-2 based QS. The mechanism of QS inhibition was elucidated by measuring the effect on bioluminescence in several Vibrio harveyi mutants. We also studied in vitro the ability of these compounds to interfere with biofilm formation, stress response and virulence of Vibrio spp. The compounds were also evaluated in an in vivo assay measuring the reduction of Vibrio harveyi virulence towards Artemia shrimp.